当前位置： SCI文献检索 > VIRUS GENES期刊下所有文献 > Molecular analysis of the complete genomic sequences of four isolates of Gooseberry vein banding associated virus.

Molecular analysis of the complete genomic sequences of four isolates of Gooseberry vein banding associated virus.

Abstract：

:The presence of Gooseberry vein banding associated virus (GVBaV), a badnavirus in the family Caulimoviridae, is strongly correlated with gooseberry vein banding disease in Ribes spp. In this study, full-length genomic sequences of four GVBaV isolates from different hosts and geographic regions were determined to be 7649-7663 nucleotides. These isolates share identities of 96.4-97.3% for the complete genomic sequence, indicating low genetic diversity among them. The GVBaV genome contains three open reading frames (ORFs) on the plus strand that potentially encode proteins of 26, 16, and 216 kDa. The size and organization of GVBaV ORFs 1-3 are similar to those of most other badnaviruses. The putative amino acid sequence of GVBaV ORF 3 contained motifs that are conserved among badnavirus proteins including aspartic protease, reverse transcriptase, and ribonuclease H. The highly conserved putative plant tRNA(met)-binding site is also present in the 935-bp intergenic region of GVBaV. The identities of the genomic sequences of GVBaV and other badnaviruses range from 49.1% (Sugarcane bacilliform Mor virus) to 51.7% (Pelargonium vein banding virus, PVBV). Phylogenetic analysis using the amino acid sequence of the ORF 3 putative protein shows that GVBaV groups most closely to Dioscorea bacilliform virus, PVBV, and Taro bacilliform virus. These results confirm that GVBaV is a pararetrovirus of the genus Badnavirus in the family Caulimoviridae.

journal_name

Virus Genes

journal_title

Virus genes

authors

Xu D,Mock R,Kinard G,Li R

doi

10.1007/s11262-011-0614-8

subject

Has Abstract

pub_date

2011-08-01 00:00:00

pages

130-7

issue

1

eissn

0920-8569

issn

1572-994X

journal_volume

43

pub_type

杂志文章

相关文献

VIRUS GENES文献大全
  • Barriers to systemic application of virus-based vectors in gene therapy: lessons from adenovirus type 5.

    abstract：:Currently, virus-based vectors, namely derivatives of the adenovirus, are frequently used in a wide variety of ex vivo or local gene therapeutic applications. However, the efficacy of virus-based vectors in systemic applications is presently still extremely limited. Complex interactions of the various vector types wit...

    journal_title：Virus genes

    pub_type： 杂志文章,评审

    doi：10.1007/s11262-017-1498-z

    authors： Jönsson F,Kreppel F

    更新日期：2017-10-01 00:00:00

  • Molecular analysis of the hexon, penton base, and fiber-2 genes of Korean fowl adenovirus serotype 4 isolates from hydropericardium syndrome-affected chickens.

    abstract：:Fowl adenovirus serotype 4 (FAdV-4) is the causative agent of hydropericardium syndrome (HPS), a highly pathogenic disease in poultry. In the present study, hexon, penton base, and fiber-2 genes encoding major capsid proteins were analyzed in four FAdV-4 isolates from HPS-affected chickens in Korea. Nucleotide sequenc...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-016-1393-z

    authors： Park HS,Lim IS,Kim SK,Kim TK,Park CK,Yeo SG

    更新日期：2017-02-01 00:00:00

  • Hepatitis B virus subgenotype A1, occurrence of subgenotype D4, and S gene mutations among voluntary blood donors in Kenya.

    abstract：:Kenya is one of the high endemic zones for hepatitis B virus (HBV) infection. The consensuses on prevalence of the HBV genotypes and the existence of their variants have not been fully established in Kenya. Hence, there is a need to further monitor the diversity of HBV. This study aimed to extend the current molecular...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-013-0976-1

    authors： Kwange SO,Budambula NL,Kiptoo MK,Okoth F,Ochwoto M,Oduor M,Kimotho JH

    更新日期：2013-12-01 00:00:00

  • The ea22 gene of lambdoid phages: preserved prolysogenic function despite of high sequence diversity.

    abstract：:The exo-xis region of lambdoid phages contains open reading frames and genes that appear to be evolutionarily important. However, this region has received little attention up to now. In this study, we provided evidence that ea22, the largest gene of this region, favors the lysogenic pathway over the lytic pathway in c...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-020-01734-8

    authors： Dydecka A,Bloch S,Necel A,Topka G,Węgrzyn A,Tong J,Donaldson LW,Węgrzyn G,Nejman-Faleńczyk B

    更新日期：2020-04-01 00:00:00

  • Complete genome sequence of the first non-Asian isolate of Bombyx mori nucleopolyhedrovirus.

    abstract：:Brazil is one of the largest silk producers in the world. The domesticated silkworm (Bombyx mori) was formally introduced into the country in the twentieth century, and the state of Paraná is the main national producer. During larval stages, B. mori can be afflicted by many different infectious diseases, which lead to...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-014-1112-6

    authors： Ardisson-Araújo DM,Melo FL,de Souza Andrade M,Brancalhão RM,Báo SN,Ribeiro BM

    更新日期：2014-12-01 00:00:00

  • Molecular characterization of the env gene from Brazilian field isolates of Bovine leukemia virus.

    abstract：:Molecular characterization of Bovine leukemia virus (BLV) isolates from Brazil using the env gene sequences revealed a high conservation of this gene. In most cases the substitutions corresponded to silent transitions. In addition, cystein residues, potential glycosylation sites, neutralization domains and other criti...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-006-0011-x

    authors： Camargos MF,Pereda A,Stancek D,Rocha MA,dos Reis JK,Greiser-Wilke I,Leite RC

    更新日期：2007-06-01 00:00:00

  • The DI-DII linker of human parainfluenza virus type 3 fusion protein is critical for the virus.

    abstract：:Human parainfluenza virus type 3 (HPIV3) causes the majority of childhood viral pneumonia around the world. Fusing the viral and target cell membranes is crucial for its entry into target cells, and the fusion process requires the concerted actions of two viral glycoproteins: hemagglutinin-neuraminidase (HN) and fusio...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-019-01713-8

    authors： Liu Y,Chi M,Wen H,Zhao L,Song Y,Liu N,Chi L,Wang Z

    更新日期：2020-02-01 00:00:00

  • Prevalence of TT virus and GBV-C infections among patients with liver diseases and the general population in Shanghai, China.

    abstract：:To determine the prevalence of TT virus (TTV) and GB virus C/hepatitis G virus (GBV-C) infections among patients with liver disease and the general population in Shanghai, China, we studied 90 patients with liver diseases (acute hepatitis, 28; chronic hepatitis, 27; liver cirrhosis, 20; hepatocellular carcinoma, 15) a...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1023/a:1008188623062

    authors： Ding X,Mizokami M,Kang LY,Cao K,Orito E,Tanaka Y,Ueda R,Sasaki M

    更新日期：1999-01-01 00:00:00

  • Unique evolution characteristics of the envelope protein of EIAV(LN₄₀), a virulent strain of equine infectious anemia virus.

    abstract：:The Chinese equine infectious anemia virus (EIAV) virulent strain EIAV(LN40) is derived from a naturally occurring virus by continuously passing in horses for 16 generations. Its genome sequence is 23% different from that of the American strains or the Japanese strains, and the variation of envelope gp90 surface unit ...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-010-0563-7

    authors： Wang X,Wang S,Lin Y,Jiang C,Ma J,Zhao L,Lv X,Wang F,Shen R,Zhou J

    更新日期：2011-04-01 00:00:00

  • Genetic analysis of H3 subtype influenza viruses isolated from domestic ducks in northern China during 2004-2005.

    abstract：:The broad distribution and prevalence of H3 subtype influenza viruses in avian and mammalian hosts constitutes a global threat to both human and veterinary health. In this present study, six H3N8 influenza viruses isolated from domestic ducks during 2004-2005 in northern China were genetically and phylogenetically cha...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-008-0300-7

    authors： Pu J,Liu QF,Xia YJ,Fan YL,Brown EG,Tian FL,Liu JH

    更新日期：2009-02-01 00:00:00

  • Genomic analysis of a recombinant NADC30-like porcine reproductive and respiratory syndrome virus in china.

    abstract：:Recently, NADC30-like porcine reproductive and respiratory syndrome viruses (PRRSVs), which are genetically similar to the NADC30 strain isolated in the United States of America in 2008, have become prevalent in China. Here, a novel variant PRRSV strain named HNhx was successfully isolated on porcine alveolar macropha...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-017-1516-1

    authors： Wang LJ,Wan B,Guo Z,Qiao S,Li R,Xie S,Chen XX,Zhang G

    更新日期：2018-02-01 00:00:00

  • Cleavage of transcripts of foot and mouth disease virus (FMDV), Asia1 serotype, by ribozymes targeted to the VP3 and VP4 genes.

    abstract：:Two ribozyme genes were designed to cut within the VP4 and VP3 sequences of foot and mouth disease virus (FMDV) Asia1 serotype genome. The two genes were synthesized and cloned into pBluescript under the control of the T3 promoter. The ribozyme designed to cut the VP4 gene contained two catalytic sequences targeted to...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/BF01702658

    authors： Stram Y,Molad T

    更新日期：1995-01-01 00:00:00

  • Emergence of rabbit haemorrhagic disease virus 2 in the archipelago of Madeira, Portugal (2016-2017).

    abstract：:We report the detection of rabbit haemorrhagic disease virus 2 (RHDV2) in the Madeira archipelago, Portugal. Viral circulation was confirmed by RT-qPCR and vp60 sequencing. Epidemiological data revealed the outbreak initiated in October 2016 in Porto Santo affecting wild and domestic rabbits. It was then detected thre...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-017-1483-6

    authors： Carvalho CL,Silva S,Gouveia P,Costa M,Duarte EL,Henriques AM,Barros SS,Luís T,Ramos F,Fagulha T,Fevereiro M,Duarte MD

    更新日期：2017-12-01 00:00:00

  • Diversity and distribution of Maize-associated totivirus strains from Tanzania.

    abstract：:Typically associated with fungal species, members of the viral family Totiviridae have recently been shown to be associated with plants, including important crop species, such as Carica papaya (papaya) and Zea mays (maize). Maize-associated totivirus (MATV) was first described in China and more recently in Ecuador, wh...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-019-01650-6

    authors： Read DA,Featherston J,Rees DJG,Thompson GD,Roberts R,Flett BC,Mashingaidze K,Pietersen G,Kiula B,Kullaya A,Mbega ER

    更新日期：2019-06-01 00:00:00

  • Phylogenetic analysis of partial RNA-polymerase blocks II and III of Rabies virus isolated from the main rabies reservoirs in Brazil.

    abstract：:This study describes the results of the sequencing and analysis of segments of Blocks II and III of the RNA polymerase L gene of Rabies virus isolates from different reservoir species of Brazil. The phylogenetic relations of the virus were determined and a variety of species-specific nucleotides were found in the anal...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-012-0743-8

    authors： Carnieli P Jr,de Novaes Oliveira R,de Oliveira Fahl W,de Carvalho Ruthner Batista HB,Scheffer KC,Iamamoto K,Castilho JG

    更新日期：2012-08-01 00:00:00

  • Pigeon paramyxovirus type 1 variants with polybasic F protein cleavage site but strikingly different pathogenicity.

    abstract：:Newcastle disease viruses (NDV) isolated from pigeons (pigeon paramyxovirus type 1; PPMV-1) are mostly of mesogenic pathotype and characterized by a polybasic amino acid sequence motif at the fusion protein (F) cleavage site. This feature also applies to isolate R75/98 from Germany. Its genome consists of 15,192 nucle...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-014-1111-7

    authors： Heiden S,Grund C,Höper D,Mettenleiter TC,Römer-Oberdörfer A

    更新日期：2014-12-01 00:00:00

  • Genomic characterization of a slow/low maedi visna virus.

    abstract：:The complete genomic sequence of a sheep lentivirus isolate that presents a slow/low phenotype in vitro has been determined. The virus, designated P1OLV, was isolated from lung cells of a naturally infected sheep in Portugal. Three overlapping DNA fragments amplified by PCR, and encompassing the entire viral genome we...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1023/B:VIRU.0000036380.01957.37

    authors： Barros SC,Ramos F,Duarte M,Fagulha T,Cruz B,Fevereiro M

    更新日期：2004-10-01 00:00:00

  • A short insert in the leader sequence of RNA 3L, a long variant of Alfalfa mosaic virus RNA3, introduces two unidentified reading frames.

    abstract：:N20-RNA 3L, a large form of RNA 3 associated with Alfalfa mosaic virus (AMV) strain N20 comprises 2281 nt and has approximately 97% overall sequence similarity to the longest previously described RNA 3 of AMV strain YSMV (YSMV-RNA 3; 2188 nt). Compared with YSMV-RNA 3, N20-RNA 3L contains an additional 97 nt in the 5'...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-004-7433-0

    authors： Jayasena KW,Randles JW

    更新日期：2004-12-01 00:00:00

  • Effects of mutations within the SV40 large T antigen ATPase/p53 binding domain on viral replication and transformation.

    abstract：:The simian virus 40 (SV40) large T antigen is a 708 amino-acid protein possessing multiple biochemical activities that play distinct roles in productive infection or virus-induced cell transformation. The carboxy-terminal portion of T antigen includes a domain that carries the nucleotide binding and ATPase activities ...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1023/a:1007941622680

    authors： Peden KW,Srinivasan A,Vartikar JV,Pipas JM

    更新日期：1998-01-01 00:00:00

  • Molecular epidemiology of PRRSV from China's Guangxi Province between 2007 and 2009.

    abstract：:Porcine reproductive and respiratory syndrome (PRRS) is considered to be one of the most important infectious diseases affecting livestock. This study used gene sequence analysis of ORF5 and Nsp2 to determine the molecular epidemiology of PRRSV in different parts of the Guangxi province of China. These genes were sele...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-012-0824-8

    authors： Zhang HY,Liang JJ,Meng XM,Li H,Yang J,Su LJ,Zhang HP,Xie LJ,He XX,Li YS,Yin S,Li XQ,Li XN,Luo TR

    更新日期：2013-02-01 00:00:00

  • Creation of diversity in the animal virus world by inter-species and intra-species recombinations: lessons learned from poultry viruses.

    abstract：:The biological diversity within viruses is one of the largest found in all other forms of nature. Many mechanisms contribute to virus diversity and include incorporating genetic material from the host, recombination between viruses belonging to the same or to a different family, and even recombination between viruses ...

    journal_title：Virus genes

    pub_type： 杂志文章,评审

    doi：10.1007/s11262-007-0165-1

    authors： Davidson I,Silva RF

    更新日期：2008-02-01 00:00:00

  • Rapid detection of highly pathogenic porcine reproductive and respiratory syndrome virus by a fluorescent probe-based isothermal recombinase polymerase amplification assay.

    abstract：:A novel fluorescent probe-based real-time reverse transcription recombinase polymerase amplification (real-time RT-RPA) assay was developed for rapid detection of highly pathogenic type 2 porcine reproductive and respiratory syndrome virus (HP-PRRSV). The sensitivity analysis showed that the detection limit of RPA was...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-016-1378-y

    authors： Yang Y,Qin X,Sun Y,Chen T,Zhang Z

    更新日期：2016-12-01 00:00:00

  • Complete nucleotide sequence and genome organization of a Chinese isolate of Tobacco vein distorting virus.

    abstract：:Tobacco bushy top disease is caused by tobacco bushy top virus (TBTV, a member of the genus Umbravirus) which is dependent on tobacco vein-distorting virus (TVDV) to act as a helper virus encapsidating TBTV and enabling its transmission by aphids. Isometric virions from diseased tobacco plants were purified and diseas...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-010-0524-1

    authors： Mo XH,Chen ZB,Chen JP

    更新日期：2010-12-01 00:00:00

  • Identification of specific amino acid residues of adenovirus 12 E1A involved in transformation and p300 binding.

    abstract：:The early region 1A (E1A) gene of highly oncogenic adenovirus type 12 (Ad12) was analyzed for transforming activity and protein binding using specific mutations. The Ad12 E1A proteins were found to bind p300 protein mainly within the CR1 region, although mutations that affect both p300 binding and transformation were ...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1023/a:1007967009156

    authors： Sawada Y,Ishino M,Miura K,Ohtsuka E,Fujinaga K

    更新日期：1997-01-01 00:00:00

  • Molecular characterization and experimental host range of an isolate of Wissadula golden mosaic St. Thomas virus.

    abstract：:Partial genome segments of a begomovirus were previously amplified from Wissadula amplissima exhibiting yellow-mosaic and leaf-curl symptoms in the parish of St. Thomas, Jamaica and this isolate assigned to a tentative begomovirus species, Wissadula golden mosaic St. Thomas virus. To clone the complete genome of this ...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-009-0401-y

    authors： Collins AM,Mujaddad-ur-Rehman M,Brown JK,Reddy C,Wang A,Fondong V,Roye ME

    更新日期：2009-12-01 00:00:00

  • Glycoprotein K of herpes simplex virus: a transmembrane protein encoded by the UL53 gene which regulates membrane fusion.

    abstract：:Glycoprotein K (gK) encoded by the UL53 gene is the ninth out of eleven HSV glycoproteins (gps). The precursor gK (pgK) is a transmembrane protein with four hydrophobic domains, which consists of 338 amino acids. The UL53 gene has two initiation codons: the upper overlaps with the UL52 ORF, while the lower is located ...

    journal_title：Virus genes

    pub_type： 杂志文章,评审

    doi：10.1023/a:1008025520655

    authors： Rajcáni J,Kúdelová M

    更新日期：1999-01-01 00:00:00

  • Variation analysis of two cucumber mosaic viruses and their associated satellite RNAs from sugar beet in China.

    abstract：:Two cucumber mosaic virus (CMV) isolates XJ1 and XJ2 were obtained from sugar beet showing yellow mosaic symptom in Shihezi, Xinjiang Uigur municipality of China. The coat protein gene of the two CMV isolates and their associated satellite RNAs were amplified by reverse transcriptase polymerase chain reaction (RT-PCR)...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-006-0068-6

    authors： Xi D,Lan L,Wang J,Xu W,Xiang B,Lin H

    更新日期：2006-12-01 00:00:00

  • Characterization of an early gene (wsv477) from shrimp white spot syndrome virus (WSSV).

    abstract：:White spot syndrome virus (WSSV) is one of the most virulent pathogens causing high mortality in shrimp. The viral early genes play a key role in DNA replication and virus proliferation. In this study, a WSSV gene (wsv477) encoding 208 amino acid peptides was characterized as an early gene. The temporal analysis showe...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-006-0053-0

    authors： Han F,Xu J,Zhang X

    更新日期：2007-04-01 00:00:00

  • Genetic variability and evolutionary analyses of the coat protein gene of Tomato mosaic virus.

    abstract：:Tomato mosaic virus (ToMV), a member of the genus Tobamovirus, infects several ornamental and horticultural crops worldwide. In this study, the nucleotide sequences of the coat protein gene of worldwide ToMV isolates were analyzed to estimate the genetic structure and diversity of this virus and the involved evolution...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1007/s11262-011-0651-3

    authors： Rangel EA,Alfaro-Fernández A,Font-San-Ambrosio MI,Luis-Arteaga M,Rubio L

    更新日期：2011-12-01 00:00:00

  • A human vaccine strain of lamb rotavirus (Chinese) NSP4 gene: complete nucleotide sequence and phylogenetic analyses.

    abstract：:A lamb strain of rotavirus has recently been licensed for use in China as a live vaccine to prevent rotavirus diarrhea in children. As rotavirus NSP4, especially the cytotoxic domain alone is considered to be associated with diarrhea, we sequenced gene segment 10, which encodes NSP4, of lamb rotavirus. Comparative ana...

    journal_title：Virus genes

    pub_type： 杂志文章

    doi：10.1023/a:1023491514820

    authors： Mohan KV,Kulkarni S,Glass RI,Zhisheng B,Atreya CD

    更新日期：2003-01-01 00:00:00