Molecular analysis of the hexon, penton base, and fiber-2 genes of Korean fowl adenovirus serotype 4 isolates from hydropericardium syndrome-affected chickens.

Abstract:

:Fowl adenovirus serotype 4 (FAdV-4) is the causative agent of hydropericardium syndrome (HPS), a highly pathogenic disease in poultry. In the present study, hexon, penton base, and fiber-2 genes encoding major capsid proteins were analyzed in four FAdV-4 isolates from HPS-affected chickens in Korea. Nucleotide sequences of the entire hexon (2811 bases), penton base (1578 bases), and fiber-2 (1425 bases) genes from the Korean isolates were 97.5-99.3, 99.1-99.7, and 95.5-99.0 % identical, respectively, to those of foreign FAdV-4 isolates. In the N-terminal tail region of fiber-2, the KRP motif predicted to be the nuclear localization signal was identified in the Korean isolates, whereas KRP/A was detected in other isolates. The VYPF motif in fiber-2, which is known to interact with the penton base, was present in the same region of all FAdV-4 isolates that were compared. Amino acid variations in fiber-2 for HPS and non-HPS isolates revealed that D219 and T300 were conserved among ten HPS isolates from five countries, including Korea. T380 in fiber-2, previously found in HPS isolates, corresponded to A380 in the Korean isolates, indicating that T380 is not relevant for increased virulence. Phylogenetic analysis showed that the four Korean FAdV-4 isolates were more related to MX-SHP95, a Mexican FAdV-4 isolate of HPS origin, than to FAdV-4 isolates of Indian and Chinese origin, suggesting that the genetic relationship among FAdV-4 isolates is independent of geographic distribution. The molecular features of these genes will provide valuable information for vaccine development against HPS in the future.

journal_name

Virus Genes

journal_title

Virus genes

authors

Park HS,Lim IS,Kim SK,Kim TK,Park CK,Yeo SG

doi

10.1007/s11262-016-1393-z

subject

Has Abstract

pub_date

2017-02-01 00:00:00

pages

111-116

issue

1

eissn

0920-8569

issn

1572-994X

pii

10.1007/s11262-016-1393-z

journal_volume

53

pub_type

杂志文章
  • Genetic diversity of Sugarcane bacilliform virus isolates infecting Saccharum spp. in India.

    abstract::Sugarcane bacilliform virus (SCBV), which causes leaf freckle in sugarcane, is a member of the genus Badnavirus. Studies were conducted to characterize SCBV in Saccharum officinarum germplasm and cultivated varieties in India by sequencing the complete genomes of five isolates. Genome lengths ranged from 7,553 to 7,88...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-0890-6

    authors: Karuppaiah R,Viswanathan R,Kumar VG

    更新日期:2013-06-01 00:00:00

  • Phylodynamic analysis of two amino acid substitutions in the hemagglutinin protein of canine distemper virus strains detected in fur-bearing animals in China.

    abstract::Canine distemper virus (CDV) causes a highly contagious disease in a wide range of carnivores. The hemagglutinin (H) protein of viruses shows the highest variability and plays an important role in modulation of viral antigenicity, virulence, and receptor recognition. Since 2012, canine distemper (CD) outbreaks in fur-...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-019-01720-9

    authors: Tao R,Ba H,Chen J,Liu M,Pan H,Li X,Wang Q,Zhao J

    更新日期:2020-02-01 00:00:00

  • Complete nucleotide sequence of the rice tungro spherical virus genome of the highly virulent strain Vt6.

    abstract::The complete nucleotide sequence of rice tungro spherical virus (RTSV) strain Vt6, originally from Mindanao, the Philippines, with higher virulence to resistant rice cultivars, was determined and compared with the published sequence for the Philippine-type strain A (RTSV-A-Shen). It was reported that RTSV-A was not ab...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1008116408733

    authors: Isogai M,Cabauatan PQ,Masuta C,Uyeda I,Azzam O

    更新日期:2000-01-01 00:00:00

  • Nucleotide sequence of the nucleoprotein gene of the RC.HL strain of rabies virus, a seed strain used for animal vaccine production in Japan.

    abstract::By using a phage vector (lambda ZAP II) and the mRNA extracted from IMR-32 cells infected with the RC.HL strain of rabies virus, we constructed a cDNA library from which four nucleoprotein (N)-specific cDNA clones were obtained by Southern blot hybridization. These clones contained a cDNA insert of about 1.4 kb, in wh...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01703607

    authors: Goto H,Minamoto N,Ito H,Sugiyama M,Kinjo T,Mannen K,Mifune K,Kawai A

    更新日期:1994-03-01 00:00:00

  • A local strain of Paprika mild mottle virus breaks L3 resistance in peppers and is accelerated in Tomato brown rugose fruit virus-infected Tm-22-resistant tomatoes.

    abstract::During October 2014, unfamiliar mild mosaic and mottling symptoms were identified on leaves of pepper (Capsicum chinense cv. Habanero) seedlings grown in the Arava valley in Israel 2-3 weeks post planting. Symptomatic plants were tested positive by ELISA using laboratory-produced antisera for tobamovirus species. Typi...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-018-1539-2

    authors: Luria N,Smith E,Sela N,Lachman O,Bekelman I,Koren A,Dombrovsky A

    更新日期:2018-04-01 00:00:00

  • Evolution of feline immunodeficiency virus Gag proteins.

    abstract::We evaluated the predicted biochemical properties of Gag proteins from a diverse group of feline immunodeficiency viruses (FIV) to determine how different evolutionary histories of virus and host have changed or constrained these important structural proteins. Our data are based on FIV sequences derived from domestic ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-006-0058-8

    authors: Burkala E,Poss M

    更新日期:2007-10-01 00:00:00

  • Trends of subtype variation of human immunodeficiency virus type 1 in Zhejiang Province, China.

    abstract::The epidemic characteristics of human immunodeficiency virus type 1 (HIV-1) in Zhejiang Province have not been systematically identified. This study presented a dynamic analysis of HIV-1 subtype variation in Zhejiang from 2004 to 2008, based on the surveillance of molecular epidemiology or drug resistance. CRF01_AE wa...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1136-y

    authors: Yao Y,Xin R,Yang J,Xu Y,Zhang J,Xia Y,Pan X,Guo Z,Song Y

    更新日期:2015-02-01 00:00:00

  • Herpesvirus homologues of cellular genes.

    abstract::For millions of years viruses have adapted strategies to interfere with the immune defense of the host, which in turn has to deal with this challenge. In general the antiviral defense remains one step behind the pathogen. To achieve this strategic advantage large DNA-containing Viruses encode cellular homologues that ...

    journal_title:Virus genes

    pub_type: 杂志文章,评审

    doi:

    authors: Raftery M,Müller A,Schönrich G

    更新日期:2000-01-01 00:00:00

  • Characterisation of a satellite RNA of Cucumber mosaic virus that induces chlorosis in Capsicum annuum.

    abstract::The presence of Cucumber mosaic virus (CMV) satellite RNA dramatically changes symptoms on some hosts. A satellite RNA present in a strain of CMV (PepY-CMV) that induced chlorosis in pepper (Capsicum annuum) was shown to induce chlorosis in pepper in combination with another strain (Fny-CMV) that by itself induced a g...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0608-6

    authors: Choi SK,Jeon YW,Yoon JY,Choi JK

    更新日期:2011-08-01 00:00:00

  • Sequence and phylogenetic analysis of the large (L) segment of the Tahyna virus genome.

    abstract::The Tahyna virus (TAHV) is an important human pathogen in the Bunyaviridae family. To date, only the S and M segments of this virus have been sequenced, but the sequence of the L segment hasn't been established yet. In this study, we sequenced 963 nucleotides of the L segment of TAHV, comprising pre-motif A and motif ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0212-6

    authors: Quinan BR,de Brito Magalhães CL,Novaes RF,Dos Santos JR,Kroon EG,Bonjardim CA,Ferreira PC

    更新日期:2008-06-01 00:00:00

  • Sequence of Echinochloa hoja blanca tenuivirus RNA-4.

    abstract::The sequence is presented of RNA-4 of Echinochloa hoja blanca tenuivirus (EHBV), one of two tenuiviruses associated with rice cultivation in Latin America (together with rice hoja blanca virus; RHBV). Analysis of the sequence shows that the coding regions of EHBV RNA-4 are closely related to those of RHBV RNA-4. Howev...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00576979

    authors: de Miranda JR,Muñoz M,Wu R,Espinoza AM

    更新日期:1996-01-01 00:00:00

  • Characterization and complete genome sequence analysis of Staphylococcus aureus bacteriophage SA12.

    abstract::Staphylococcus aureus is a well-known pathogen that causes several serious diseases in humans and animals. As part of the efforts to control this pathogen, a newly isolated bacteriophage, SA12, which specifically targets S. aureus, was characterized, and its genome was completely sequenced. Host range and bacteriophag...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-0938-7

    authors: Chang Y,Lee JH,Shin H,Heu S,Ryu S

    更新日期:2013-10-01 00:00:00

  • Complete nucleotide sequence and genome organization of a Chinese isolate of Tobacco vein distorting virus.

    abstract::Tobacco bushy top disease is caused by tobacco bushy top virus (TBTV, a member of the genus Umbravirus) which is dependent on tobacco vein-distorting virus (TVDV) to act as a helper virus encapsidating TBTV and enabling its transmission by aphids. Isometric virions from diseased tobacco plants were purified and diseas...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-010-0524-1

    authors: Mo XH,Chen ZB,Chen JP

    更新日期:2010-12-01 00:00:00

  • Unique evolution characteristics of the envelope protein of EIAV(LN₄₀), a virulent strain of equine infectious anemia virus.

    abstract::The Chinese equine infectious anemia virus (EIAV) virulent strain EIAV(LN40) is derived from a naturally occurring virus by continuously passing in horses for 16 generations. Its genome sequence is 23% different from that of the American strains or the Japanese strains, and the variation of envelope gp90 surface unit ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-010-0563-7

    authors: Wang X,Wang S,Lin Y,Jiang C,Ma J,Zhao L,Lv X,Wang F,Shen R,Zhou J

    更新日期:2011-04-01 00:00:00

  • Genetic characterization of bovine coronavirus in Vietnam.

    abstract::A maximum clade credibility tree constructed using the full-length spike (S) and hemagglutinin-esterase genes revealed that Vietnamese Bovine coronavirus (BCoV) strains belong to a single cluster (C1); therefore, they might share a common origin with Cuban and Chinese BCoV strains. The omega values of cluster 1 (C1) a...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-019-01647-1

    authors: Shin J,Tark D,Le VP,Choe S,Cha RM,Park GN,Cho IS,Nga BTT,Lan NT,An DJ

    更新日期:2019-06-01 00:00:00

  • Full genome sequence of a Sathuvachari virus strain isolated in the southwestern-most archipelago of Japan.

    abstract::Two virus strains, tentatively designated as ON-6/P/05 and ON-7/E/05, were isolated from blood samples of healthy cattle in the Yaeyama Islands, located in the southwestern-most region of Japan, in 2005. Ultrastructural observations of infected baby hamster (BHK-21) cells revealed that the viruses had features consist...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-018-1592-x

    authors: Kato T,Aizawa M,Takayoshi K,Yanase T,Tanaka S,Shirafuji H,Yamakawa M

    更新日期:2018-10-01 00:00:00

  • Complete genomic sequence and phylogenetic relatedness of hepatitis B virus isolates in Cambodia.

    abstract::Although it is known that Cambodia is one of the high endemic area of hepatitis B virus (HBV) infection, molecular characterization of HBV circulating in this country has not been reported. In this study, pre-S gene of HBV from 12 Cambodian patients was sequenced. Phylogenetic analysis based on the pre-S gene sequence...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0205-5

    authors: Huy TT,Sall AA,Reynes JM,Abe K

    更新日期:2008-04-01 00:00:00

  • The selection pressure analysis of chicken anemia virus structural protein gene VP1.

    abstract::Chicken anemia virus (CAV) is the pathogen of chicken infectious anemia. To clarify the driving force in CAV evolution, we have detected positive selection in the structural protein gene VP1 by using maximum-likelihood models. Strong evidence was found that VP1 proteins were subject to the high rates of positive selec...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0316-z

    authors: Wang D,Fan W,Han GZ,He CQ

    更新日期:2009-04-01 00:00:00

  • Capsid protein diversity among Norwalk-like viruses.

    abstract::We have determined the complete capsid gene sequence of 20 Norwalk-like viruses (NLVs) collected predominantly from outbreaks in the UK between 1989 and 1996. These comprised nine genogroup I and eleven genogroup II strains. Phylogenetic analysis of these and 15 published sequences suggest seven genomic sub-groups wit...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1008140611929

    authors: Green J,Vinje J,Gallimore CI,Koopmans M,Hale A,Brown DW,Clegg JC,Chamberlain J

    更新日期:2000-01-01 00:00:00

  • Phylogenetic comparison and molecular epidemiology of classical swine fever virus.

    abstract::The genetic diversity of classical swine fever virus (CSFV) was studied by RT-PCR amplification and sequencing of a 409 bp fragment of the NS5B polymerase region. A total of 106 viruses isolated from 20 countries over a period of 52 years (1945-1997) were included in the phylogenetic study. The results showed that the...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1008132613228

    authors: Björklund H,Lowings P,Stadejek T,Vilcek S,Greiser-Wilke I,Paton D,Belák S

    更新日期:1999-01-01 00:00:00

  • Evolution of surface and nonstructural-1 genes of influenza B viruses isolated in the Province of Québec, Canada, during the 1998-2001 period.

    abstract::After 2 minor winter seasons, influenza B viruses were predominantly isolated in the Province of Quebec, Canada, during the 2000-2001 season representing 74% of laboratory-confirmed influenza viruses. We performed an antigenic study of the hemagglutinin (HA) protein and a molecular characterization of the HA1 region, ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1025768308631

    authors: Abed Y,Coulthart MB,Li Y,Boivin G

    更新日期:2003-10-01 00:00:00

  • A sensitive duplex nanoparticle-assisted PCR assay for identifying porcine epidemic diarrhea virus and porcine transmissible gastroenteritis virus from clinical specimens.

    abstract::In this study, a novel duplex nanoparticle-assisted polymerase chain reaction (nanoPCR) assay was developed to detect porcine epidemic diarrhea virus (PEDV) and porcine transmissible gastroenteritis virus (TGEV). Two pairs of primers were designed based on the conserved region within the N gene of PEDV and TGEV. In a ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1405-z

    authors: Zhu Y,Liang L,Luo Y,Wang G,Wang C,Cui Y,Ai X,Cui S

    更新日期:2017-02-01 00:00:00

  • A novel fusarivirus isolated from the phytopathogenic fungus Nigrospora oryzae.

    abstract::In this study, we report the discovery and molecular characterization of a novel mycovirus, Nigrospora oryzae fusarivirus 1 (NoFV1) isolated from the rice-infecting fungus Nigrospora oryzae. Excluding a poly (A) tail, the genome of the virus is 7004 nucleotide (nt) long containing three putative nonoverlapping open re...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1371-5

    authors: Zhong J,Zhao SQ,Li GF,Pang XD,Deng XJ,Zhu HJ,Da Gao B,Zhou Q

    更新日期:2016-12-01 00:00:00

  • Sera of Peruvians with fever of unknown origins include viral nucleic acids from non-vertebrate hosts.

    abstract::Serum samples collected from 88 Peruvians with unexplained fever were analyzed for viral sequences using metagenomics. Nucleic acids of anelloviruses, pegivirus A (GBV-C), HIV, Dengue virus, and Oropouche virus were detected. We also characterized from two sera the RNA genomes of new species of partitivirus and dicist...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-017-1514-3

    authors: Phan TG,Del Valle Mendoza J,Sadeghi M,Altan E,Deng X,Delwart E

    更新日期:2018-02-01 00:00:00

  • hycu-hr6, A large homologous region of the Hyphantria cunea nucleopolyhedrovirus genome, as a powerful and versatile enhancer in insect expression systems.

    abstract::We previously identified a large homologous region (hr), hycu-hr6, in the genome of the Hyphantria cunea nucleopolyhedrovirus (HycuNPV) and suggested that hycu-hr6 was the largest baculovirus promoter enhancer hr identified so far. In this study, we examined the enhancement activity of hycu-hr6 against two promoters f...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0406-6

    authors: Felipe Alves CA,Ishikawa H,Ikeda M,Kobayashi M

    更新日期:2009-12-01 00:00:00

  • Prevalence and genotyping of group 3 torque teno viruses detected in health care workers in Hungary.

    abstract::Torque teno viruses (TTVs) are classified into the Anellovirus genus of the Circoviridae family. In addition to TTV isolates, TTV genogroup 3 also includes the 8 virus strains known as SENV-A to H. In this study, the prevalence of TTV group 3 viruses and that of SENV-D and H in particular were determined among the sta...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0369-7

    authors: Dencs A,Hettmann A,Szomor KN,Kis Z,Takács M

    更新日期:2009-08-01 00:00:00

  • Characterization of H5N1 highly pathogenic avian influenza viruses isolated from poultry in Pakistan 2006-2008.

    abstract::Nine avian influenza viruses (AIV), H5N1 subtype, were isolated from dead poultry in the Karachi region of Pakistan from 2006 to 2008. The intravenous pathogenicity indices and HA protein cleavage sites of all nine viruses were consistent with highly pathogenic AIV. Based on phylogenetic analysis of the HA genes, thes...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0689-2

    authors: Wasilenko JL,Pantin-Jackwood M,Khan TA,Ahmed A,Rehmani SF,Lone NA,Swayne DE,Spackman E

    更新日期:2012-04-01 00:00:00

  • Artesunate, an anti-malarial drug, has a potential to inhibit HCV replication.

    abstract::Hepatitis C virus (HCV) infection is a major global health issue. Although the search for HCV treatments has resulted in great achievements, the current treatment methods have limitations, and new methods and drugs for hepatitis C treatment are still required. The aim of the present study was to investigate the effect...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-015-1285-7

    authors: Dai R,Xiao X,Peng F,Li M,Gong G

    更新日期:2016-02-01 00:00:00

  • Identification and characterization of a novel Tritimovirus species isolated from wild Trisetum flavescens L., family Poaceae.

    abstract::Yellow oat-grass plants (Trisetum flavescens L.) with mild mosaic and pronounced dwarfing symptoms were observed at different locations in the Czech Republic. Electron microscope observations of symptomatic plants revealed the presence of filamentous particles and inclusion bodies characteristic of the family Potyviri...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0373-y

    authors: Hassan M,Sirlova L,Jokes M,Vacke J

    更新日期:2009-08-01 00:00:00

  • A live gI/gE-deleted pseudorabies virus (PRV) protects weaned piglets against lethal variant PRV challenge.

    abstract::Emerging pseudorabies virus (PRV) variant has led to frequent outbreaks of PRV infection among Bartha-K61-vaccinated swine population in Chinese swine farms and caused high mortality in pigs of all age since late 2011. Here, we generated a gE/gI-deleted PRV (rPRVXJ-delgI/gE-EGFP) based on PRV variant strain (PRV-XJ) t...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-017-1454-y

    authors: Yin Y,Xu Z,Liu X,Li P,Yang F,Zhao J,Fan Y,Sun X,Zhu L

    更新日期:2017-08-01 00:00:00