Abstract:
:Mediterranean forests own distinct characteristics resulting from climate, soil, and vegetation that affect soil microbial communities' assembly and their associated functions. We initiated a multi-scalar analysis of environmental drivers of soil functioning to (1) identify pertinent factorial scales and (2) determine the relative importance of soil, vegetation, and geoclimate influences in shaping soil microbial functions across the French Mediterranean forests. Soil samples (0-15 cm) were collected from 60 forest sites and soil physicochemical and microbiological properties were assessed across different factorial scales i.e., bioclimates, slope exposures, and forest stands. Patterns in microbial catabolic potential (i.e., extracellular enzymes and microbial respiration) and carbon (C) source utilization (i.e., catabolic-level physiological profiling) were partitioned between vegetation cover, soil characteristics, and geoclimate components. Our results reveal that the catabolic potential of soil microbes was strongly influenced by the forest stands and mainly relied on ammonium and nitrate contents. In contrast, variation in C source utilization was mainly explained by vegetation cover. Soil metabolic capacities of microorganisms and resulting C dynamics were largely constrained by climate parameters, which suggests potentially important consequences for soil C storage. Our study revealed diverse structuration patterns between the catabolic potential and the carbon source utilization of soil microbial communities, and gives insights into the underlying mechanisms of soil microbial functioning in Mediterranean forests.
journal_name
Microb Ecoljournal_title
Microbial ecologyauthors
Brunel C,Da Silva AF,Gros Rdoi
10.1007/s00248-020-01518-5subject
Has Abstractpub_date
2020-10-01 00:00:00pages
669-681issue
3eissn
0095-3628issn
1432-184Xpii
10.1007/s00248-020-01518-5journal_volume
80pub_type
杂志文章abstract::Bacterial respiration contributes to atmospheric carbon dioxide accumulation and development of hypoxia and is a critical, often overlooked, component of ecosystem function. This study investigates the concept that maintenance respiration is a significant proportion of bacterial respiration at natural nutrient levels ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-018-1244-7
更新日期:2019-04-01 00:00:00
abstract::Host-associated microbiota vary across host individuals and environmental conditions, but the relative importance of their genetic background versus their environment is difficult to disentangle. We sought to experimentally determine the factors shaping the microbiota of the planktonic Crustacean, Daphnia magna. We us...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-017-1126-4
更新日期:2018-08-01 00:00:00
abstract:CONCLUSION:As the interactions between marine invertebrates and their bacterial commensals and symbionts are better understood, the application of biotechnology will enhance both environmental and economic benefit. In the immediate future, marine bacteria, either selected or genetically engineered, will play a signific...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02153225
更新日期:1986-03-01 00:00:00
abstract::The digestive tract of animals harbors microbiota important for the host's fitness and performance. The interaction between digestive tract bacteria and soil animal hosts is still poorly explored despite the importance of soil fauna for ecosystem processes. In this study, we investigated the interactions between the b...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-020-01656-w
更新日期:2021-01-09 00:00:00
abstract::Invasive terrestrial isopods are likely to have altered leaf litter decomposition processes in North American forests, but the mechanisms underlying these alterations and the degree to which they differ among isopod species are poorly characterized. Using mixed-deciduous leaf litter microcosms, we quantified the effec...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-020-01527-4
更新日期:2020-10-01 00:00:00
abstract::One of the major challenges in microbial ecology for the future is to establish links between structural and functional biodiversity. This is particularly difficult when one is interested in a phylogenetically diversified function such as denitrification. The data banks are very rich in functional gene sequences (nirS...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-004-0256-7
更新日期:2005-02-01 00:00:00
abstract::Sprays of commercial preparations of the bacterium Bacillus thuringiensis subsp. israelensis are widely used for the control of mosquito larvae. Despite an abundant literature on B. thuringiensis subsp. israelensis field efficiency on mosquito control, few studies have evaluated the fate of spores in the environment a...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-013-0360-7
更新日期:2014-04-01 00:00:00
abstract::Bark beetles are the most important mortality agent in coniferous forests, and pheromones play important roles in their management. Dendroctonus valens LeConte was introduced from North America to China and has killed millions of healthy pines there. Trapping with semiochemicals and pheromones was deployed in D. valen...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0625-4
更新日期:2015-11-01 00:00:00
abstract::Growth kinetics of 2Nitrobacter strains (N.w. and L) coexisting in the same soil are studied in batch and continuous culture. Monod's parameters are estimated numerically from experimental data in the case of the batch experiment, and from steady-state equations in the case of the chemostat. In both cases, the 2 strai...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02011417
更新日期:1984-06-01 00:00:00
abstract::The distribution of aerobic chemoheterotrophic microorganisms within a 21 m3 section of deep subsurface rock was determined. Nineteen samples for microbiological analysis were aseptically taken by hand from the walls of a 400 m deep subsurface tunnel after an alpine miner created fresh rock faces 0.76, 1.52, 2.28, and...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF00177049
更新日期:1993-09-01 00:00:00
abstract::Biological soil crusts (BSCs) are communities of cryptogamic organisms, occurring in arid and semiarid regions all over the world. Based on both morphological identification and genetic analyses, we established a first cyanobacterial inventory using the biphasic approach for BSCs within two major biomes of southern Af...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-013-0301-5
更新日期:2014-02-01 00:00:00
abstract::The colonization and succession of diazotrophs are essential for the development of organic soil layers in desert. We examined the succession of diazotrophs in the well-established revegetated areas representing a chronosequence of 0 year (control), 22 years (restored artificially since 1981), 57 years (restored artif...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0657-9
更新日期:2016-01-01 00:00:00
abstract::Sulfate reduction activity (SRA) was measured via the radioactive tracer ((35)SO4 (=)) technique in sediment samples from the Canary Creek Marsh in Lewes, Delaware. Basal levels of SRA ranged from 130 to 319 nmoles of sulfate reduced/gram dry sediment/hour. With the exception of lactate and formate, all organic acids ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02016814
更新日期:1985-12-01 00:00:00
abstract::Incorporation of [(14)C]leucine into proteins of bacteria was studied in a temperate mesohumic lake. The maximum incorporation of [(14)C] leucine was reached at a concentration of 30 nM determined in dilution cultures. Growth experiments were used to estimate factors for converting leucine incorporation to bacterial c...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF00176953
更新日期:1993-11-01 00:00:00
abstract::Gut microbiota is the most complex bacterial community in the human body and its study may give important clues to the etiology of different intestinal diseases. Most studies carried out so far have used fecal samples, assuming that these samples have a similar distribution to the communities present throughout the co...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-010-9738-y
更新日期:2011-01-01 00:00:00
abstract::Proteus spp. bacteria were first described in 1885 by Gustav Hauser, who had revealed their feature of intensive swarming growth. Currently, the genus is divided into Proteus mirabilis, Proteus vulgaris, Proteus penneri, Proteus hauseri, and three unnamed genomospecies 4, 5, and 6 and consists of 80 O-antigenic serogr...
journal_title:Microbial ecology
pub_type: 杂志文章,评审
doi:10.1007/s00248-015-0720-6
更新日期:2016-11-01 00:00:00
abstract::Knowledge of the distribution of Paenibacillus larvae spores, the causative agent of American foulbrood (AFB), among individual adult honey bees is crucial for determining the appropriate number of adult bees to include in apiary composite samples when screening for diseased colonies. To study spore distribution at th...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-007-9342-y
更新日期:2008-08-01 00:00:00
abstract::A previously unknown association between a luminous bacterium, Vibrio harveyi, and a benthic hydrozoan, Aglaophenia octodonta, is described. Aglaophenia hydrocladia showed a clear fluorescence in the folds along the hydrocaulus and at the base of the hydrotheca, suggesting the presence of luminous bacteria. This hypot...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-006-9010-7
更新日期:2006-11-01 00:00:00
abstract::Different nominal molecular weight (nMW) fractions of DOC from a southeastern blackwater river were concentrated by ultrafiltration and added to sieved river water to assess each fraction's ability to stimulate bacterial growth. Bacterial growth was measured using change in bacterial biomass from direct counts and usi...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02014960
更新日期:1987-01-01 00:00:00
abstract::The plasticity of rhizobial genomes is far greater than previously thought, with complex genomic recombination events that may be accelerated by the often stressful environmental conditions of the tropics. This study aimed at evaluating changes in soybean rhizobia due to adaptation to inhospitable environmental condit...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-006-9149-2
更新日期:2007-02-01 00:00:00
abstract::In Europe as in North America, elms are devastated by Dutch elm disease (DED), caused by the alien ascomycete Ophiostoma novo-ulmi. Pathogen dispersal and transmission are ensured by local species of bark beetles, which established a novel association with the fungus. Elm bark beetles also transport the Geosmithia fun...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-017-1062-3
更新日期:2018-04-01 00:00:00
abstract::Recent and substantial yield losses of Styrian oil pumpkin (Cucurbita pepo L. subsp. pepo var. styriaca Greb.) are primarily caused by the ascomycetous fungus Didymella bryoniae but bacterial pathogens are frequently involved as well. The diversity of endophytic microbial communities from seeds (spermosphere), roots (...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-011-9942-4
更新日期:2012-02-01 00:00:00
abstract::We studied the persistence of Bacillus thuringiensis serovar israelensis (Bti) in a typical breeding site of the mosquito Ochlerotatus caspius in a particularly sensitive salt marsh ecosystem following two Bti-based larvicidal applications (Vectobac 12AS, 1.95 L/ha). The treated area was composed of four larval biotop...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-005-0247-3
更新日期:2005-11-01 00:00:00
abstract::The community structure of methanogenic Archaea on anoxically incubated rice roots was investigated by amplification, sequencing, and phylogenetic analysis of 16S rRNA and methyl-coenzyme M reductase (mcrA) genes. Both genes demonstrated the presence of Methanomicrobiaceae, Methanobacteriaceae, Methanosarcinaceae, Met...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-003-2014-7
更新日期:2004-01-01 00:00:00
abstract::Taxonomic and genetic diversities of microbial communities disturbed by chemical pollutants were lower than in undisturbed reference communities. The dominant populations within the disturbed communities had enhanced physiological tolerances and substrate utilization capabilities, indicating that generalized physiolog...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02540227
更新日期:1991-12-01 00:00:00
abstract::The role of disturbance in structuring natural microbial communities has been largely unexplored. Disturbance associated with invertebrate ingestion can reduce bacterial biomass and alter metabolic activities and compositions of bacterial assemblages in marine sediments. The primary objectives of the research presente...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-003-1031-x
更新日期:2004-08-01 00:00:00
abstract::Large areas of rainforest in Asia have been converted to plantations, with uncertain effects on soil biodiversity. Using standard metagenetic methods, we compared the soil biota of bacteria, fungi, and nematodes at three rainforest sites in Malaysia with two rubber plantation sites with similar soils and geology. We p...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-016-0790-0
更新日期:2016-08-01 00:00:00
abstract::Diverse microbial communities living in subsurface coal seams are responsible for important geochemical processes including the movement of carbon between the geosphere, biosphere and atmosphere. Microbial conversion of the organic matter in coal to methane involves a complex assemblage of bacteria and archaea working...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-019-01471-y
更新日期:2020-07-01 00:00:00
abstract::Abstract Interactions between natural bacterial assemblages and dissolved organic carbon (DOC) were investigated in two complementary batch experiments. In the first, a positive relationship was found between the proportion of electron transport system (ETS) active bacteria and the diversity of DOC in microcosms enric...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/pl00021036
更新日期:1999-10-01 00:00:00
abstract::For the soil nitrogen-fixing bacterium Azospirillum brasilense, the ability to reduce [AuCl4](-) and to form gold nanoparticles (GNPs) has been demonstrated, with the appearance of a mauve tint of the culture. To validate the shapes and chemical nature of nanoparticles, transmission electron microscopy (TEM) and X-ray...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-013-0329-6
更新日期:2014-01-01 00:00:00