Spatial Distribution Patterns of Bacterioplankton in the Oxygen Minimum Zone of the Tropical Mexican Pacific.

Abstract:

:Microbial communities within oxygen minimum zones (OMZs) are crucial drivers of marine biogeochemical cycles; however, we still lack an understanding of how these communities are distributed across an OMZ. We explored vertical (from 5 to 500 m depth) and horizontal (coast to open ocean) distribution of bacterioplankton and its relationships with the main oceanographic conditions in three transects of the tropical Mexican Pacific OMZ. The distribution of the microbial diversity and the main clades changed along the transition from oxygen-rich surface water to the OMZ core, demonstrating the sensitivity of key bacterial groups to deoxygenation. The euphotic zone was dominated by Synechococcales, followed by Flavobacteriales, Verrucomicrobiales, Rhodobacterales, SAR86, and Cellvibrionales, whereas the OMZ core was dominated by SAR11, followed by SAR406, SAR324, SAR202, UBA10353 marine group, Thiomicrospirales and Nitrospinales. The marked environmental gradients along the water column also supported a high potential for niche partitioning among OMZ microorganisms. Additionally, in the OMZ core, bacterial assemblages from the same water mass were more similar to each other than those from another water mass. There were also important differences between coastal and open-ocean communities: Flavobacteriales, Verrucomicrobiales, Rhodobacterales, SAR86, and Cellvibrionales were more abundant in coastal areas, while Synechococcales, SAR406, SAR324, SAR202, UBA10353 marine group, and Thiomicrospirales were more abundant in the open ocean. Our results suggest a biogeographic structure of the bacterioplankton in this OMZ region, with limited community mixing across water masses, except in upwelling events, and little dispersion of the community by currents in the euphotic zone.

journal_name

Microb Ecol

journal_title

Microbial ecology

authors

Pajares S,Varona-Cordero F,Hernández-Becerril DU

doi

10.1007/s00248-020-01508-7

subject

Has Abstract

pub_date

2020-10-01 00:00:00

pages

519-536

issue

3

eissn

0095-3628

issn

1432-184X

pii

10.1007/s00248-020-01508-7

journal_volume

80

pub_type

杂志文章
  • Influence of Wastewater Discharge on the Metabolic Potential of the Microbial Community in River Sediments.

    abstract::To reveal the variation of microbial community functions during water filtration process in river sediments, which has been utilized widely in natural water treatment systems, this study investigates the influence of municipal wastewater discharge to streams on the phylotype and metabolic potential of the microbiome i...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-015-0680-x

    authors: Li D,Sharp JO,Drewes JE

    更新日期:2016-01-01 00:00:00

  • Chlorobenzoate-degrading bacteria in similar pristine soils exhibit different community structures and population dynamics in response to anthropogenic 2-, 3-, and 4-chlorobenzoate levels.

    abstract::A study was conducted to determine the diversity of 2-, 3-, and 4-chlorobenzoate (CB) degraders in two pristine soils with similar physical and chemical characteristics. Surface soils were collected from forested sites and amended with 500 microg of 2-, 3-, or 4-CB g(-1) soil. The CB levels and degrader numbers were m...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-003-1048-1

    authors: Gentry TJ,Wang G,Rensing C,Pepper IL

    更新日期:2004-07-01 00:00:00

  • Biotic disturbance, recolonization, and early succession of bacterial assemblages in intertidal sediments.

    abstract::The role of disturbance in structuring natural microbial communities has been largely unexplored. Disturbance associated with invertebrate ingestion can reduce bacterial biomass and alter metabolic activities and compositions of bacterial assemblages in marine sediments. The primary objectives of the research presente...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-003-1031-x

    authors: Plante CJ,Wilde SB

    更新日期:2004-08-01 00:00:00

  • Variability in Bradyrhizobium japonicum and B. elkanii seven years after introduction of both the exotic microsymbiont and the soybean host in a cerrados soil.

    abstract::The plasticity of rhizobial genomes is far greater than previously thought, with complex genomic recombination events that may be accelerated by the often stressful environmental conditions of the tropics. This study aimed at evaluating changes in soybean rhizobia due to adaptation to inhospitable environmental condit...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-006-9149-2

    authors: Batista JS,Hungria M,Barcellos FG,Ferreira MC,Mendes IC

    更新日期:2007-02-01 00:00:00

  • Detection of Spiroplasma and Wolbachia in the bacterial gonad community of Chorthippus parallelus.

    abstract::We have recently detected the endosymbiont Wolbachia in multiple individuals and populations of the grasshopper Chorthippus parallelus (Orthoptera: acrididae). This bacterium induces reproductive anomalies, including cytoplasmic incompatibility. Such incompatibilities may help explain the maintenance of two distinct s...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-013-0226-z

    authors: Martínez-Rodríguez P,Hernández-Pérez M,Bella JL

    更新日期:2013-07-01 00:00:00

  • Structural and functional responses of a sewage microbial community to dilution-induced reductions in diversity.

    abstract::The relationship between functional redundancy and microbial community structure-diversity was examined using laboratory incubations to ensure constant environmental conditions. Serial dilutions of a sewage microbial community were prepared, used to inoculate sterile sewage, and maintained in batch culture. Probabilit...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-006-9033-0

    authors: Franklin RB,Mills AL

    更新日期:2006-08-01 00:00:00

  • Geosmithia fungi are highly diverse and consistent bark beetle associates: evidence from their community structure in temperate Europe.

    abstract::Geosmithia spp. (Ascomycota: Hypocreales) are little-studied, dry-spored fungi that occur in galleries built by many phloeophagous bark beetles. This study mapped the distribution and environmental preferences of Geosmithia species occurring in galleries of temperate European bark beetles. One hundred seven host tree ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-007-9251-0

    authors: Kolarík M,Kubátová A,Hulcr J,Pazoutová S

    更新日期:2008-01-01 00:00:00

  • Soil Inoculation with Bacillus spp. Modifies Root Endophytic Bacterial Diversity, Evenness, and Community Composition in a Context-Specific Manner.

    abstract::The use of microbial inoculants containing plant growth-promoting rhizobacteria as a promoter of plant fitness and health is becoming increasingly popular in agriculture. However, whether and how these bacteria affect indigenous bacterial communities in field conditions is sparsely explored. We studied the effects of ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-018-1160-x

    authors: Gadhave KR,Devlin PF,Ebertz A,Ross A,Gange AC

    更新日期:2018-10-01 00:00:00

  • Francisella novicida forms in vitro biofilms mediated by an orphan response regulator.

    abstract::Francisella tularensis is associated with water and waterways and infects many species of animals, insects, and protists. The mechanism Francisella utilizes to persist in the environment and in tick vectors is currently unknown. We have demonstrated for the first time that Francisella novicida, a model organism of F. ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9586-9

    authors: Durham-Colleran MW,Verhoeven AB,van Hoek ML

    更新日期:2010-04-01 00:00:00

  • Micrococcus luteus -- survival in amber.

    abstract::A growing body of evidence now supports the isolation of microorganisms from ancient materials. However, questions about the stringency of extraction methods and the genetic relatedness of isolated organisms to their closest living relatives continue to challenge the authenticity of these ancient life forms. Previous ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-003-2016-5

    authors: Greenblatt CL,Baum J,Klein BY,Nachshon S,Koltunov V,Cano RJ

    更新日期:2004-07-01 00:00:00

  • Penicillin Trunk Injection Affects Bacterial Community Structure in Citrus Trees.

    abstract::Huanglongbing (HLB), caused by Candidatus Liberibacter asiaticus (CLas), an uncultured α-proteobacterium, is the most destructive disease of citrus trees worldwide. In previous studies, trunk injections of penicillin reduced CLas titers and HLB symptoms in citrus. However, antibiotic effects on the whole plant microbi...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-018-1302-1

    authors: Ascunce MS,Shin K,Huguet-Tapia JC,Poudel R,Garrett KA,van Bruggen AHC,Goss EM

    更新日期:2019-08-01 00:00:00

  • PAH degradation capacity of soil microbial communities--does it depend on PAH exposure?

    abstract::Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous pollutants of the environment. But is their microbial degradation equally wide in distribution? We estimated the PAH degradation capacity of 13 soils ranging from pristine locations (total PAHs approximately 0.1 mg kg(-1)) to heavily polluted industrial sites (tot...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-005-0022-5

    authors: Johnsen AR,Karlson U

    更新日期:2005-11-01 00:00:00

  • Low temperature reveals genetic variability against male-killing Spiroplasma in Drosophila melanogaster natural populations.

    abstract::Spiroplasma endosymbionts are maternally inherited microorganisms which infect many arthropod species. In some Drosophila species, it acts as a reproductive manipulator, spreading in populations by killing the sons of infected mothers. Distinct Drosophila melanogaster populations from Brazil exhibit variable male-kill...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-013-0295-z

    authors: Ventura IM,Costa T,Klaczko LB

    更新日期:2014-01-01 00:00:00

  • Allelopathic effects of toxic haptophyte Prymnesium parvum lead to release of dissolved organic carbon and increase in bacterial biomass.

    abstract::The haptophyte Prymnesium parvum has lytic properties, and it affects coexisting phytoplankton species through allelopathy. We studied the effect of P. parvum allelochemicals on the lysis of the nontoxic and nonaxenic cryptomonad Rhodomonas salina and the consequent release of dissolved organic carbon (DOC). Changes i...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-006-9188-8

    authors: Uronen P,Kuuppo P,Legrand C,Tamminen T

    更新日期:2007-07-01 00:00:00

  • The Influence of Time and Plant Species on the Composition of the Decomposing Bacterial Community in a Stream Ecosystem.

    abstract::Foliar chemistry influences leaf decomposition, but little is known about how litter chemistry affects the assemblage of bacterial communities during decomposition. Here we examined relationships between initial litter chemistry and the composition of the bacterial community in a stream ecosystem. We incubated replica...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-016-0735-7

    authors: Wymore AS,Liu CM,Hungate BA,Schwartz E,Price LB,Whitham TG,Marks JC

    更新日期:2016-05-01 00:00:00

  • Impacts of Arsenic and Antimony Co-Contamination on Sedimentary Microbial Communities in Rivers with Different Pollution Gradients.

    abstract::Arsenic (As) and antimony (Sb) are both toxic metalloids that are of primary concern for human health. Mining activity has introduced elevated levels of arsenic and antimony into the rivers and has increased the risks of drinking water contamination in China. Due to their mobility, the majority of the metalloids origi...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-019-01327-5

    authors: Sun X,Li B,Han F,Xiao E,Xiao T,Sun W

    更新日期:2019-10-01 00:00:00

  • A bacterium belonging to the Rickettsiaceae family inhabits the cytoplasm of the marine ciliate Diophrys appendiculata (Ciliophora, Hypotrichia).

    abstract::Bacteria of the family Rickettsiaceae (order Rickettsiales, alpha-Proteobacteria) are mainly known to be endosymbionts of arthropods with the capability to infect also vertebrate cells. Recently, they have also been found as leech endocytobionts. In the present paper, we report the first finding of a bacterium belongi...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-004-0055-1

    authors: Vannini C,Petroni G,Verni F,Rosati G

    更新日期:2005-04-01 00:00:00

  • Different Interspecies Electron Transfer Patterns during Mesophilic and Thermophilic Syntrophic Propionate Degradation in Chemostats.

    abstract::Propionate is one of the major intermediates in anaerobic digestion of organic waste to CO2 and CH4. In methanogenic environments, propionate is degraded through a mutualistic interaction between symbiotic propionate oxidizers and methanogens. Although temperature heavily influences the microbial ecology and performan...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-020-01485-x

    authors: Chen YT,Zeng Y,Wang HZ,Zheng D,Kamagata Y,Narihiro T,Nobu MK,Tang YQ

    更新日期:2020-07-01 00:00:00

  • Phylogenetic diversity of numerically important Arctic sea-ice bacteria cultured at subzero temperature.

    abstract::Heterotrophic bacteria in sea ice play a key role in carbon cycling, but little is known about the predominant players at the phylogenetic level. In a study of both algal bands and clear ice habitats within summertime Arctic pack ice from the Chukchi Sea, we determined the abundance of total bacteria and actively resp...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-001-1026-4

    authors: Junge K,Imhoff F,Staley T,Deming JW

    更新日期:2002-04-01 00:00:00

  • Diversity and activity of PAH-degrading bacteria in the phyllosphere of ornamental plants.

    abstract::Phyllosphere bacteria on ornamental plants were characterized based on their diversity and activity towards the removal of polycyclic aromatic hydrocarbons (PAHs), the major air pollutants in urban area. The amounts of PAH-degrading bacteria were about 1-10% of the total heterotrophic phyllosphere populations and cons...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-009-9631-8

    authors: Yutthammo C,Thongthammachat N,Pinphanichakarn P,Luepromchai E

    更新日期:2010-02-01 00:00:00

  • Bacterial growth on dissolved organic carbon from a blackwater river.

    abstract::Different nominal molecular weight (nMW) fractions of DOC from a southeastern blackwater river were concentrated by ultrafiltration and added to sieved river water to assess each fraction's ability to stimulate bacterial growth. Bacterial growth was measured using change in bacterial biomass from direct counts and usi...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02014960

    authors: Meyer JL,Edwards RT,Risley R

    更新日期:1987-01-01 00:00:00

  • Comparisons of the fungal and protistan communities among different marine sponge holobionts by pyrosequencing.

    abstract::To date, the knowledge of eukaryotic communities associated with sponges remains limited compared with prokaryotic communities. In a manner similar to prokaryotes, it could be hypothesized that sponge holobionts have phylogenetically diverse eukaryotic symbionts, and the eukaryotic community structures in different sp...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-014-0393-6

    authors: He L,Liu F,Karuppiah V,Ren Y,Li Z

    更新日期:2014-05-01 00:00:00

  • Measurement of Electron Transport System (ETS) activity in soil.

    abstract::Electron transport system (ETS) activity was measured in amended and nonamended soil by measuring the reduction of 2-(p-iodophenyl)-3-(p-nitrophenyl)-5-phenyl tetrazolium chloride (INT) to iodonitrotetrazolium formazan (INT-formazan), which can be easily extracted with methanol without interference from other compound...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02010449

    authors: Trevors JT,Mayfield CI,Inniss WE

    更新日期:1982-10-01 00:00:00

  • Asymmetric response of carbon metabolism at high and low salt stress in Vibrio sp. DSM14379.

    abstract::Energy redistribution between growth and maintenance in salt-stressed cells is especially important for bacteria living in estuarine environments. In this study, Gram-negative bacterium Vibrio sp. DSM14379, isolated from the estuarine waters of the northern Adriatic Sea, was grown aerobically in a peptone-yeast extrac...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-011-9870-3

    authors: Danevčič T,Stopar D

    更新日期:2011-07-01 00:00:00

  • Analysis of the community structure of yeasts associated with the decaying stems of cactus. I.Stenocereus gummosus.

    abstract::Yeast communities of decayingStenocereus gummosus were analyzed for spatial, temporal, and physiological characteristics. Analysis of random samples within plants, between plants, and between localities shows that the species proportions of the yeast community are relatively constant within plants and between localiti...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02011463

    authors: Starmer WT

    更新日期:1982-06-01 00:00:00

  • Characterization of bacterial communities associated with organic aggregates in a large, shallow, eutrophic freshwater lake (Lake Taihu, China).

    abstract::Although organic-aggregate-associated bacteria play a pivotal role in microbial food webs and in the cycling of major elements, their community composition and diversity have not been extensively studied, especially in shallow freshwater systems. This study is among the first to explore intra-lake horizontal heterogen...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-008-9482-8

    authors: Tang X,Gao G,Qin B,Zhu L,Chao J,Wang J,Yang G

    更新日期:2009-08-01 00:00:00

  • Subsurface Stappia: Success Through Defence, Specialisation and Putative Pressure-Dependent Carbon Fixation.

    abstract::Diverse microbial communities living in subsurface coal seams are responsible for important geochemical processes including the movement of carbon between the geosphere, biosphere and atmosphere. Microbial conversion of the organic matter in coal to methane involves a complex assemblage of bacteria and archaea working...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-019-01471-y

    authors: Vick SHW,Greenfield P,Willows RD,Tetu SG,Midgley DJ,Paulsen IT

    更新日期:2020-07-01 00:00:00

  • Secondary metabolites of Pseudomonas fluorescens CHA0 drive complex non-trophic interactions with bacterivorous nematodes.

    abstract::Non-trophic interactions are increasingly recognised as a key parameter of predator-prey interactions. In soil, predation by bacterivorous nematodes is a major selective pressure shaping soil bacterial communities, and many bacteria have evolved defence mechanisms such as toxicity. In this study, we show that extracel...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-011-9821-z

    authors: Neidig N,Paul RJ,Scheu S,Jousset A

    更新日期:2011-05-01 00:00:00

  • Resilience of aggregated microbial communities subjected to drought--small-scale studies.

    abstract::The response of microbial communities to disturbance is a major concern for microbial ecologists since potential modifications in their composition and functioning may affect ecosystems to a larger extent. Microbial ecosystems may be resistant (not affected) or may present engineering (return to initial state) or ecol...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-014-0532-0

    authors: Barthès A,Ten-Hage L,Lamy A,Rols JL,Leflaive J

    更新日期:2015-07-01 00:00:00

  • Archaeal community structure and pathway of methane formation on rice roots.

    abstract::The community structure of methanogenic Archaea on anoxically incubated rice roots was investigated by amplification, sequencing, and phylogenetic analysis of 16S rRNA and methyl-coenzyme M reductase (mcrA) genes. Both genes demonstrated the presence of Methanomicrobiaceae, Methanobacteriaceae, Methanosarcinaceae, Met...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-003-2014-7

    authors: Chin KJ,Lueders T,Friedrich MW,Klose M,Conrad R

    更新日期:2004-01-01 00:00:00