abstract：:In this study, we hypothesized that sympatrically grown farmed fish, i.e. fish which experience similar environmental conditions and nutritionally similar diets, would have more convergent gut microbiota. Using a "common garden" approach, we identified the core microbiota and bacterial community structure differences ...

journal_title：Microbial ecology

authors： Nikouli E,Meziti A,Smeti E,Antonopoulou E,Mente E,Kormas KA

更新日期：2021-02-01 00:00:00

abstract：:To elucidate the individual and multiple roles of physiological bacterial groups involved in biogeochemical cycles of carbon, nitrogen, phosphorus and sulfur, the changes in the abundance of aerobic bacteria (heterotrophs, methane oxidizers, ammonia oxidizers, sulfur oxidizers, phosphate solubilizers, phosphate accumu...

journal_title：Microbial ecology

authors： Sabu EA,Gonsalves MJ,Sreepada RA,Shivaramu MS,Ramaiah N

更新日期：2021-02-01 00:00:00

abstract：:With the recent advancement of next-generation sequencing methods, there has been an increase in studies on identification of vineyard microbiota, winery-associated microbiota, and microbiota in wine fermentation. However, there have been few studies investigating the fungal microbiota of table grapes which present di...

journal_title：Microbial ecology

authors： Cureau N,Threlfall R,Savin M,Marasini D,Lavefve L,Carbonero F

更新日期：2021-01-29 00:00:00

abstract：:Understanding the dynamics of plant-associated microbial communities within agriculture is well documented. However, the ecological processes that assemble the plant microbiome are not well understood. This study elucidates the relative dominance of assembly processes across plant compartments (root, stem, and leaves)...

journal_title：Microbial ecology

authors： Moroenyane I,Mendes L,Tremblay J,Tripathi B,Yergeau É

更新日期：2021-01-18 00:00:00

abstract：:The high plasticity of root morphology, physiology, and function influences root-associated microbiomes. However, the variation in root-associated microbiome diversity and structures in response to root diameter at different root depths remains poorly understood. Here, we selected black locust (Robinia pseudoacacia L....

journal_title：Microbial ecology

authors： Zai X,Luo W,Bai W,Li Y,Xiao X,Gao X,Wang E,Wei G,Chen W

更新日期：2021-01-15 00:00:00

abstract：:The digestive tract of animals harbors microbiota important for the host's fitness and performance. The interaction between digestive tract bacteria and soil animal hosts is still poorly explored despite the importance of soil fauna for ecosystem processes. In this study, we investigated the interactions between the b...

journal_title：Microbial ecology

authors： García Hernández E,Berg MP,Van Oosten AR,Smit C,Falcão Salles J

更新日期：2021-01-09 00:00:00

abstract：:Lichens host highly diverse microbial communities, with bacteria being one of the most explored groups in terms of their diversity and functioning. These bacteria could partly originate from symbiotic propagules developed by many lichens and, perhaps more commonly and depending on environmental conditions, from differ...

journal_title：Microbial ecology

authors： Leiva D,Fernández-Mendoza F,Acevedo J,Carú M,Grube M,Orlando J

更新日期：2021-01-06 00:00:00

abstract：:Environmental pollution by plastic debris is estimated on a scale of 100 million metric tons, a portion of which is fragmented into micro- and nanoplastics. These fragments are often colonized by bacterial species in marine environments, possibly contributing to the biodegradation of such materials. However, further i...

journal_title：Microbial ecology

authors： Oliveira MM,Proenca AM,Moreira-Silva E,de Castro AM,Dos Santos FM,Marconatto L,Medina-Silva R

更新日期：2021-01-03 00:00:00

abstract：:Aedes aegypti develop in aquatic habitats in which mosquito larvae are exposed to physicochemical elements and microorganisms that may influence their life cycle and their ability to transmit arboviruses. Little is known about the natural bacterial communities associated with A. aegypti or their relation to the biotic...

journal_title：Microbial ecology

authors： Hery L,Guidez A,Durand AA,Delannay C,Normandeau-Guimond J,Reynaud Y,Issaly J,Goindin D,Legrave G,Gustave J,Raffestin S,Breurec S,Constant P,Dusfour I,Guertin C,Vega-Rúa A

更新日期：2021-01-01 00:00:00

abstract：:The original article contained mistakes in the authors' affiliations. ...

journal_title：Microbial ecology

authors： Torralba MG,Aleti G,Li W,Moncera KJ,Lin YH,Yu Y,Masternak MM,Golusinski W,Golusinski P,Lamperska K,Edlund A,Freire M,Nelson KE

更新日期：2020-11-20 00:00:00

abstract：:Fine root endophytes (FRE) were traditionally considered a morphotype of arbuscular mycorrhizal fungi (AMF), but recent genetic studies demonstrate that FRE belong within the subphylum Mucoromycotina, rather than in the subphylum Glomeromycotina with the AMF. These findings prompt enquiry into the fundamental ecology ...

journal_title：Microbial ecology

authors： Albornoz FE,Orchard S,Standish RJ,Dickie IA,Bending GD,Hilton S,Lardner T,Foster KJ,Gleeson DB,Bougoure J,Barbetti MJ,You MP,Ryan MH

更新日期：2020-11-03 00:00:00

abstract：:Understanding the rules that govern the successions of gut microbiota is prerequisite for testing general ecological theories and sustaining a desirable microbiota. However, the ignorance of microeukaryotes raises the question of whether gut microeukaryotes are assembled according to the same rules as bacteria. We tra...

journal_title：Microbial ecology

authors： Xiong J,Li X,Yan M,Lu J,Qiu Q,Chen J

更新日期：2020-11-01 00:00:00

abstract：:Rainforest aquatic ecosystems include complex habitats with scarce information on their unicellular eukaryote diversity and community structure. We have investigated the diversity of ciliates in freshwater and brackish environments along the Brazilian Atlantic Forest, based on the hypervariable V4 region of the 18S-rD...

journal_title：Microbial ecology

authors： Fernandes NM,Campello-Nunes PH,Paiva TS,Soares CAG,Silva-Neto ID

更新日期：2020-10-06 00:00:00

abstract：:Invasive terrestrial isopods are likely to have altered leaf litter decomposition processes in North American forests, but the mechanisms underlying these alterations and the degree to which they differ among isopod species are poorly characterized. Using mixed-deciduous leaf litter microcosms, we quantified the effec...

journal_title：Microbial ecology

authors： Des Marteaux LE,Kullik SA,Habash M,Schmidt JM

更新日期：2020-10-01 00:00:00

abstract：:Rice sheath rot has been mainly associated with the bacterial pathogen Pseudomonas fuscovaginae and in some cases to the fungal pathogen Sarocladium oryzae; it is yet unclear if they are part of a complex disease. The bacterial and fungal community associated with rice sheath rot symptomatic and asymptomatic rice plan...

journal_title：Microbial ecology

authors： Musonerimana S,Bez C,Licastro D,Habarugira G,Bigirimana J,Venturi V

更新日期：2020-10-01 00:00:00

abstract：:Hydroelectric reservoirs are highly regulated ecosystems, where the understanding on bacterioplankton has been very limited so far. In view of significant changes in river hydrological conditions by dam construction, hydraulic load (i.e., the ratio of mean water depth to water retention time) was assumed to control ba...

journal_title：Microbial ecology

authors： Yang M,Shi J,Wang B,Xiao J,Li W,Liu CQ

更新日期：2020-10-01 00:00:00

abstract：:Microbial communities within oxygen minimum zones (OMZs) are crucial drivers of marine biogeochemical cycles; however, we still lack an understanding of how these communities are distributed across an OMZ. We explored vertical (from 5 to 500 m depth) and horizontal (coast to open ocean) distribution of bacterioplankto...

journal_title：Microbial ecology

authors： Pajares S,Varona-Cordero F,Hernández-Becerril DU

更新日期：2020-10-01 00:00:00

abstract：:Mediterranean forests own distinct characteristics resulting from climate, soil, and vegetation that affect soil microbial communities' assembly and their associated functions. We initiated a multi-scalar analysis of environmental drivers of soil functioning to (1) identify pertinent factorial scales and (2) determine...

journal_title：Microbial ecology

authors： Brunel C,Da Silva AF,Gros R

更新日期：2020-10-01 00:00:00

abstract：:Prochlorococcus is the most abundant photosynthetic prokaryote on our planet. The extensive ecological literature on the Prochlorococcus collective (PC) is based on the assumption that it comprises one single genus comprising the species Prochlorococcus marinus, containing itself a collective of ecotypes. Ecologists a...

journal_title：Microbial ecology

authors： Tschoeke D,Salazar VW,Vidal L,Campeão M,Swings J,Thompson F,Thompson C

更新日期：2020-10-01 00:00:00

abstract：:Wild Japanese macaques (Macaca fuscata Blyth) living in the highland and lowland areas of Yakushima are known to have different diets, with highland individuals consuming more leaves. We aim to clarify whether and how these differences in diet are also reflected by gut microbial composition and fermentation ability. T...

journal_title：Microbial ecology

authors： Hanya G,Tackmann J,Sawada A,Lee W,Pokharel SS,de Castro Maciel VG,Toge A,Kuroki K,Otsuka R,Mabuchi R,Liu J,Hatakeyama M,Yamasaki E,von Mering C,Shimizu-Inatsugi R,Hayakawa T,Shimizu KK,Ushida K

更新日期：2020-08-01 00:00:00

abstract：:The oriental fruit fly, Bactrocera dorsalis (Hendel), is an important invasive agricultural insect pest with a wide host range, and has spread around the world over the last century. This evolutionary trait may have arisen primarily from interactions between B. dorsalis and other invertebrates that share the same ecol...

journal_title：Microbial ecology

authors： Zhang W,Gu Q,Niu J,Wang JJ

更新日期：2020-08-01 00:00:00

abstract：:Since 2008, the kiwifruit industry has been devastated by a pandemic outbreak of Pseudomonas syringae pv. actinidiae (Psa), the causal agent of bacterial canker. This disease has become the most significant limiting factor in kiwifruit production. Psa colonizes different organs of the host plant, causing a specific sy...

journal_title：Microbial ecology

authors： Donati I,Cellini A,Sangiorgio D,Vanneste JL,Scortichini M,Balestra GM,Spinelli F

更新日期：2020-07-01 00:00:00

abstract：:Antimicrobial resistance (AMR) in the aquatic environment has received increasing attention in recent years, and growing eutrophication problems may contribute to AMR in aquatic ecosystems. To evaluate whether and how eutrophication affects AMR, 40 surface water samples were collected from the Minjiang River, Fujian P...

journal_title：Microbial ecology

authors： Li XD,Chen YH,Liu C,Hong J,Deng H,Yu DJ

更新日期：2020-07-01 00:00:00

abstract：:Propionate is one of the major intermediates in anaerobic digestion of organic waste to CO2 and CH4. In methanogenic environments, propionate is degraded through a mutualistic interaction between symbiotic propionate oxidizers and methanogens. Although temperature heavily influences the microbial ecology and performan...

journal_title：Microbial ecology

authors： Chen YT,Zeng Y,Wang HZ,Zheng D,Kamagata Y,Narihiro T,Nobu MK,Tang YQ

更新日期：2020-07-01 00:00:00

abstract：:Diverse microbial communities living in subsurface coal seams are responsible for important geochemical processes including the movement of carbon between the geosphere, biosphere and atmosphere. Microbial conversion of the organic matter in coal to methane involves a complex assemblage of bacteria and archaea working...

journal_title：Microbial ecology

authors： Vick SHW,Greenfield P,Willows RD,Tetu SG,Midgley DJ,Paulsen IT

更新日期：2020-07-01 00:00:00

abstract：:Genetic diversification through the emergence of variants is one of the known mechanisms enabling the adaptation of bacterial communities. We focused in this work on the adaptation of the model strain Pseudomonas putida KT2440 in association with another P. putida strain (PCL1480) recently isolated from soil to invest...

journal_title：Microbial ecology

authors： Bridier A,Piard JC,Briandet R,Bouchez T

更新日期：2020-07-01 00:00:00

abstract：:Social stress can dramatically influence the health of animals via communication between gut microbiota and the HPA system. However, this effect has been rarely investigated among different social ranked animals after chronic repeated social encounters. In this study, we evaluated changes and differences in microbiota...

journal_title：Microbial ecology

authors： Zhao J,Li G,Lu W,Huang S,Zhang Z

更新日期：2020-05-01 00:00:00

abstract：:To date, little is known about the diazotrophs in freshwater ecosystems. In this study, we examined the diversity, abundance, and distribution of the diazotrophic community in the deep oligotrophic Lake Fuxian using high-throughput sequencing and quantitative polymerase chain reaction of nifH genes. Our results showed...

journal_title：Microbial ecology

authors： Wang L,Xing P,Li H,Zhou L,Wu QL

更新日期：2020-05-01 00:00:00

abstract：:The main current methods for controlling American Foulbrood (AFB) in honeybees, caused by the bacterial pathogen Paenibacillus larvae, are enforced incineration or prophylactic antibiotic treatment, neither of which is fully satisfactory. This has led to an increased interest in the natural relationships between the p...

journal_title：Microbial ecology

authors： Lamei S,Stephan JG,Nilson B,Sieuwerts S,Riesbeck K,de Miranda JR,Forsgren E

更新日期：2020-04-01 00:00:00

abstract：:Faecal contamination poses health risks for the recreational users of urban estuaries. However, our understanding of the potential pathogenicity of faecal microbes in these environments is limited. To this end, a study was conducted to understand the spatial and seasonal distribution of Salmonella in water and sedimen...

journal_title：Microbial ecology

authors： Siddiqee MH,Henry R,Deletic A,Bulach DM,Coleman RA,McCarthy DT

更新日期：2020-02-01 00:00:00

abstract：:Many sponges host abundant and active microbial communities that may play a role in the uptake of dissolved organic matter (DOM) by the sponge holobiont, although the mechanism of DOM uptake and metabolism is uncertain. Bulk and compound-specific isotopic analysis of whole sponge, isolated sponge cells, and isolated s...

journal_title：Microbial ecology

authors： Shih JL,Selph KE,Wall CB,Wallsgrove NJ,Lesser MP,Popp BN

更新日期：2020-02-01 00:00:00

abstract：:Rice root-associated microbial community play an important role in plant nutrient acquisition, biomass production, and stress tolerance. Herein, root-associated community assembly was investigated under different phosphate input levels in phosphorus (P)-deficient paddy soil. Rice was grown in a long-term P-depleted pa...

journal_title：Microbial ecology

authors： Long XE,Yao H

更新日期：2020-02-01 00:00:00

abstract：:Microorganisms play a crucial role in lignocellulosic degradation. Many enriched microbial communities have demonstrated to reach functional and structural stability with effective degrading capacities of industrial interest. These microbial communities are typically composed by only few dominant species and a high nu...

journal_title：Microbial ecology

authors： Puentes-Téllez PE,Salles JF

更新日期：2020-02-01 00:00:00

abstract：:Fungi play an important role in cycling organic matter and nutrients in marine ecosystems. However, the distribution of fungal communities in the ocean, especially the vertical distribution along depth in the water column, remained poorly understood. Here, we assess the depth-related distribution pattern of fungal com...

journal_title：Microbial ecology

authors： Li W,Wang M,Burgaud G,Yu H,Cai L

更新日期：2019-11-01 00:00:00

abstract：:In dryland regions, biological soil crusts (BSCs) have numerous important ecosystem functions. Crust species and functions are, however, highly spatially heterogeneous and remain poorly understood at a range of scales. In this study, chlorophyll fluorescence imaging was used to quantify millimeter-scale patterns in th...

journal_title：Microbial ecology

authors： Lan S,Thomas AD,Tooth S,Wu L,Hu C

更新日期：2019-11-01 00:00:00

abstract：:Network analysis was used to show changes in network attributes by analyzing the relations among the main soil microbial groups in a potted tomato soil inoculated with arbuscular mycorrhizal fungus, treated with low doses of Mentha spicata essential oil, or both, and then exposed to tenfold higher oil addition (stress...

journal_title：Microbial ecology

authors： Stamou GP,Monokrousos N,Gwynn-Jones D,Whitworth DE,Papatheodorou EM

更新日期：2019-11-01 00:00:00

abstract：:Selective inhibition (SI) has been routinely used to differentiate the contributions of bacteria and fungi to soil ecological processes. SI experiments typically measured rapid responses within hours since the addition of inhibitor, but the long-term effects of selective biocides on microbial community composition and...

journal_title：Microbial ecology

authors： Pan Y,Wu Y,Li X,Zeng J,Lin X

更新日期：2019-11-01 00:00:00

abstract：:Arsenic (As) and antimony (Sb) are both toxic metalloids that are of primary concern for human health. Mining activity has introduced elevated levels of arsenic and antimony into the rivers and has increased the risks of drinking water contamination in China. Due to their mobility, the majority of the metalloids origi...

journal_title：Microbial ecology

authors： Sun X,Li B,Han F,Xiao E,Xiao T,Sun W

更新日期：2019-10-01 00:00:00

abstract：:Huanglongbing (HLB), caused by Candidatus Liberibacter asiaticus (CLas), an uncultured α-proteobacterium, is the most destructive disease of citrus trees worldwide. In previous studies, trunk injections of penicillin reduced CLas titers and HLB symptoms in citrus. However, antibiotic effects on the whole plant microbi...

journal_title：Microbial ecology

authors： Ascunce MS,Shin K,Huguet-Tapia JC,Poudel R,Garrett KA,van Bruggen AHC,Goss EM

更新日期：2019-08-01 00:00:00

abstract：:Staphylococcus aureus, an opportunistic pathogen member of the nasal and skin microbiota, can also be found in human oral samples and has been linked to infectious diseases of the oral cavity. As the nasal and oral cavities are anatomically connected, it is currently unclear whether S. aureus can colonize the oral cav...

journal_title：Microbial ecology

authors： Lima BP,Hu LI,Vreeman GW,Weibel DB,Lux R

更新日期：2019-08-01 00:00:00