Genome-wide validation of Magnaporthe grisea gene structures based on transcription evidence.

Abstract:

:Accurate cDNA data is useful to validate gene structures in a genome. We sequenced 35189 expressed sequence tags (ESTs) obtained from the highly destructive rice blast fungus, Magnaporthe grisea. Our custom-made computational programs mapped these ESTs on the M. grisea genome sequence, and reconstructed gene structures as well as protein-coding regions. As a result, we predicted 4480 protein-coding sequences, which were more accurate than ab initio predictions. Moreover, cross-species comparisons suggested that our predicted proteins were nearly complete. The cDNA clones obtained in this study will be important for further experimental studies. Our genome annotation is available at http://www.mg.dna.affrc.go.jp/.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Numa H,Nishimura M,Tanaka T,Kanamori H,Yang CC,Matsumoto T,Nagamura Y,Itoh T

doi

10.1016/j.febslet.2009.01.041

subject

Has Abstract

pub_date

2009-02-18 00:00:00

pages

797-800

issue

4

eissn

0014-5793

issn

1873-3468

pii

S0014-5793(09)00075-1

journal_volume

583

pub_type

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