High-resolution free energy landscape analysis of protein folding.

Abstract:

:The free energy landscape can provide a quantitative description of folding dynamics, if determined as a function of an optimally chosen reaction coordinate. The profile together with the optimal coordinate allows one to directly determine such basic properties of folding dynamics as the configurations of the minima and transition states, the heights of the barriers, the value of the pre-exponential factor and its relation to the transition path times. In the present study, we review the framework, in particular, the approach to determine such an optimal coordinate, and its application to the analysis of simulated protein folding dynamics.

journal_name

Biochem Soc Trans

authors

Banushkina PV,Krivov SV

doi

10.1042/BST20140260

subject

Has Abstract

pub_date

2015-04-01 00:00:00

pages

157-61

issue

2

eissn

0300-5127

issn

1470-8752

pii

BST20140260

journal_volume

43

pub_type

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