Soil Inoculation with Bacillus spp. Modifies Root Endophytic Bacterial Diversity, Evenness, and Community Composition in a Context-Specific Manner.

abstract：:The diversity and composition of soil bacterial communities in three topographic sites (summit, foot slope, and lakeshore) from subtropical montane forest ecosystem in Taiwan were examined by using 16S rRNA gene clone library analysis. This locality is temperate, perhumid, and has low soil acidity (pH < 4), which is a...

journal_title：Microbial ecology

authors： Lin YT,Huang YJ,Tang SL,Whitman WB,Coleman DC,Chiu CY

更新日期：2010-02-01 00:00:00

abstract：:The genus Prochlorococcus is globally abundant and dominates the total phytoplankton biomass and production in the oligotrophic ocean. The single species, Prochlorococcus marinus, comprises six named ecotypes. Our aim was to analyze the taxonomic structure of the genus Prochlorococcus. We analyzed the complete genomes...

journal_title：Microbial ecology

authors： Thompson CC,Silva GG,Vieira NM,Edwards R,Vicente AC,Thompson FL

更新日期：2013-11-01 00:00:00

abstract：:Ongoing climate change is expected to affect the diversity and activity of aquatic microbes, which play a key role in plant litter decomposition in forest streams. We used a before-after control-impact (BACI) design to study the effects of warming on a forest stream reach. The stream reach was divided by a longitudina...

journal_title：Microbial ecology

authors： Duarte S,Cássio F,Ferreira V,Canhoto C,Pascoal C

更新日期：2016-08-01 00:00:00

abstract：:A previously unknown association between a luminous bacterium, Vibrio harveyi, and a benthic hydrozoan, Aglaophenia octodonta, is described. Aglaophenia hydrocladia showed a clear fluorescence in the folds along the hydrocaulus and at the base of the hydrotheca, suggesting the presence of luminous bacteria. This hypot...

journal_title：Microbial ecology

authors： Stabili L,Gravili C,Piraino S,Boero F,Alifano P

更新日期：2006-11-01 00:00:00

abstract：:The marine chrysophyteMonochrysis lutheri was grown in phosphorus-limited continuous cultures at temperatures of 15°, 18.8° and 23°C. The effect of temperature on the maximum growth rate was well-defined by the Arrhenius equation, but the Q10 for this alga (1.7) was somewhat lower than has been determined previously f...

journal_title：Microbial ecology

authors： Goldman JC

更新日期：1979-09-01 00:00:00

abstract：:Extreme environments such as the Antarctic can lead to the discovery of new microbial taxa, as well as to new microbial-derived natural products. Considering that little is known yet about the diversity and the genetic resources present in these habitats, the main objective of this study was to evaluate the fungal com...

journal_title：Microbial ecology

authors： Wentzel LCP,Inforsato FJ,Montoya QV,Rossin BG,Nascimento NR,Rodrigues A,Sette LD

更新日期：2019-01-01 00:00:00

abstract：:Alterations in microbial community composition, biomass, and function in the Florida Everglades impacted by cultural eutrophication reflect a new physicochemical environment associated with monotypic stands of Typha domingensis. Phospholipid fatty acid (PLFA) biomarkers were used to quantify microbial responses in det...

journal_title：Microbial ecology

authors： Bellinger BJ,Hagerthey SE,Newman S,Cook MI

更新日期：2012-11-01 00:00:00

abstract：:Interactions between mushrooms, yeasts, and parasitic fungi are probably common in nature, but are rarely described. Bolete fruiting bodies are associated with a broad spectrum of microorganisms including yeasts, and they are commonly infected with filamentous mycoparasites of the genus Sepedonium (teleomorph Hypomyce...

journal_title：Microbial ecology

authors： Yurkov A,Krüger D,Begerow D,Arnold N,Tarkka MT

更新日期：2012-02-01 00:00:00

abstract：:Deep sequencing of prokaryotic 16S rDNA regularly reveals thousands of microbial species thriving in many common habitats. It is still unknown how this huge microbial diversity, including many potentially competing organisms, may persist at a single site. One of plausible hypotheses is that a large number of spatially...

journal_title：Microbial ecology

authors： Falteisek L,Duchoslav V,Čepička I

更新日期：2016-07-01 00:00:00

abstract：:Lichens host highly diverse microbial communities, with bacteria being one of the most explored groups in terms of their diversity and functioning. These bacteria could partly originate from symbiotic propagules developed by many lichens and, perhaps more commonly and depending on environmental conditions, from differ...

journal_title：Microbial ecology

authors： Leiva D,Fernández-Mendoza F,Acevedo J,Carú M,Grube M,Orlando J

更新日期：2021-01-06 00:00:00

abstract：:Eucalyptus plantations offer a cost-effective and renewable source of raw material. There is substantial interest in improving forestry production, especially through sustainable strategies such as the use of plant growth-promoting bacteria. However, little is known about Eucalyptus microbiology. In this study, the en...

journal_title：Microbial ecology

authors： Fonseca EDS,Peixoto RS,Rosado AS,Balieiro FC,Tiedje JM,Rachid CTCDC

更新日期：2018-01-01 00:00:00

abstract：:A strain-specific immunofluorescence assay for enumeration of a marine denitrifying bacterium was developed and applied in the marine environment. The polyclonal antiserum for Pseudomonas stutzeri (ATCC 14405) did not react with other pseudomonads, other heterotrophs, or autotrophic nitrifying strains. The abundance o...

journal_title：Microbial ecology

authors： Ward BB,Cockcroft AR

更新日期：1993-05-01 00:00:00

abstract：:Mesophilic heterotrophic, aerobic or facultatively anaerobic bacteria that grow on yeast tryptone glucose extract agar were isolated from the surface of olive leaves of 3 or 4 different ages in January, April, July, and October from 1984 to 1989. Unweighted average linkage cluster analysis on either the Jaccard coeffi...

journal_title：Microbial ecology

authors： Ercolani GL

更新日期：1991-12-01 00:00:00

abstract：:Electron transport system (ETS) activity was measured in amended and nonamended soil by measuring the reduction of 2-(p-iodophenyl)-3-(p-nitrophenyl)-5-phenyl tetrazolium chloride (INT) to iodonitrotetrazolium formazan (INT-formazan), which can be easily extracted with methanol without interference from other compound...

journal_title：Microbial ecology

authors： Trevors JT,Mayfield CI,Inniss WE

更新日期：1982-10-01 00:00:00

abstract：:Streptomycetes are important members of soil microbial communities and are particularly active in the degradation of recalcitrant macromolecules and have been implicated in biological control of plant disease. Using a streptomycetes-specific polymerase chain reaction (PCR)-denaturing gradient gel electrophoresis (PCR-...

journal_title：Microbial ecology

authors： Inbar E,Green SJ,Hadar Y,Minz D

更新日期：2005-07-01 00:00:00

abstract：:Symbioses between prokaryotes and microbial eukaryotes, particularly ciliated protists, have been studied for a long time. Nevertheless, researchers have focused only on a few host genera and species, mainly due to difficulties in cultivating the hosts, and usually have considered a single symbiont at a time. Here, we...

journal_title：Microbial ecology

authors： Rossi A,Bellone A,Fokin SI,Boscaro V,Vannini C

更新日期：2019-07-01 00:00:00

abstract：:Didymosphenia geminata (Lyngbye) M. Schmidt is a stalked freshwater diatom that is expanding its range globally. In some rivers, D. geminata forms thick and expansive polysaccharide-dominated mats. Like other stalked diatoms, D. geminata cells attach to the substratum with a pad of adhesive extracellular polymeric sub...

journal_title：Microbial ecology

authors： Brandes J,Kuhajek JM,Goodwin E,Wood SA

更新日期：2016-10-01 00:00:00

abstract：:Many sponges host abundant and active microbial communities that may play a role in the uptake of dissolved organic matter (DOM) by the sponge holobiont, although the mechanism of DOM uptake and metabolism is uncertain. Bulk and compound-specific isotopic analysis of whole sponge, isolated sponge cells, and isolated s...

journal_title：Microbial ecology

authors： Shih JL,Selph KE,Wall CB,Wallsgrove NJ,Lesser MP,Popp BN

更新日期：2020-02-01 00:00:00

abstract：:Bats are important zoonotic reservoirs for many pathogens worldwide. Although their highly specialized ectoparasites, bat flies (Diptera: Hippoboscoidea), can transmit Bartonella bacteria including human pathogens, their eco-epidemiology is unexplored. Here, we analyzed the prevalence and diversity of Bartonella strai...

journal_title：Microbial ecology

authors： Sándor AD,Földvári M,Krawczyk AI,Sprong H,Corduneanu A,Barti L,Görföl T,Estók P,Kováts D,Szekeres S,László Z,Hornok S,Földvári G

更新日期：2018-11-01 00:00:00

abstract：:Bacteria and algae release exopolymeric substances (EPS) that perform a wide range of important functions in aquatic and terrestrial systems. In this study we measured EPS in sediments at nine littoral sites around a shallow oligotrophic basin, and tested whether the concentration and composition of EPS was related to...

journal_title：Microbial ecology

authors： Hirst CN,Cyr H,Jordan IA

更新日期：2003-07-01 00:00:00

abstract：:Network analysis was used to show changes in network attributes by analyzing the relations among the main soil microbial groups in a potted tomato soil inoculated with arbuscular mycorrhizal fungus, treated with low doses of Mentha spicata essential oil, or both, and then exposed to tenfold higher oil addition (stress...

journal_title：Microbial ecology

authors： Stamou GP,Monokrousos N,Gwynn-Jones D,Whitworth DE,Papatheodorou EM

更新日期：2019-11-01 00:00:00

abstract：:Propionate is one of the major intermediates in anaerobic digestion of organic waste to CO2 and CH4. In methanogenic environments, propionate is degraded through a mutualistic interaction between symbiotic propionate oxidizers and methanogens. Although temperature heavily influences the microbial ecology and performan...

journal_title：Microbial ecology

authors： Chen YT,Zeng Y,Wang HZ,Zheng D,Kamagata Y,Narihiro T,Nobu MK,Tang YQ

更新日期：2020-07-01 00:00:00

abstract：:Denitrifying bacteria is a driver of nitrogen removal process in wastewater treatment ecosystem. However, the geographical characteristics of denitrifying bacterial communities associated with activated sludge from diverse wastewater treatment plants (WWTPs) are still unclear. Here, quantitative PCR and next-generatio...

journal_title：Microbial ecology

authors： Zhang H,Feng J,Chen S,Zhao Z,Li B,Wang Y,Jia J,Li S,Wang Y,Yan M,Lu K,Hao H

更新日期：2019-02-01 00:00:00

abstract：:> Abstract Claims that organisms can be cultured from amber, if substantiated, would be significant contributions to our understanding of the evolution, tenacity, and potential spread of life. Three reports on the isolation of organisms from amber have been published. Cano and Borucki recently reported the isolation o...

journal_title：Microbial ecology

authors： Greenblatt CL,Davis A,Clement BG,Kitts CL,Cox T,Cano RJ

更新日期：1999-07-01 00:00:00

abstract：:Aquatic ecosystems worldwide have been substantially altered by human activities, which often induce changes in multiple factors that can interact to produce complex effects. Here, we evaluated the combined effects of dissolved nutrients (nitrogen [N] and phosphorus [P]; three levels: concentration found in oligotroph...

journal_title：Microbial ecology

authors： Gomes PP,Ferreira V,Tonin AM,Medeiros AO,Júnior JFG

更新日期：2018-05-01 00:00:00

abstract：:Simulation modeling has been an integral, albeit ad hoc, component of the field of aquatic microbial ecology for the past two decades. One of the most critical steps in simulation modeling is the initial formulation of a clear set of questions and goals. It is doubtful that a single generic model could be constructed ...

journal_title：Microbial ecology

authors： Hopkinson CS Jr,Vallino JJ

更新日期：1994-09-01 00:00:00

abstract：:Facultative methylotrophic bacteria of the genus Methylobacterium are consistently found in association with plants, particularly in the phyllosphere. To gain a better understanding of the mechanisms underlying the dispersal and occurrence of Methylobacterium on plants, diverse strains were isolated, identified, and s...

journal_title：Microbial ecology

authors： Knief C,Frances L,Vorholt JA

更新日期：2010-08-01 00:00:00

abstract：:The potential role of host plant species in the selection of symbiotic, nitrogen-fixing Frankia strains belonging to the Elaeagnus host infection group was assessed in bioassays with two Morella, three Elaeagnus, and one Shepherdia species as capture plants, inoculated with soil slurries made with soil collected from ...

journal_title：Microbial ecology

authors： Mirza BS,Welsh A,Rasul G,Rieder JP,Paschke MW,Hahn D

更新日期：2009-08-01 00:00:00

abstract：:A culture-independent molecular phylogenetic approach was used to study prokaryotic diversity in an anoxic activated sludge from a municipal wastewater treatment plant. Two 16S rRNA gene libraries were constructed using total genomic DNA and amplified by polymerase chain reaction using primers specific for archaeal or...

journal_title：Microbial ecology

authors： Chouari R,Le Paslier D,Daegelen P,Dauga C,Weissenbach J,Sghir A

更新日期：2010-08-01 00:00:00

abstract：:Next-generation sequencing has increased the coverage of microbial diversity surveys by orders of magnitude, but differentiating artifacts from rare environmental sequences remains a challenge. Clustering 16S rRNA sequences into operational taxonomic units (OTUs) organizes sequence data into groups of 97 % identity, h...

journal_title：Microbial ecology

authors： Patin NV,Kunin V,Lidström U,Ashby MN

更新日期：2013-04-01 00:00:00