Backbone folding of the polypeptide cardiac stimulant anthopleurin-A determined by nuclear magnetic resonance, distance geometry and molecular dynamics.

Abstract:

:The solution conformation of the cardiac stimulatory sea anemone polypeptide anthopleurin-A has been characterised using distance geometry and restrained molecular dynamics calculations. A set of 253 approximate interproton distance restraints and 14 peptide backbone torsion angle restraints derived from two-dimensional 1H-NMR spectra at 500 MHz were used as input for these calculations. 13 structures generated by either metric matrix or variable target function distance geometry calculations were refined using energy minimisation and restrained molecular dynamics. The resulting structures contain a region of twisted antiparellel beta-sheet to which two separate regions of unordered chain are linked by three disulphide bonds. Two loops, one including Pro-41 and the other encompassing residues 10-18, are poorly defined by the NOE data.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Torda AE,Mabbutt BC,van Gunsteren WF,Norton RS

doi

10.1016/0014-5793(88)80931-1

subject

Has Abstract

pub_date

1988-11-07 00:00:00

pages

266-70

issue

2

eissn

0014-5793

issn

1873-3468

pii

0014-5793(88)80931-1

journal_volume

239

pub_type

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