Identification of putative genes involved in the development of Tuber borchii fruit body by mRNA differential display in agarose gel.

Abstract:

:In order to analyse gene expression during fruit body development of the ectomychorrizal fungus Tuber borchii Vittad., a modified differential display procedure was set up. The procedure used is easier and faster than the traditional one and generates reproducible cDNA banding patterns that can be resolved on a standard ethidium bromide-agarose gel. From 16 cDNA fingerprints, 25 amplicons with apparent differential expression were identified and cloned without a previous reamplification. Fifteen clones showed significant similarity to known proteins that are involved in dikaryosis and fruiting, cell division, transport across membranes, mitochondrial division, intermediary metabolism, biosynthesis of isoprenoid compounds and putative RNA/DNA binding. Northern blot analyses confirmed that seven cDNAs were indeed differentially expressed during fruit body development. The characterisation of these cDNAs represents a starting point in understanding the molecular mechanisms of cellular differentiation leading to the development of the T. borchii fruit body.

journal_name

Curr Genet

journal_title

Current genetics

authors

Zeppa S,Guidi C,Zambonelli A,Potenza L,Vallorani L,Pierleoni R,Sacconi C,Stocchi V

doi

10.1007/s00294-002-0343-6

subject

Has Abstract

pub_date

2002-12-01 00:00:00

pages

161-8

issue

3

eissn

0172-8083

issn

1432-0983

journal_volume

42

pub_type

杂志文章
  • Ubiquitin-like activating enzymes BcAtg3 and BcAtg7 participate in development and pathogenesis of Botrytis cinerea.

    abstract::In eukaryotes, the ubiquitin-like (UBL) protein-activating enzymes play a crucial role in autophagy process, however, it is poorly characterized in filamentous fungi. Here, we investigated the functions of two UBL activating enzymes, BcAtg3 (E2) and BcAtg7 (E1) in the plant pathogenic fungus Botrytis cinerea. The phys...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s00294-018-0810-3

    authors: Ren W,Sang C,Shi D,Song X,Zhou M,Chen C

    更新日期:2018-08-01 00:00:00

  • A Saccharomyces paradox: chromosomes from different species are incompatible because of anti-recombination, not because of differences in number or arrangement.

    abstract::Many species are able to hybridize, but the sterility of these hybrids effectively prevents gene flow between the species, reproductively isolating them and allowing them to evolve independently. Yeast hybrids formed by Saccharomyces cerevisiae and Saccharomyces paradoxus parents are viable and able to grow by mitosis...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-019-01038-x

    authors: Ono J,Greig D

    更新日期:2020-06-01 00:00:00

  • Cloning of the mating type locus from Ascochyta lentis (teleomorph: Didymella lentis) and development of a multiplex PCR mating assay for Ascochyta species.

    abstract::The mating type (MAT) locus of the lentil pathogen, Ascochyta lentis, was cloned and characterized using thermal asymmetric interlaced and inverse PCR with primers designed to the HMG-box of Ascochyta rabiei. A multiplex PCR assay for mating type was developed based on MAT idiomorph and flanking sequences. Primers wer...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s00294-006-0085-y

    authors: Chérif M,Chilvers MI,Akamatsu H,Peever TL,Kaiser WJ

    更新日期:2006-09-01 00:00:00

  • Nuclear omnipotent suppressors of premature termination codons in mitochondrial genes affect the 37S mitoribosomal subunit.

    abstract::nam3 and R705, yeast nuclear omnipotent suppressors of mitochondrial mit- mutations, reverse the superimposed spectrum of trans-recessive splicing defects by affecting the protein composition of the small mitoribosomal subunit. Analysis of the suppressor's interaction suggests that suppression results from mutations i...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00365647

    authors: Boguta M,Mieszczak M,Zagórski W

    更新日期:1988-02-01 00:00:00

  • Characterization of blasticidin S-resistant mutants of Saccharomyces cerevisiae.

    abstract::Blasticidin S-resistant mutants of S. cerevisiae were isolated and characterized. Resistant mutations were found to fall into two complementation groups. A single recessive nuclear gene was responsible for each group, donated as bls1 and bls2, respectively. A gene bls1 was linked to an ilv3 gene located on the right a...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00436968

    authors: Ishiguro J,Miyazaki M

    更新日期:1985-01-01 00:00:00

  • Frequent site-specific mit- deletions at cryptic exon-intron junctions in the COX1 gene of yeast mtDNA.

    abstract::A class of large site-specific deletions (del-B) occurs with exceptionally-high frequencies of 10(-3) in the mitochondrial COX1 gene of Mn(2+)-treated yeast cells. This work shows that del-B deletions are associated with COX1 intron aI1. All five deletion mutants studied have their upstream end at the authentic 3' spl...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00309947

    authors: Weiller GF

    更新日期:1994-11-01 00:00:00

  • Multifaceted activities of DNA polymerase η: beyond translesion DNA synthesis.

    abstract::DNA polymerases are evolved to extend the 3'-OH of a growing primer annealed to a template DNA substrate. Since replicative DNA polymerases have a limited role while replicating structurally distorted template, translesion DNA polymerases mostly from Y-family come to the rescue of stalled replication fork and maintain...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-018-0918-5

    authors: Acharya N,Manohar K,Peroumal D,Khandagale P,Patel SK,Sahu SR,Kumari P

    更新日期:2019-06-01 00:00:00

  • The functions of the multi-tasking Pfh1Pif1 helicase.

    abstract::Approximately, 1% of the genes in eukaryotic genomes encode for helicases, which make the number of helicases expressed in the cell considerably high. Helicases are motor proteins that participate in many central aspects of the nuclear and mitochondrial genomes, and based on their helicase motif conservation, they are...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-016-0675-2

    authors: Sabouri N

    更新日期:2017-08-01 00:00:00

  • RNA silencing in Chlamydomonas: mechanisms and tools.

    abstract::The generation of a comprehensive EST library and the sequencing of its genome set the stage for reverse genetics approaches in Chlamydomonas reinhardtii. However, these also require tools for the specific downregulation of target gene expression. Consequently, a large number of diverse constructs were developed aimed...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-005-0042-1

    authors: Schroda M

    更新日期:2006-02-01 00:00:00

  • Genetic transformation of Ascochyta rabiei using Agrobacterium-mediated transformation.

    abstract::In order to study pathogenic mechanisms of the plant pathogen Ascochyta rabiei, conditions for efficient transformation using Agrobacterium-mediated transformation were investigated. Hygromycin B resistance (hph) was superior to geneticin resistance (nptII) for selecting transformants, and the hph gene was more effici...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s00294-005-0048-8

    authors: White D,Chen W

    更新日期:2006-04-01 00:00:00

  • Heterologous expression of a pleiotropic drug resistance transporter from Phytophthora sojae in yeast transporter mutants.

    abstract::A system for the expression of an ATP binding cassette (ABC) transporter from the soybean pathogen Phytophthora sojae is described. Pdr1, an ABC transporter with homology to the pleiotropic drug resistance (PDR) family of transporters, was cloned by primer walking from a P. sojae genomic library. Reverse transcriptase...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s00294-005-0015-4

    authors: Connolly MS,Sakihama Y,Phuntumart V,Jiang Y,Warren F,Mourant L,Morris PF

    更新日期:2005-12-01 00:00:00

  • Transcription of succinate dehydrogenase subunit 4 (sdh4) gene in potato: detection of extensive RNA editing and co-transcription with cytochrome oxidase subunit III (cox3) gene.

    abstract::The potato (Solanum tuberosum L.) mitochondrial cox3/ sdh4 gene cluster was previously identified by heterologous hybridization using a Marchantia polymorpha sdh4 probe. In this work, this potato gene cluster was cloned, sequenced and its expression was evaluated. The gene sequence and gene locus organization were fou...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s00294-002-0294-y

    authors: Siqueira SF,Dias SM,Hardouin P,Pereira FR,Lejeune B,de Souza AP

    更新日期:2002-07-01 00:00:00

  • Isolation of transcripts preferentially expressed during fruit body primordia differentiation in the basidiomycete Agrocybe aegerita.

    abstract::An Agrocybe aegerita cDNA library, constructed from fruit body primordia poly(A)+ RNAs, was screened by differential colony hybridization. Clones which preferentially hybridized to poly(A)+ RNA sequences from fruit body primordia, versus poly(A)+ RNAs from mycelium, were isolated. Eight of these clones (EMAa-1 to EMAa...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00326234

    authors: Salvado JC,Labarère J

    更新日期:1991-08-01 00:00:00

  • Nuclear genes control changes in the organization of the mitochondrial genome in tissue cultures derived from immature embryos of wheat.

    abstract::Although the mitochondrial genomes of the Chinese Spring and Aquila varieties of wheat are normally similar in organization, this is not so in tissue cultures initiated from their immature embryos where the mitochondrial genomes of both are rearranged and in different, characteristic, ways. However, the mitochondrial ...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00351662

    authors: Hartmann C,De Buyser J,Henry Y,Morère-Le Paven MC,Dyer TA,Rode A

    更新日期:1992-05-01 00:00:00

  • Comparison of ribosomal DNA ITS regions among geographic isolates of Cenococcum geophilum.

    abstract::Cenococcum geophilum is an ecologically important mycorrhizal fungus with a global distribution and a wide host range. It has been difficult to study since it forms only sterile mycelia and, occasionally, sclerotial bodies. Because of its lack of morphological variability, its taxonomy and phylogenetic origins have un...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s002940050449

    authors: Shinohara ML,LoBuglio KF,Rogers SO

    更新日期:1999-06-01 00:00:00

  • Import of tRNAs and aminoacyl-tRNA synthetases into mitochondria.

    abstract::During evolution, most of the bacterial genes from the ancestral endosymbiotic alpha-proteobacteria at the origin of mitochondria have been either lost or transferred to the nuclear genome. A crucial evolutionary step was the establishment of macromolecule import systems to allow the come back of proteins and RNAs int...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-008-0223-9

    authors: Duchêne AM,Pujol C,Maréchal-Drouard L

    更新日期:2009-02-01 00:00:00

  • Cloning and analysis of the nuclear gene MRP-S9 encoding mitochondrial ribosomal protein S9 of Saccharomyces cerevisiae.

    abstract::The Saccharomyces cerevisiae nuclear gene MRP-S9 was identified as part of the European effort in sequencing chromosome II. MRP-S9 encodes for a hydrophilic and basic protein of 278 amino acids with a molecular mass of 32 kDa. The C-terminal part (aa 153-278) of the MRP-S9 protein exhibits significant sequence similar...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00311878

    authors: Kötter P,Entian KD

    更新日期:1995-06-01 00:00:00

  • Optional elements in the chloroplast DNAs of chlamydomonas eugametos and C. moewusii: unidirectional gene conversion and co-conversion of adjacent markers in high-viability crossses.

    abstract::Unlike most polymorphic markers in the Chlamydomonas eugametos and Chlamydomonas moewusii chloroplast DNAs (cpDNAs), the C. moewusii 6- and 21-kb extra sequences and the C. eugametos-specific CeLSU small middle dot 5 intron are transmitted to all of the few viable progeny in reciprocal crosses between the two green al...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s002940050144

    authors: Bussières J,Lemieux C,Lee RW,Turmel M

    更新日期:1996-09-01 00:00:00

  • Nucleotide sequence of the ERG12 gene of Saccharomyces cerevisiae encoding mevalonate kinase.

    abstract::The nucleotide sequence of the ERG12 gene, encoding mevalonate kinase, from Saccharomyces cerevisiae is presented. The longest open reading frame may code for a protein containing 443 amino acids with a deduced relative molecular mass of 48,500. The analysis of the nucleotide sequence reveals a complete identity with ...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00362081

    authors: Oulmouden A,Karst F

    更新日期:1991-01-01 00:00:00

  • Biochemical and molecular characterization of a putative endoglucanase in Magnaporthe grisea.

    abstract::Microbial pathogens secrete an array of cell wall-degrading enzymes to break down the structure of the host cell wall to facilitate colonization of the host tissue. To better understand their role in the pathogenesis, a putative endoglucanase from Magnaporthe grisea was characterized in this paper. SignalP-3.0 analysi...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s00294-008-0179-9

    authors: Zhou J,Zheng XZ,Lan L,Lin CZ,Wu YB,Lin XJ,Ebbole D,Lu GD,Wang ZH

    更新日期:2008-04-01 00:00:00

  • Origin and direction of replication in mitochondrial plasmid DNAs of broad bean, Vicia faba.

    abstract::Broad bean (Vicia faba) mitochondrial DNA (mtDNA) includes three circular plasmids: mt-plasmid 1 (1,704 ntp), mt-plasmid 2 (1,695 ntp) and mt-plasmid 3 (1,476 ntp). Partially replicated circular forms of these mt-plasmids have been observed in electron microscope preparations. Restriction enzymes that cleave either mt...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00569340

    authors: Wahleithner JA,Wolstenholme DR

    更新日期:1988-08-01 00:00:00

  • Arenicin-1-induced apoptosis-like response requires RecA activation and hydrogen peroxide against Escherichia coli.

    abstract::Arenicin-1, a 21-mer antimicrobial peptide exerts significant broad-spectrum antimicrobial activity with membrane-active mechanisms. However, owing to multiple mechanisms of cell death, the antibacterial mechanism of arenicin-1 requires detailed analysis. In the present study, arenicin-1-treated bacteria underwent an ...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/s00294-018-0855-3

    authors: Lee H,Lee DG

    更新日期:2019-02-01 00:00:00

  • Inheritance and alteration of transforming DNA during an induced parasexual cycle in the imperfect fungus Cladosporium fulvum.

    abstract::Protoplasts of a pAN7-1-transformed isolate of Cladosporium fulvum race 4, harbouring a tandem duplication of the vector, and an untransformed race 5 isolate were fused, without selection for the presence of vector sequences. Fusion products were allowed to haploidize spontaneously. The inheritance of pAN7-1 sequences...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00312643

    authors: Arnau J,Oliver RP

    更新日期:1993-05-01 00:00:00

  • Epitope-tagging vectors designed for yeast.

    abstract::In order to facilitate the process of epitope-tagging of yeast proteins, we have constructed two Saccharomyces cerevisiae-Escherichia coli shuttle vectors that allow fusion of a sequence encoding an epitope of the human c-myc protein at the 3' end of any gene. An example of the use of this technique is presented. ...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00352019

    authors: Reisdorf P,Maarse AC,Daignan-Fornier B

    更新日期:1993-02-01 00:00:00

  • Insights into the cellular responses to hypoxia in filamentous fungi.

    abstract::Most eukaryotes require molecular oxygen for growth. In general, oxygen is the terminal electron acceptor of the respiratory chain and represents an important substrate for the biosynthesis of cellular compounds. However, in their natural environment, such as soil, and also during the infection, filamentous fungi are ...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-015-0487-9

    authors: Hillmann F,Shekhova E,Kniemeyer O

    更新日期:2015-08-01 00:00:00

  • Multiple interfaces control activity of the Candida glabrata Pdr1 transcription factor mediating azole drug resistance.

    abstract::The Cys6Zn2 DNA-binding domain transcription factor Pdr1 is a central regulator of drug resistance in the pathogenic yeast Candida glabrata. In this review, I discuss the multiple control mechanisms modulating the function of this positive transcriptional regulator. Available data suggest that Pdr1 activity is restrai...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-018-0870-4

    authors: Moye-Rowley WS

    更新日期:2019-02-01 00:00:00

  • Mutational analysis of a variant of ARS1 from Saccharomyces cerevisiae.

    abstract::A naturally occurring single base-pair G to A transition, creating a 10/11 near-match close to the essential 11 base-pair core consensus of ARS1, was used to investigate the importance of near-match sequences. The 10/11 near-match can not substitute for the core consensus since an ARS- phenotype is observed when the c...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00351723

    authors: Kirpekar F,Gulløv K

    更新日期:1992-09-01 00:00:00

  • The interplay of histone H2B ubiquitination with budding and fission yeast heterochromatin.

    abstract::Mono-ubiquitinated histone H2B (H2B-Ub) is important for chromatin regulation of transcription, chromatin assembly, and also influences heterochromatin. In this review, we discuss the effects of H2B-Ub from nucleosome to higher-order chromatin structure. We then assess what is currently known of the role of H2B-Ub in ...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-018-0812-1

    authors: Zukowski A,Johnson AM

    更新日期:2018-08-01 00:00:00

  • New sequencing methodologies reveal interplay between multiple RNA-binding proteins and their RNAs.

    abstract::It is now established that base-pairing regulatory RNAs are key players in post-transcriptional regulatory networks where they affect the translation and/or stability of their target RNAs. In many cases, the base-pairing between two RNAs is facilitated by an RNA-binding protein (RBP) that serves as an RNA chaperone. R...

    journal_title:Current genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00294-020-01066-y

    authors: Melamed S

    更新日期:2020-08-01 00:00:00

  • Sequences of three dsRNAs associated with La France disease of the cultivated mushroom (Agaricus bisporus).

    abstract::La France disease of the cultivated mushroom, Agaricus bisporus, is known to be associated with the presence of a number of dsRNA segments. The nucleotide sequences of the dsRNAs M2 (1.3 kb), M1 (1.55 kb) and L3 (2.8 kb), invariably associated with the disease, were determined. Putative coding sequences for proteins w...

    journal_title:Current genetics

    pub_type: 杂志文章

    doi:10.1007/BF00312776

    authors: Harmsen MC,Tolner B,Kram A,Go SJ,de Haan A,Wessels JG

    更新日期:1991-07-01 00:00:00