Translation initiation in the crenarchaeon Sulfolobus solfataricus: eukaryotic features but bacterial route.

Abstract:

:The formation of the translation initiation complex represents the rate-limiting step in protein synthesis. Translation initiation in the crenarchaeon Sulfolobus solfataricus depends on several translation IFs (initiation factors), some of which have eukaryal but no bacterial counterparts. In the present paper, we review the current knowledge of the structure, function and evolution of the IFs in S. solfataricus in the context of eukaryotic and bacterial orthologues. Despite similarities between eukaryotic and S. solfataricus IFs, the sequence of events in translation initiation in S. solfataricus follows the bacterial mode.

journal_name

Biochem Soc Trans

authors

La Teana A,Benelli D,Londei P,Bläsi U

doi

10.1042/BST20120300

subject

Has Abstract

pub_date

2013-02-01 00:00:00

pages

350-5

issue

1

eissn

0300-5127

issn

1470-8752

pii

BST20120300

journal_volume

41

pub_type

杂志文章,评审
  • Genomic instability and cancer: lessons from analysis of Bloom's syndrome.

    abstract::Bloom's syndrome (BS) is a rare autosomal recessive disorder characterized by genomic instability and cancer predisposition. The underlying genetic defect is mutation of the BLM gene, producing deficiency in the RecQ helicase BLM (Bloom's syndrome protein). The present article begins by introducing BLM and its binding...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0370553

    authors: Payne M,Hickson ID

    更新日期:2009-06-01 00:00:00

  • Chromosome positioning is largely unaffected in lymphoblastoid cell lines containing emerin or A-type lamin mutations.

    abstract::Gene-poor human chromosomes are reproducibly found at the nuclear periphery in proliferating cells. There are a number of inner nuclear envelope proteins that may have roles in chromosome location and anchorage, e.g. emerin and A-type lamins. In the last decade, a number of diseases associated with tissue degeneration...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20051438

    authors: Meaburn KJ,Levy N,Toniolo D,Bridger JM

    更新日期:2005-12-01 00:00:00

  • Oxidative modification of triacylglycerol-rich lipoproteins.

    abstract::Lipoprotein oxidation is thought to play a pivotal role in the evolution of atherosclerosis. Low-density lipoprotein (LDL) is the main source of oxidized lipid in the arterial wall. Oxidation of LDL alters its properties in a number of ways, making it more atherogenic, but oxidation of other lipoprotein classes may al...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0311062

    authors: Young IS,McFarlane C,McEneny J

    更新日期:2003-10-01 00:00:00

  • New aspects in cardiac L-type Ca2+ channel regulation.

    abstract::Cardiac excitation-contraction coupling is initiated with the influx of Ca2+ ions across the plasma membrane through voltage-gated L-type calcium channels. This process is tightly regulated by modulation of the channel open probability and channel localization. Protein kinase A (PKA) is found in close association with...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20190229

    authors: Pallien T,Klussmann E

    更新日期:2020-02-28 00:00:00

  • LMNA-linked lipodystrophies: from altered fat distribution to cellular alterations.

    abstract::Mutations in the LMNA gene, encoding the nuclear intermediate filaments the A-type lamins, result in a wide variety of diseases known as laminopathies. Some of them, such as familial partial lipodystrophy of Dunnigan and metabolic laminopathies, are characterized by lipodystrophic syndromes with altered fat distributi...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20110675

    authors: Bidault G,Vatier C,Capeau J,Vigouroux C,Béréziat V

    更新日期:2011-12-01 00:00:00

  • A reductionist approach to model photosynthetic self-regulation in eukaryotes in response to light.

    abstract::Along with the development of several large-scale methods such as mass spectrometry or micro arrays, genome wide models became not only a possibility but an obvious tool for theoretical biologists to integrate and analyse complex biological data. Nevertheless, incorporating the dynamics of photosynthesis remains one o...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20150136

    authors: Matuszyńska A,Ebenhöh O

    更新日期:2015-12-01 00:00:00

  • Characterization of AWAP IV, the C-terminal domain of the avian protein AWAK.

    abstract::AWAP IV constitutes the C-terminal domain of the larger 81 kDa protein AWAK [Avian WAP (whey acidic protein) domain- and Kunitz domain-containing], which is predicted, through conserved domain database searching, to contain at least four WAP domains and one Kunitz domain. RT (reverse transcription)-PCR analyses reveal...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20060267

    authors: Townes CL,Milona P,Hall J

    更新日期:2006-04-01 00:00:00

  • Searching for the ideal forms of proteins.

    abstract::A modification of the Structure Alignment Program (SAP), combined with a novel automatic method for the definition of structural elements, correctly identified the core folds of a variety of small beta/alpha proteins when compared with a series of ideal architectures. This approach opens the possibility of not just de...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/bst0280264

    authors: Taylor WR

    更新日期:2000-02-01 00:00:00

  • Role of the phosphoinositide pathway in the light-dependent C4 phosphoenolpyruvate carboxylase phosphorylation cascade in Digitaria sanguinalis protoplasts.

    abstract::Stimulus-response coupling in animal cells frequently involves the hydrolysis of PtdIns(4,5)P(2) which is catalysed by phosphoinositide-specific phospholipase C (PI-PLC). There is an increasing body of evidence for PI-PLC-based signalling in plant cells; however, the physiological role of this system remains poorly do...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:

    authors: Coursol S,Pierre JN,Vidal J

    更新日期:2000-12-01 00:00:00

  • Residual dipolar couplings as a tool to study molecular recognition of ubiquitin.

    abstract::RDCs (residual dipolar couplings) in NMR spectroscopy provide information about protein dynamics complementary to NMR relaxation methods, especially in the previously inaccessible time window between the protein correlation time tau(c) and 50 micros. For ubiquitin, new modes of motion of the protein backbone could be ...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0361433

    authors: Lakomek NA,Lange OF,Walter KF,Farès C,Egger D,Lunkenheimer P,Meiler J,Grubmüller H,Becker S,de Groot BL,Griesinger C

    更新日期:2008-12-01 00:00:00

  • Transcriptional regulation by the dedicated nitric oxide sensor, NorR: a route towards NO detoxification.

    abstract::A flavorubredoxin and its associated oxidoreductase (encoded by norV and norW respectively) detoxify NO (nitric oxide) to form N2O (nitrous oxide) under anaerobic conditions in Escherichia coli. Transcription of the norVW genes is activated in response to NO by the σ54-dependent regulator and dedicated NO sensor, NorR...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0390289

    authors: Bush M,Ghosh T,Tucker N,Zhang X,Dixon R

    更新日期:2011-01-01 00:00:00

  • Pi sensing and signalling: from prokaryotic to eukaryotic cells.

    abstract::Phosphorus is one of the most important macronutrients and is indispensable for all organisms as a critical structural component as well as participating in intracellular signalling and energy metabolism. Sensing and signalling of phosphate (Pi) has been extensively studied and is well understood in single-cellular or...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20160026

    authors: Qi W,Baldwin SA,Muench SP,Baker A

    更新日期:2016-06-15 00:00:00

  • Molecular characterization of substrate-binding sites in the glutamate transporter family.

    abstract::Glutamate transporters are essential for terminating synaptic excitation and for maintaining extracellular glutamate concentrations below neurotoxic levels. These transporters also mediate a thermodynamically uncoupled chloride flux that is activated by two of the molecules that they transport - sodium and glutamate. ...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/0300-5127:0290707

    authors: Kanner BI,Kavanaugh MP,Bendahan A

    更新日期:2001-11-01 00:00:00

  • SLPI and trappin-2 as therapeutic agents to target airway serine proteases in inflammatory lung diseases: current and future directions.

    abstract::It is now clear that NSPs (neutrophil serine proteases), including elastase, Pr3 (proteinase 3) and CatG (cathepsin G) are major pathogenic determinants in chronic inflammatory disorders of the lungs. Two unglycosylated natural protease inhibitors, SLPI (secretory leucocyte protease inhibitor) and elafin, and its prec...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0391441

    authors: Zani ML,Tanga A,Saidi A,Serrano H,Dallet-Choisy S,Baranger K,Moreau T

    更新日期:2011-10-01 00:00:00

  • Regulation of gene expression by the RNA-binding protein Sam68 in cancer.

    abstract::Sam68 (Src-associated in mitosis 68 kDa) is the prototypical member of the STAR (signal transducer and activator of RNA) family of RNA-binding proteins. Sam68 is implicated in a number of cellular processes including signal transduction, transcription, RNA metabolism, cell cycle regulation and apoptosis. In the presen...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0360505

    authors: Rajan P,Gaughan L,Dalgliesh C,El-Sherif A,Robson CN,Leung HY,Elliott DJ

    更新日期:2008-06-01 00:00:00

  • The role of the Wilms' tumour-suppressor protein WT1 in apoptosis.

    abstract::The Wilms' tumour-suppressor gene (WT1), encodes a zinc-finger transcription factor that is critical for the development of several organs, including the kidneys, gonads and spleen. Despite its identification as a tumour suppressor that plays a crucial role in the formation of a paediatric malignancy of the kidneys (W...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0360629

    authors: Hartkamp J,Roberts SG

    更新日期:2008-08-01 00:00:00

  • Genomic DNA amplification by the multiple displacement amplification (MDA) method.

    abstract::Large amounts of DNA are frequently required for use in detection assays and genomic analysis. The limited availability of DNA can be a critical obstacle to meeting research and clinical needs. DNA amplification methods are often required to generate sufficient material from small specimens or environmental samples wi...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0370450

    authors: Lasken RS

    更新日期:2009-04-01 00:00:00

  • TRP channels activated by extracellular hypo-osmoticity in epithelia.

    abstract::TRP (transient receptor potential) channels comprise a superfamily of non-selective cation channels with at least seven subfamilies. The variety of subfamilies corresponds to the differences in the activation mechanisms and functions. TRPM3 (TRP melastatin 3) and TRPV4 (TRP vanilloid 3) have been characterized as cati...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0350091

    authors: Harteneck C,Reiter B

    更新日期:2007-02-01 00:00:00

  • Infusion of plasma-derived mannan-binding lectin (MBL) into MBL-deficient humans.

    abstract::Our first experience of mannan-binding lectin (MBL)-replacement therapy was with a patient experiencing recurrent erythema multiforme associated with reactivation of herpes simplex virus; his erythematous eruptions could be controlled with infusions of fresh frozen plasma containing MBL, but not with plasma lacking MB...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/bst0310768

    authors: Valdimarsson H

    更新日期:2003-08-01 00:00:00

  • Inhibitors in AKTion: ATP-competitive vs allosteric.

    abstract::Aberrant activation of the PI3K pathway is one of the commonest oncogenic events in human cancer. AKT is a key mediator of PI3K oncogenic function, and thus has been intensely pursued as a therapeutic target. Multiple AKT inhibitors, broadly classified as either ATP-competitive or allosteric, are currently in various ...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20190777

    authors: Lazaro G,Kostaras E,Vivanco I

    更新日期:2020-06-30 00:00:00

  • The N-glycan glucosidase system in Trypanosoma brucei.

    abstract::Reactions involving removal and addition of glucose to N-glycans in the ER (endoplasmic reticulum) are performed in higher eukaryotes by glucosidases I and II and the UDP-glucose:glycoprotein glucosyltransferase respectively. Monoglucosylated N-glycan structures have been implicated in glycoprotein folding or ER quali...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0320766

    authors: Jones D,Mehlert A,Ferguson MA

    更新日期:2004-11-01 00:00:00

  • Inverted-repeat DNA: a new gene-silencing tool for seed lipid modification.

    abstract::Post-transcriptional gene silencing (PTGS) has been successfully used to modify seed lipids in oilseed crops like soybean, canola and sunflower. Conventionally, PTGS has been induced by transforming the plants with either antisense or co-suppression constructs targeted against key seed lipid biosynthesis genes. A majo...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:

    authors: Singh S,Green A,Stoutjesdijk P,Liu Q

    更新日期:2000-12-01 00:00:00

  • Emerging role of Alzheimer's disease-associated ubiquilin-1 in protein aggregation.

    abstract::Abnormal protein aggregation and intracellular or extracellular accumulation of misfolded and aggregated proteins are key events in the pathogenesis of different neurodegenerative diseases. Furthermore, endoplasmic reticulum stress and impairment of the ubiquitin-proteasome system probably contribute to neurodegenerat...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0380150

    authors: Haapasalo A,Viswanathan J,Bertram L,Soininen H,Tanzi RE,Hiltunen M

    更新日期:2010-02-01 00:00:00

  • Homologous recombination in the archaea: the means justify the ends.

    abstract::The process of information exchange between two homologous DNA duplexes is known as homologous recombination (HR) or double-strand break repair (DSBR), depending on the context. HR is the fundamental process underlying the genome shuffling that expands genetic diversity (for example during meiosis in eukaryotes). DSBR...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0390015

    authors: White MF

    更新日期:2011-01-01 00:00:00

  • Cation transport by the respiratory NADH:quinone oxidoreductase (complex I): facts and hypotheses.

    abstract::The respiratory complex I (electrogenic NADH:quinone oxidoreductase) has been considered to act exclusively as a H+ pump. This was questioned when the search for the NADH-driven respiratory Na+ pump in Klebsiella pneumoniae initiated by Peter Dimroth led to the discovery of a Na+-translocating complex in this enteroba...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20130024

    authors: Steffen W,Steuber J

    更新日期:2013-10-01 00:00:00

  • An evolutionary perspective on protein moonlighting.

    abstract::Moonlighting proteins serve one or more novel functions in addition to their canonical roles. Moonlighting functions arise when an adventitious interaction between a protein and a new partner improves fitness of the organism. Selective pressure for improvement in the new function can result in two alternative outcomes...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20140245

    authors: Copley SD

    更新日期:2014-12-01 00:00:00

  • The role of ResA in type II cytochrome c maturation.

    abstract::Numerous bacterial proteins involved in the nitrogen cycle, and other processes, require c-type haem as a cofactor. c-type cytochromes are formed by covalent attachment of haem to the conserved CXXCH motif. Here, we briefly review what is presently known about cytochrome c maturation in Bacillus subtilis with particul...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0330149

    authors: Crow A,Le Brun NE,Oubrie A

    更新日期:2005-02-01 00:00:00

  • The zDHHC family of S-acyltransferases.

    abstract::The discovery of the zDHHC family of S-acyltransferase enzymes has been one of the major breakthroughs in the S-acylation field. Now, more than a decade since their discovery, major questions centre on profiling the substrates of individual zDHHC enzymes (there are 24 ZDHHC genes and several hundred S-acylated protein...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20140270

    authors: Lemonidis K,Werno MW,Greaves J,Diez-Ardanuy C,Sanchez-Perez MC,Salaun C,Thomson DM,Chamberlain LH

    更新日期:2015-04-01 00:00:00

  • Properties and inhibition of the first two enzymes of the non-mevalonate pathway of isoprenoid biosynthesis.

    abstract::Enzymes of the 1-deoxy-D-xylulose 5-phosphate/2-C-methylerythritol 4-phosphate (DOXP/MEP) pathway are targets for new herbicides and antibacterial drugs. Until now, no inhibitors for the DOXP synthase have been known of. We show that one of the breakdown products of the herbicide clomazone affects the DOXP synthase. O...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:

    authors: Mueller C,Schwender J,Zeidler J,Lichtenthaler HK

    更新日期:2000-12-01 00:00:00

  • 'Rumours of my death may have been greatly exaggerated': a brief review of cell death in human intervertebral disc disease and implications for cell transplantation therapy.

    abstract::The avascular nature of the human intervertebral disc is thought to reduce the ability of resident disc cells to maintain their extracellular matrix, rendering the tissue susceptible to degeneration. It has also been suggested that the lack of a blood supply may result in disc cell death via nutrient deprivation. Ther...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0350680

    authors: Johnson WE,Roberts S

    更新日期:2007-08-01 00:00:00