Variation in Frankia populations of the Elaeagnus host infection group in nodules of six host plant species after inoculation with soil.

Abstract:

:The potential role of host plant species in the selection of symbiotic, nitrogen-fixing Frankia strains belonging to the Elaeagnus host infection group was assessed in bioassays with two Morella, three Elaeagnus, and one Shepherdia species as capture plants, inoculated with soil slurries made with soil collected from a mixed pine/grassland area in central Wisconsin, USA. Comparative sequence analysis of nifH gene fragments amplified from homogenates of at least 20 individual lobes of root nodules harvested from capture plants of each species confirmed the more promiscuous character of Morella cerifera and Morella pensylvanica that formed nodules with frankiae of the Alnus and the Elaeagnus host infection groups, while frankiae in nodules formed on Elaeagnus umbellata, Elaeagnus angustifolia, Elaeagnus commutata, and Shepherdia argentea generally belonged to the Elaeagnus host infection group. Diversity of frankiae of the Elaeagnus host infection groups was larger in nodules on both Morella species than in nodules formed on the other plant species. None of the plants, however, captured the entire diversity of nodule-forming frankiae. The distribution of clusters of Frankia populations and their abundance in nodules was unique for each of the plant species, with only one cluster being ubiquitous and most abundant while the remaining clusters were only present in nodules of one (six clusters) or two (two clusters) host plant species. These results demonstrate large effects of the host plant species in the selection of Frankia strains from soil for potential nodule formation and thus the significant effect of the choice of capture plant species in bioassays on diversity estimates in soil.

journal_name

Microb Ecol

journal_title

Microbial ecology

authors

Mirza BS,Welsh A,Rasul G,Rieder JP,Paschke MW,Hahn D

doi

10.1007/s00248-009-9513-0

subject

Has Abstract

pub_date

2009-08-01 00:00:00

pages

384-93

issue

2

eissn

0095-3628

issn

1432-184X

journal_volume

58

pub_type

杂志文章
  • Transformation of chlorinated phenolic compounds in the genusRhodococcus.

    abstract::The ability of strains of the genusRhodococcus to transform chlorinated phenolic compounds was studied. Noninduced cells of several strains ofRhodococcus, covering at least eight species, were found to attack mono-, di-, and trichlorophenols by hydroxylation at theortho position to chlorocatechols. 3-chlorophenol and ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02030123

    authors: Häggblom MM,Janke D,Salkinoja-Salonen MS

    更新日期:1989-09-01 00:00:00

  • Microbial production, enzyme activity, and carbon turnover in surface sediments of the Hudson River estuary.

    abstract::The detrital food web is a major nexus of energy flow in nearly all aquatic ecosystems. Energy enters this nexus by microbial assimilation of detrital carbon. To link microbiological variables with ecosystem process, it is necessary to understand the regulatory hierarchy that controls the distribution of microbial bio...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF00172569

    authors: Sinsabaugh RL,Findlay S

    更新日期:1995-09-01 00:00:00

  • Diversity of assimilatory nitrate reductase genes from plankton and epiphytes associated with a seagrass bed.

    abstract::Assimilatory nitrate reductase gene fragments were isolated from epiphytes and plankton associated with seagrass blades collected from Tampa Bay, Florida, USA. Nitrate reductase genes from diatoms (NR) and heterotrophic bacteria (nasA) were amplified by polymerase chain reaction (PCR) using two sets of degenerate prim...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-006-9175-0

    authors: Adhitya A,Thomas FI,Ward BB

    更新日期:2007-11-01 00:00:00

  • Effects of Carbon Source, Carbon Concentration, and Chlorination on Growth Related Parameters of Heterotrophic Biofilm Bacteria.

    abstract::To investigate growth of heterotrophic biofilm bacteria, a model biofilm reactor was developed to simulate a drinking water distribution system. Controlled addition of three different carbon sources (amino acids, carbohydrates, and humics) at three different concentrations (500, 1,000, and 2,000 ppb carbon) in the pre...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s002489901003

    authors: Ellis BD,Butterfield P,Jones WL,McFeters GA,Camper AK

    更新日期:1999-11-01 00:00:00

  • Comparative study of the growth of two strains ofNitrobacter in batch and continuous culture.

    abstract::Growth kinetics of 2Nitrobacter strains (N.w. and L) coexisting in the same soil are studied in batch and continuous culture. Monod's parameters are estimated numerically from experimental data in the case of the batch experiment, and from steady-state equations in the case of the chemostat. In both cases, the 2 strai...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02011417

    authors: Gay G,Corman A

    更新日期:1984-06-01 00:00:00

  • A Polyphasic Approach for Assessing Eco-System Connectivity Demonstrates that Perturbation Remodels Network Architecture in Soil Microcosms.

    abstract::Network analysis was used to show changes in network attributes by analyzing the relations among the main soil microbial groups in a potted tomato soil inoculated with arbuscular mycorrhizal fungus, treated with low doses of Mentha spicata essential oil, or both, and then exposed to tenfold higher oil addition (stress...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-019-01367-x

    authors: Stamou GP,Monokrousos N,Gwynn-Jones D,Whitworth DE,Papatheodorou EM

    更新日期:2019-11-01 00:00:00

  • Characterization of the microbiology within a 21 m(3)section of rock from the deep subsurface.

    abstract::The distribution of aerobic chemoheterotrophic microorganisms within a 21 m3 section of deep subsurface rock was determined. Nineteen samples for microbiological analysis were aseptically taken by hand from the walls of a 400 m deep subsurface tunnel after an alpine miner created fresh rock faces 0.76, 1.52, 2.28, and...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF00177049

    authors: Haldeman DL,Amy PS,Ringelberg D,White DC

    更新日期:1993-09-01 00:00:00

  • Low temperature reveals genetic variability against male-killing Spiroplasma in Drosophila melanogaster natural populations.

    abstract::Spiroplasma endosymbionts are maternally inherited microorganisms which infect many arthropod species. In some Drosophila species, it acts as a reproductive manipulator, spreading in populations by killing the sons of infected mothers. Distinct Drosophila melanogaster populations from Brazil exhibit variable male-kill...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-013-0295-z

    authors: Ventura IM,Costa T,Klaczko LB

    更新日期:2014-01-01 00:00:00

  • Competing factors of compost concentration and proximity to root affect the distribution of streptomycetes.

    abstract::Streptomycetes are important members of soil microbial communities and are particularly active in the degradation of recalcitrant macromolecules and have been implicated in biological control of plant disease. Using a streptomycetes-specific polymerase chain reaction (PCR)-denaturing gradient gel electrophoresis (PCR-...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-004-0111-x

    authors: Inbar E,Green SJ,Hadar Y,Minz D

    更新日期:2005-07-01 00:00:00

  • Moonmilk deposits originate from specific bacterial communities in Altamira Cave (Spain).

    abstract::The influence of bacterial communities on the formation of carbonate deposits such as moonmilk was investigated in Altamira Cave (Spain). The study focuses on the relationship between the bacterial communities at moonmilk deposits and those forming white colonizations, which develop sporadically throughout the cave. U...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-010-9731-5

    authors: Portillo MC,Gonzalez JM

    更新日期:2011-01-01 00:00:00

  • Resilience of Fungal Communities to Elevated CO2.

    abstract::Soil filamentous fungi play a prominent role in regulating ecosystem functioning in terrestrial ecosystems. This necessitates understanding their responses to climate change drivers in order to predict how nutrient cycling and ecosystem services will be influenced in the future. Here, we provide a quantitative synthes...

    journal_title:Microbial ecology

    pub_type: 杂志文章,meta分析

    doi:10.1007/s00248-016-0795-8

    authors: Veresoglou SD,Anderson IC,de Sousa NM,Hempel S,Rillig MC

    更新日期:2016-08-01 00:00:00

  • Molecular Ecology of nifH Genes and Transcripts Along a Chronosequence in Revegetated Areas of the Tengger Desert.

    abstract::The colonization and succession of diazotrophs are essential for the development of organic soil layers in desert. We examined the succession of diazotrophs in the well-established revegetated areas representing a chronosequence of 0 year (control), 22 years (restored artificially since 1981), 57 years (restored artif...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-015-0657-9

    authors: Wang J,Bao JT,Li XR,Liu YB

    更新日期:2016-01-01 00:00:00

  • Activity and Identification of Methanotrophic Bacteria in Arable and No-Tillage Soils from Lublin Region (Poland).

    abstract::Methanotrophic bacteria are able to use methane (CH4) as a sole carbon and energy source. Photochemical oxidation of methane takes place in the stratosphere, whereas in the troposphere, this process is carried out by methanotrophic bacteria. On the one hand, it is known that the efficiency of biological CH4 oxidation ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-018-1248-3

    authors: Szafranek-Nakonieczna A,Wolińska A,Zielenkiewicz U,Kowalczyk A,Stępniewska Z,Błaszczyk M

    更新日期:2019-04-01 00:00:00

  • Bacterial Signatures of "Red-Operculum" Disease in the Gut of Crucian Carp (Carassius auratus).

    abstract::Fish gut microbiota play important roles in fish immunity, nutrition, and the adaptation to environmental changes. To date, few studies have focused on the interactions among environmental factors, fish diseases, and gut microbiota compositions. We compared the gut bacterial communities of healthy crucian carps (Caras...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-017-0967-1

    authors: Li T,Li H,Gatesoupe FJ,She R,Lin Q,Yan X,Li J,Li X

    更新日期:2017-10-01 00:00:00

  • Labile and recalcitrant organic matter utilization by river biofilm under increasing water temperature.

    abstract::Microbial biofilms in rivers contribute to the decomposition of the available organic matter which typically shows changes in composition and bioavailability due to their origin, seasonality, and watershed characteristics. In the context of global warming, enhanced biofilm organic matter decomposition would be expecte...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-012-0062-6

    authors: Ylla I,Romaní AM,Sabater S

    更新日期:2012-10-01 00:00:00

  • The Combined Effect of Temperature and Host Clonal Line on the Microbiota of a Planktonic Crustacean.

    abstract::Host-associated microbiota vary across host individuals and environmental conditions, but the relative importance of their genetic background versus their environment is difficult to disentangle. We sought to experimentally determine the factors shaping the microbiota of the planktonic Crustacean, Daphnia magna. We us...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-017-1126-4

    authors: Sullam KE,Pichon S,Schaer TMM,Ebert D

    更新日期:2018-08-01 00:00:00

  • Biofilms of Pseudomonas and Lysinibacillus Marine Strains on High-Density Polyethylene.

    abstract::Environmental pollution by plastic debris is estimated on a scale of 100 million metric tons, a portion of which is fragmented into micro- and nanoplastics. These fragments are often colonized by bacterial species in marine environments, possibly contributing to the biodegradation of such materials. However, further i...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-020-01666-8

    authors: Oliveira MM,Proenca AM,Moreira-Silva E,de Castro AM,Dos Santos FM,Marconatto L,Medina-Silva R

    更新日期:2021-01-03 00:00:00

  • Novel microbial populations in deep granitic groundwater from Grimsel Test Site, Switzerland.

    abstract::Freshwater aquifers in granitic rocks are widespread microbial habitats in the terrestrial subsurface. Microbial populations in deep granitic groundwater from two recently drilled (1 and 2 years) and two old boreholes (14 and 25 years) were compared. The 16S rRNA gene sequences related to "Candidatus Magnetobacterium ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-013-0184-5

    authors: Konno U,Kouduka M,Komatsu DD,Ishii K,Fukuda A,Tsunogai U,Ito K,Suzuki Y

    更新日期:2013-04-01 00:00:00

  • Effect of Root Diameter on the Selection and Network Interactions of Root-Associated Bacterial Microbiomes in Robinia pseudoacacia L.

    abstract::The high plasticity of root morphology, physiology, and function influences root-associated microbiomes. However, the variation in root-associated microbiome diversity and structures in response to root diameter at different root depths remains poorly understood. Here, we selected black locust (Robinia pseudoacacia L....

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-020-01678-4

    authors: Zai X,Luo W,Bai W,Li Y,Xiao X,Gao X,Wang E,Wei G,Chen W

    更新日期:2021-01-15 00:00:00

  • Genetic and physiological characterization of the intestinal bacterial microbiota of Bluegill (Lepomis macrochirus) with three different feeding habits.

    abstract::Bluegill (Lepomis macrochirus) in Lake Biwa, Japan, feed on benthic invertebrates (benthivorous type), aquatic plants (herbivorous type), and zooplankton (planktivorous type). To evaluate the effect of food on intestinal bacterial microbiota, we characterized and compared the intestinal microbiota of these three types...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-006-9018-z

    authors: Uchii K,Matsui K,Yonekura R,Tani K,Kenzaka T,Nasu M,Kawabata Z

    更新日期:2006-04-01 00:00:00

  • Dominant and Subordinate Relationship Formed by Repeated Social Encounters Alters Gut Microbiota in Greater Long-Tailed Hamsters.

    abstract::Social stress can dramatically influence the health of animals via communication between gut microbiota and the HPA system. However, this effect has been rarely investigated among different social ranked animals after chronic repeated social encounters. In this study, we evaluated changes and differences in microbiota...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-019-01462-z

    authors: Zhao J,Li G,Lu W,Huang S,Zhang Z

    更新日期:2020-05-01 00:00:00

  • Soil bacterial diversity responses to root colonization by an ectomycorrhizal fungus are not root-growth-dependent.

    abstract::The hypothesis tested in this present study was that the ectomycorrhizosphere effect on the bacterial community was not root-growth-dependent. The impacts of ectomycorrhizal infection (Pisolithus albus COI007) and a chemical fertilization to reproduce the fungal effect on root growth were examined on (1) the structure...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-004-0229-x

    authors: Assigbetse K,Gueye M,Thioulouse J,Duponnois R

    更新日期:2005-10-01 00:00:00

  • Lacustrine Arcellinina (Testate Amoebae) as Bioindicators of Arsenic Contamination.

    abstract::Arcellininids (testate amoebae) were examined from 61 surface sediment samples collected from 59 lakes in the vicinity of former gold mines, notably Giant Mine, near Yellowknife, Northwest Territories, Canada to determine their utility as bioindicators of arsenic (As), which occurs both as a byproduct of gold extracti...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-016-0752-6

    authors: Nasser NA,Patterson RT,Roe HM,Galloway JM,Falck H,Palmer MJ,Spence C,Sanei H,Macumber AL,Neville LA

    更新日期:2016-07-01 00:00:00

  • Response of sphagnum peatland testate amoebae to a 1-year transplantation experiment along an artificial hydrological gradient.

    abstract::Peatland testate amoebae (TA) are well-established bioindicators for depth to water table (DWT), but effects of hydrological changes on TA communities have never been tested experimentally. We tested this in a field experiment by placing Sphagnum carpets (15 cm diameter) collected in hummock, lawn and pool microsites ...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-014-0367-8

    authors: Marcisz K,Fournier B,Gilbert D,Lamentowicz M,Mitchell EA

    更新日期:2014-05-01 00:00:00

  • Microbial community structure and dynamics in the largest natural French lake (Lake Bourget).

    abstract::We investigated the dynamics and diversity of heterotrophic bacteria, autotrophic and heterotrophic flagellates, and ciliates from March to July 2002 in the surface waters (0-50 m) of Lake Bourget. The heterotrophic bacteria consisted mainly of "small" cocci, but filaments (>2 microm), commonly considered to be grazin...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-004-0230-4

    authors: Comte J,Jacquet S,Viboud S,Fontvieille D,Millery A,Paolini G,Domaizon I

    更新日期:2006-07-01 00:00:00

  • Continuing Impacts of Selective Inhibition on Bacterial and Fungal Communities in an Agricultural Soil.

    abstract::Selective inhibition (SI) has been routinely used to differentiate the contributions of bacteria and fungi to soil ecological processes. SI experiments typically measured rapid responses within hours since the addition of inhibitor, but the long-term effects of selective biocides on microbial community composition and...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-019-01364-0

    authors: Pan Y,Wu Y,Li X,Zeng J,Lin X

    更新日期:2019-11-01 00:00:00

  • Simultaneous consumption of bacteria and dissolved organic matter byTetrahymena pyriformis.

    abstract::The addition of ciliated protozoa to aquatic microcosms and bench-scale sewage treatment plants increases decomposition rates. This is surprising, inasmuch as protozoa consume bacteria, which are the primary decomposers. One possible mechanism of the increase in decomposition rate is the direct consumption of dissolve...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/BF02011712

    authors: Glaser D

    更新日期:1988-03-01 00:00:00

  • Gut-Associated Bacteria of Dendroctonus valens and their Involvement in Verbenone Production.

    abstract::Bark beetles are the most important mortality agent in coniferous forests, and pheromones play important roles in their management. Dendroctonus valens LeConte was introduced from North America to China and has killed millions of healthy pines there. Trapping with semiochemicals and pheromones was deployed in D. valen...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-015-0625-4

    authors: Xu L,Lou Q,Cheng C,Lu M,Sun J

    更新日期:2015-11-01 00:00:00

  • Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues.

    abstract::Abnormality and disease in sponges have been widely reported, yet how sponge-associated microbes respond correspondingly remains inconclusive. Here, individuals of the sponge Carteriospongia foliascens under abnormal status were collected from the Rabigh Bay along the Red Sea coast. Microbial communities in both healt...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-014-0419-0

    authors: Gao ZM,Wang Y,Lee OO,Tian RM,Wong YH,Bougouffa S,Batang Z,Al-Suwailem A,Lafi FF,Bajic VB,Qian PY

    更新日期:2014-10-01 00:00:00

  • The vertical distribution and diversity of marine bacteriophage at a station off Southern California.

    abstract::Sixty-two bacteriophages were isolated on eight indigenous bacteria from a Pacific Ocean station spanning 887-m vertical depth, on two occasions between 1999 and 2000. On the basis of 16S rRNA sequences, six hosts were tentatively identified to be in the genus Vibrio and the other two were closely related to Altermona...

    journal_title:Microbial ecology

    pub_type: 杂志文章

    doi:10.1007/s00248-002-1059-3

    authors: Jiang S,Fu W,Chu W,Fuhrman JA

    更新日期:2003-05-01 00:00:00