Abstract:
:Lichens host highly diverse microbial communities, with bacteria being one of the most explored groups in terms of their diversity and functioning. These bacteria could partly originate from symbiotic propagules developed by many lichens and, perhaps more commonly and depending on environmental conditions, from different sources of the surroundings. Using the narrowly distributed species Peltigera frigida as an object of study, we propose that bacterial communities in these lichens are different from those in their subjacent substrates, even if some taxa might be shared. Ten terricolous P. frigida lichens and their substrates were sampled from forested sites in the Coyhaique National Reserve, located in an understudied region in Chile. The mycobiont identity was confirmed using partial 28S and ITS sequences. Besides, 16S fragments revealed that mycobionts were associated with the same cyanobacterial haplotype. From both lichens and substrates, Illumina 16S amplicon sequencing was performed using primers that exclude cyanobacteria. In lichens, Proteobacteria was the most abundant phylum (37%), whereas soil substrates were dominated by Acidobacteriota (39%). At lower taxonomic levels, several bacterial groups differed in relative abundance among P. frigida lichens and their substrates, some of them being highly abundant in lichens but almost absent in substrates, like Sphingomonas (8% vs 0.2%), and others enriched in lichens, as an unassigned genus of Chitinophagaceae (10% vs 2%). These results reinforce the idea that lichens would carry some components of their microbiome when propagating, but they also could acquire part of their bacterial community from the substrates.
journal_name
Microb Ecoljournal_title
Microbial ecologyauthors
Leiva D,Fernández-Mendoza F,Acevedo J,Carú M,Grube M,Orlando Jdoi
10.1007/s00248-020-01662-ysubject
Has Abstractpub_date
2021-01-06 00:00:00eissn
0095-3628issn
1432-184Xpii
10.1007/s00248-020-01662-ypub_type
杂志文章abstract::We examined the abundance of viruses on microorganisms in activated sludge and the dynamics of their community structure. Direct counting with epifluorescence microscopy and pulsed-field gel electrophoresis (PFGE) were applied to 20 samples from 14 full-scale wastewater treatment plants (wwtps) treating municipal, ind...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-006-9150-9
更新日期:2007-01-01 00:00:00
abstract::Extreme environments such as the Antarctic can lead to the discovery of new microbial taxa, as well as to new microbial-derived natural products. Considering that little is known yet about the diversity and the genetic resources present in these habitats, the main objective of this study was to evaluate the fungal com...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-018-1217-x
更新日期:2019-01-01 00:00:00
abstract::Non-trophic interactions are increasingly recognised as a key parameter of predator-prey interactions. In soil, predation by bacterivorous nematodes is a major selective pressure shaping soil bacterial communities, and many bacteria have evolved defence mechanisms such as toxicity. In this study, we show that extracel...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-011-9821-z
更新日期:2011-05-01 00:00:00
abstract::The potential role of host plant species in the selection of symbiotic, nitrogen-fixing Frankia strains belonging to the Elaeagnus host infection group was assessed in bioassays with two Morella, three Elaeagnus, and one Shepherdia species as capture plants, inoculated with soil slurries made with soil collected from ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-009-9513-0
更新日期:2009-08-01 00:00:00
abstract::In many vertebrates, social interactions and nutrition can affect the colonization of gut symbionts across generations. In the highly social honey bee, it is unknown to what extent the hive environment and older worker individuals contribute to the generational transmission of core gut bacteria. We used high-throughpu...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0716-2
更新日期:2016-05-01 00:00:00
abstract::Primary succession is a fundamental process in macroecosystems; however, if and how soil development influences microbial community structure is poorly understood. Thus, we investigated changes in the bacterial community along a chronosequence of three unvegetated, early successional soils ( approximately 20-year age ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-006-9144-7
更新日期:2007-01-01 00:00:00
abstract::Stimulation of plant productivity caused by Agaricus fairy rings has been reported, but little is known about the effects of these fungi on soil aggregation and the microbial community structure, particularly the communities that can bind soil particles. We studied three concentric zones of Agaricus lilaceps fairy rin...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-013-0194-3
更新日期:2013-07-01 00:00:00
abstract::Members of the ant tribe Camponotini have coevolved with Blochmannia, an obligate intracellular bacterial mutualist. This endosymbiont lives within host bacteriocyte cells that line the ant midgut, undergoes maternal transmission from host queens to offspring, and contributes to host nutrition via nitrogen recycling a...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-013-0264-6
更新日期:2013-10-01 00:00:00
abstract::Methanotrophic bacteria are able to use methane (CH4) as a sole carbon and energy source. Photochemical oxidation of methane takes place in the stratosphere, whereas in the troposphere, this process is carried out by methanotrophic bacteria. On the one hand, it is known that the efficiency of biological CH4 oxidation ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-018-1248-3
更新日期:2019-04-01 00:00:00
abstract::Freshwater aquifers in granitic rocks are widespread microbial habitats in the terrestrial subsurface. Microbial populations in deep granitic groundwater from two recently drilled (1 and 2 years) and two old boreholes (14 and 25 years) were compared. The 16S rRNA gene sequences related to "Candidatus Magnetobacterium ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-013-0184-5
更新日期:2013-04-01 00:00:00
abstract::An enrichment culture method is described for quantifying the activity of hydrocarbon oxidizing bacteria in water and sediments. Application of the procedure indicated that the hydrocarbon oxidizing potential of environmental samples reflects the hydrocarbon burden of the area, the ability of the microflora to utilize...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02010379
更新日期:1975-03-01 00:00:00
abstract::Recent and substantial yield losses of Styrian oil pumpkin (Cucurbita pepo L. subsp. pepo var. styriaca Greb.) are primarily caused by the ascomycetous fungus Didymella bryoniae but bacterial pathogens are frequently involved as well. The diversity of endophytic microbial communities from seeds (spermosphere), roots (...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-011-9942-4
更新日期:2012-02-01 00:00:00
abstract::Bluegill (Lepomis macrochirus) in Lake Biwa, Japan, feed on benthic invertebrates (benthivorous type), aquatic plants (herbivorous type), and zooplankton (planktivorous type). To evaluate the effect of food on intestinal bacterial microbiota, we characterized and compared the intestinal microbiota of these three types...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-006-9018-z
更新日期:2006-04-01 00:00:00
abstract::Microbial diversity was evaluated in an anoxic zone of Tucuruí Hydroelectric Power Station reservoir in Brazilian Amazonia using a culture-independent approach by amplifying and sequencing fragments of the 16S rRNA gene using metagenomic DNA as a template. Samples obtained from the photic, aphotic (40 m) and sediment ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-011-9906-8
更新日期:2011-11-01 00:00:00
abstract::Bacterial degradation is an ecosystem service that offers a promising method for the remediation of contaminated soils. To assess the dynamics and efficiency of bacterial degradation, reliable microbial simulation models, along with the relevant processes, are required. We present an approach aimed at improving reliab...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-011-9927-3
更新日期:2012-02-01 00:00:00
abstract::Soil contamination with heavy metals is a widespread problem, especially prominent on grounds lying in the vicinity of mines, smelters, and other industrial facilities. Many such areas are located in Southern Poland; they are polluted mainly with Pb, Zn, Cd, or Cu, and locally also with Cr. As for now, little is known...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-013-0344-7
更新日期:2014-04-01 00:00:00
abstract::XTT (3'-[1-[(phenylamino)-carbonyl]-3,4-tetrazolium]-bis(4-methoxy-6-nitro)benzenesulfonic acid hydrate), MTS (3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium, inner salt), and WST-1 (4-(3-4-iodophenyl)-2-(4-nitrophenyl)-2H-5-tetrazolio)-1,3-benzenedisulfonate) are tetrazolium ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-004-0012-z
更新日期:2005-04-01 00:00:00
abstract::Geosmithia spp. (Ascomycota: Hypocreales) are little-studied, dry-spored fungi that occur in galleries built by many phloeophagous bark beetles. This study mapped the distribution and environmental preferences of Geosmithia species occurring in galleries of temperate European bark beetles. One hundred seven host tree ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-007-9251-0
更新日期:2008-01-01 00:00:00
abstract::Interactions between bacteria and protozoa in soil were studied over 2-week periods in the field and in a pot experiment. Under natural conditions the total biological activity was temporarily synchronized by a large rainfall, and in the laboratory by the addition of water to dried-out soil, with or without plants. In...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02341429
更新日期:1981-12-01 00:00:00
abstract::Bacterial symbionts on frog skin can reduce the growth of the chytrid fungus Batrachochytrium dendrobatidis (Bd) through production of inhibitory metabolites. Bacteria can be effective at increasing the resistance of amphibians to chytridiomycosis when added to amphibian skin, and isolates can be screened for producti...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0701-9
更新日期:2016-01-01 00:00:00
abstract::Many sponges host abundant and active microbial communities that may play a role in the uptake of dissolved organic matter (DOM) by the sponge holobiont, although the mechanism of DOM uptake and metabolism is uncertain. Bulk and compound-specific isotopic analysis of whole sponge, isolated sponge cells, and isolated s...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-019-01410-x
更新日期:2020-02-01 00:00:00
abstract::The present study aimed to experimentally quantify the influence of a reduction of surface sediment permeability on microbial characteristics and ecological processes (respiration and leaf litter decomposition) occurring in the hyporheic zone (i.e. the sedimentary interface between surface water and groundwater). The ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-010-9774-7
更新日期:2011-05-01 00:00:00
abstract::The occurrence and distribution of Azorhizobium and Rhizobium strains that induce stem nodulation of Sesbania rostrata were determined in four vegetation zones in Senegal. Based on tests with 16 Rhizobium and 10 Azorhizobium strains nodulating S. rostrata, a method was devised to distinguish among the strains. In all ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF00217424
更新日期:1995-01-01 00:00:00
abstract::Rhizospheric soil samples were taken from Puna native grasses along an altitudinal gradient. Biodiversity of arbuscular mycorrhizal fungi (AMF) and associated bacteria was analyzed considering altitude and grasses photosynthetic pathways (metabolic type C3, C4). Cultivation-dependent approaches were applied to obtain ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-007-9313-3
更新日期:2008-05-01 00:00:00
abstract::Cultivation and molecular-based approaches were used to study microbial diversity in two Chilean marine sediments contaminated with high (835 ppm) and very high concentrations of copper (1,533 ppm). The diversity of cultivable bacteria resistant to copper was studied at oxic and anoxic conditions, focusing on sulfate-...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-012-0120-0
更新日期:2013-02-01 00:00:00
abstract::Different nominal molecular weight (nMW) fractions of DOC from a southeastern blackwater river were concentrated by ultrafiltration and added to sieved river water to assess each fraction's ability to stimulate bacterial growth. Bacterial growth was measured using change in bacterial biomass from direct counts and usi...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02014960
更新日期:1987-01-01 00:00:00
abstract::Interactions between mushrooms, yeasts, and parasitic fungi are probably common in nature, but are rarely described. Bolete fruiting bodies are associated with a broad spectrum of microorganisms including yeasts, and they are commonly infected with filamentous mycoparasites of the genus Sepedonium (teleomorph Hypomyce...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-011-9923-7
更新日期:2012-02-01 00:00:00
abstract::Antimicrobial resistance (AMR) in the aquatic environment has received increasing attention in recent years, and growing eutrophication problems may contribute to AMR in aquatic ecosystems. To evaluate whether and how eutrophication affects AMR, 40 surface water samples were collected from the Minjiang River, Fujian P...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-019-01464-x
更新日期:2020-07-01 00:00:00
abstract::The relative amounts of hyphal inoculum in forest soils may determine the capacity for fungi to compete with and replace early colonizers of wood in ground contact. Our aim in this study was to test the flexibility of priority effects (colonization timing) by varying the timing of inoculum introduction (i.e., precolon...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0588-5
更新日期:2015-05-01 00:00:00
abstract::Facultative methylotrophic bacteria of the genus Methylobacterium are consistently found in association with plants, particularly in the phyllosphere. To gain a better understanding of the mechanisms underlying the dispersal and occurrence of Methylobacterium on plants, diverse strains were isolated, identified, and s...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-010-9725-3
更新日期:2010-08-01 00:00:00