Assessing circovirus gene flow in multiple spill-over events.

Abstract:

:The establishment of viral pathogens in new host environments following spillover events probably requires adaptive changes within both the new host and pathogen. After many generations, signals for ancient cross-species transmission may become lost and a strictly host-adapted phylogeny may mimic true co-divergence while the virus may retain an inherent ability to jump host species. The mechanistic basis for such processes remains poorly understood. To study the dynamics of virus-host co-divergence and the arbitrary chances of spillover in various reservoir hosts with equal ecological opportunity, we examined structural constraints of capsid protein in extant populations of Beak and feather disease virus (BFDV) during known spillover events. By assessing reservoir-based genotype stratification, we identified co-divergence defying signatures in the evolution BFDV which highlighted primordial processes of cryptic host adaptation and competing forces of host co-divergence and cross-species transmission. We demonstrate that, despite extensive surface plasticity gathered over a longer span of evolution, structural constraints of the capsid protein allow opportunistic host switching in host-adapted populations. This study provides new insights into how small populations of endangered psittacine species may face multidirectional forces of infection from reservoirs with apparently co-diverging genotypes.

journal_name

Virus Genes

journal_title

Virus genes

authors

Das S,Smith K,Sarker S,Peters A,Adriaanse K,Eden P,Ghorashi SA,Forwood JK,Raidal SR

doi

10.1007/s11262-019-01702-x

subject

Has Abstract

pub_date

2019-12-01 00:00:00

pages

802-814

issue

6

eissn

0920-8569

issn

1572-994X

pii

10.1007/s11262-019-01702-x

journal_volume

55

pub_type

杂志文章
  • Transcriptional profiling of Marek's disease virus genes during cytolytic and latent infection.

    abstract::Marek's disease (MD), a lymphoproliferative disease of chicken is caused by a highly cell-associated alpha-herpesvirus, Marek's disease virus (MDV). MDV replicates in chicken lymphocytes and establishes a latent infection within CD4(+) T cells. The expression analysis of limited viral transcripts have revealed differe...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0203-7

    authors: Heidari M,Huebner M,Kireev D,Silva RF

    更新日期:2008-04-01 00:00:00

  • Analysis of the molecular variability of Grapevine leafroll-associated virus 1 reveals the presence of two distinct virus groups and their mixed occurrence in grapevines.

    abstract::Genetic diversity of eight Grapevine leafroll-associated virus 1 (GLRaV-1) isolates recovered from grapevines in three distinct locations in the Czech Republic and Slovakia was characterised by restriction fragment length polymorphism (RFLP) analysis and by sequencing of cloned 540 bp fragment of the heat shock protei...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-005-3236-1

    authors: Komínek P,Glasa M,Bryxiová M

    更新日期:2005-12-01 00:00:00

  • Inhibiting replication of begomoviruses using artificial zinc finger nucleases that target viral-conserved nucleotide motif.

    abstract::Geminiviridae consists of a large group of single-stranded DNA viruses that cause tremendous losses worldwide. Frequent mixed infection and high rates of recombination and mutation allow them to adapt rapidly to new hosts and overcome hosts' resistances. Therefore, an effective strategy able to confer plants with resi...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1041-4

    authors: Chen W,Qian Y,Wu X,Sun Y,Wu X,Cheng X

    更新日期:2014-06-01 00:00:00

  • Sequence analysis of porcine adenovirus serotype 5 fibre gene: evidence for recombination.

    abstract::The nucleic acid and deduced amino acid sequence of the fibre gene of the HNF-61 strain of porcine adenovirus serotype 5 (PAdV-5) was determined and compared to that of the HNF-70 strain of the same serotype (Nagy et al., J Gen Virol 82, 525-529, 2001) and also to adenovirus fibre genes from the genera Mastadenovirus ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1014580802250

    authors: Nagy M,Nagy E,Tuboly T

    更新日期:2002-03-01 00:00:00

  • Identification of a new Bombyx mori nucleopolyhedrovirus and analysis of its bro gene family.

    abstract::The highly pathogenic Bombyx mori nucleopolyhedrovirus (BmNPV) has caused severe damages to sericulture in many countries, and the relationship between the pathogenicity of various BmNPV strains and their geographical evolution has been the topic of our interest. In this study, we isolated a new BmNPV strain from Thai...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-012-0721-1

    authors: Zhou JB,Li XQ,De-Eknamkul W,Suraporn S,Xu JP

    更新日期:2012-06-01 00:00:00

  • Complete genomic characterization of a porcine reproductive and respiratory syndrome virus isolate in Xinjiang province of China.

    abstract::Porcine reproductive and respiratory syndrome (PRRS) is a swine disease of major economic importance that causes reproductive and respiratory problems in pigs. In the present study, one strain of porcine reproductive and respiratory syndrome virus (PRRSV) was isolated in Xinjiang province, Northwest China, designated ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1122-4

    authors: Xia J,Chen S,Huang J,Ma W,Du W,Yang X,Liu Y,Yan G

    更新日期:2015-02-01 00:00:00

  • Heptad-repeat sequences in the glycoprotein of rhabdoviruses.

    abstract::Two or three regions containing three or more successive newly defined heptads of a-d hydrophobic amino acid repeats have been located in the cDNA-derived amino acid sequences of glycoprotein G of all rhabdoviruses examined (rabies, vesicular stomatitis, fish, and plant rhabdoviruses) by computer search. These new hep...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01702591

    authors: Coll JM

    更新日期:1995-01-01 00:00:00

  • Emerging viruses in the genus Comovirus.

    abstract::The intraspecies variability of capsid proteins of five viruses of the genus Comovirus was established. Inclusion of both capsid proteins to the sequence analysis reduces some uncertainties about species/strains demarcation criteria in the Comovirus genus. New approach is proposed for discrimination of Turnip ringspot...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0443-1

    authors: Petrzik K,Koloniuk I

    更新日期:2010-04-01 00:00:00

  • Comparison of Schmallenberg virus sequences isolated from mammal host and arthropod vector.

    abstract::Schmallenberg virus (SBV) is the member of Peribunyaviridae family, which comprises pathogens of importance for human and veterinary medicine. The virus is transmitted only between animals and mainly by biting midges of the genus Culicoides. This study was performed in order to determine SBV genetic diversity and eluc...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-018-1607-7

    authors: Kęsik-Maliszewska J,Antos A,Rola J,Larska M

    更新日期:2018-12-01 00:00:00

  • Genetic mechanisms of antigenic variation in infectious bursal disease virus: analysis of a naturally occurring variant virus.

    abstract::The major immunogenic protein VP2 from a pathogenic field isolate (variant A virus) of infectious bursal disease virus (IBDV) was cloned and sequenced to examine antigenic variations. The VP2 open reading frame consists of 1509 nucleotides and codes for a 503 amino acid protein. Overall, the VP2 amino acid sequence of...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01702563

    authors: Lana DP,Beisel CE,Silva RF

    更新日期:1992-08-01 00:00:00

  • Genetic characterization of bovine coronavirus in Vietnam.

    abstract::A maximum clade credibility tree constructed using the full-length spike (S) and hemagglutinin-esterase genes revealed that Vietnamese Bovine coronavirus (BCoV) strains belong to a single cluster (C1); therefore, they might share a common origin with Cuban and Chinese BCoV strains. The omega values of cluster 1 (C1) a...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-019-01647-1

    authors: Shin J,Tark D,Le VP,Choe S,Cha RM,Park GN,Cho IS,Nga BTT,Lan NT,An DJ

    更新日期:2019-06-01 00:00:00

  • Genomic analysis of an effective lentiviral vaccine-attenuated equine infectious anemia virus vaccine EIAV FDDV13.

    abstract::Chinese equine infectious anemia virus (EIAV) attenuated vaccine is the first lentiviral vaccine with a successful application. In order to understand the correlation of viral genomic mutations with viral attenuation and with induced immunoprotective properties, we analyzed the proviral genome sequences of the EIAV-at...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-010-0491-6

    authors: Qi X,Wang X,Wang S,Lin Y,Jiang C,Ma J,Zhao L,Lv X,Shen R,Wang F,Kong X,Su Z,Zhou J

    更新日期:2010-08-01 00:00:00

  • The VP3 gene of human group C rotavirus.

    abstract::The complete nucleotide sequence of genome segment 4 from the human group C rotavirus (Bristol strain) was determined. Comparison of the nucleotide sequences of the genome termini with the consensus 5' and 3' terminal non-coding sequences of the human group C rotavirus genome revealed characteristic 5' and 3' sequence...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00568909

    authors: Samarbaf-Zadeh AR,Lambden PR,Green SM,Deng Y,Caul EO,Clarke IN

    更新日期:1996-01-01 00:00:00

  • Detection, differentiation and phylogenetic analysis of cucumber mosaic virus isolates from cucurbits in the northwest region of Iran.

    abstract::One hundred and twenty three cucurbit samples with one or more symptoms of leaf mosaic, leaf distortion, fruit mosaic, stunting, mottling and yellowing were collected from several locations in the northwest region of Iran. Screening by double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) with a cucum...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-005-6912-2

    authors: Bashir NS,Kalhor MR,Zarghani SN

    更新日期:2006-06-01 00:00:00

  • Predicted stem-loop structures and variation in nucleotide sequence of 3' noncoding regions among animal calicivirus genomes.

    abstract::Caliciviruses are nonenveloped with a polyadenylated genome of approximately 7.6 kb and a single capsid protein. The "RNA Fold" computer program was used to analyze 3'-terminal noncoding sequences of five feline calicivirus (FCV), rabbit hemorrhagic disease virus (RHDV), and two San Miguel sea lion virus (SMSV) isolat...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01704518

    authors: Seal BS,Neill JD,Ridpath JF

    更新日期:1994-07-01 00:00:00

  • Complete genomic sequence and phylogenetic relatedness of hepatitis B virus isolates in Cambodia.

    abstract::Although it is known that Cambodia is one of the high endemic area of hepatitis B virus (HBV) infection, molecular characterization of HBV circulating in this country has not been reported. In this study, pre-S gene of HBV from 12 Cambodian patients was sequenced. Phylogenetic analysis based on the pre-S gene sequence...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0205-5

    authors: Huy TT,Sall AA,Reynes JM,Abe K

    更新日期:2008-04-01 00:00:00

  • Molecular characterization of KGH, the first human isolate of rabies virus in Korea.

    abstract::The complete genome sequence of the KGH strain of the first human rabies virus, which was isolated from a skin biopsy of a patient with rabies, whose symptoms developed due to bites from a raccoon dog in 2001. The size of the KGH strain genome was determined to be 11,928 nucleotides (nt) with a leader sequence of 58 n...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-012-0850-6

    authors: Park JS,Kim CK,Kim SY,Ju YR

    更新日期:2013-04-01 00:00:00

  • Phylogenetic analysis of partial RNA-polymerase blocks II and III of Rabies virus isolated from the main rabies reservoirs in Brazil.

    abstract::This study describes the results of the sequencing and analysis of segments of Blocks II and III of the RNA polymerase L gene of Rabies virus isolates from different reservoir species of Brazil. The phylogenetic relations of the virus were determined and a variety of species-specific nucleotides were found in the anal...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-012-0743-8

    authors: Carnieli P Jr,de Novaes Oliveira R,de Oliveira Fahl W,de Carvalho Ruthner Batista HB,Scheffer KC,Iamamoto K,Castilho JG

    更新日期:2012-08-01 00:00:00

  • Complete genome sequence of a sapovirus from a child in Zhejiang, China.

    abstract::Although Sapovirus (Caliciviridae) has been accepted as one of the causes of acute gastroenteritis worldwide, little is known about the genetic characteristics of the whole genome of sapoviruses in China, especially those that infect humans. Here we report the complete genome sequence of a sapovirus strain, Human/Zhej...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1343-9

    authors: Zhou X,Sun Y,Shang X,Gao J,Zhao X,Shuai H,Zhang R,Zhang Y

    更新日期:2016-10-01 00:00:00

  • Phylodynamic analysis of two amino acid substitutions in the hemagglutinin protein of canine distemper virus strains detected in fur-bearing animals in China.

    abstract::Canine distemper virus (CDV) causes a highly contagious disease in a wide range of carnivores. The hemagglutinin (H) protein of viruses shows the highest variability and plays an important role in modulation of viral antigenicity, virulence, and receptor recognition. Since 2012, canine distemper (CD) outbreaks in fur-...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-019-01720-9

    authors: Tao R,Ba H,Chen J,Liu M,Pan H,Li X,Wang Q,Zhao J

    更新日期:2020-02-01 00:00:00

  • First complete genome sequences of genogroup V, genotype 3 porcine sapoviruses: common 5'-terminal genomic feature of sapoviruses.

    abstract::Sapoviruses (SaVs) are enteric viruses and have been detected in various mammals. They are divided into multiple genogroups and genotypes based on the entire major capsid protein (VP1) encoding region sequences. In this study, we determined the first complete genome sequences of two genogroup V, genotype 3 (GV.3) SaV ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-017-1481-8

    authors: Oka T,Doan YH,Shimoike T,Haga K,Takizawa T

    更新日期:2017-12-01 00:00:00

  • Barriers to systemic application of virus-based vectors in gene therapy: lessons from adenovirus type 5.

    abstract::Currently, virus-based vectors, namely derivatives of the adenovirus, are frequently used in a wide variety of ex vivo or local gene therapeutic applications. However, the efficacy of virus-based vectors in systemic applications is presently still extremely limited. Complex interactions of the various vector types wit...

    journal_title:Virus genes

    pub_type: 杂志文章,评审

    doi:10.1007/s11262-017-1498-z

    authors: Jönsson F,Kreppel F

    更新日期:2017-10-01 00:00:00

  • Arenavirus phylogeny: a new insight.

    abstract::Arenaviridae is a worldwide distributed family, of enveloped, single stranded, RNA viruses. The arenaviruses were divided in two major groups (Old World and New World), based on serological properties and genetic data, as well as the geographic distribution. In this study the phylogenetic relationship among the member...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1007993525052

    authors: Albariño CG,Posik DM,Ghiringhelli PD,Lozano ME,Romanowski V

    更新日期:1998-01-01 00:00:00

  • Nucleotide sequence of the nucleoprotein gene of the RC.HL strain of rabies virus, a seed strain used for animal vaccine production in Japan.

    abstract::By using a phage vector (lambda ZAP II) and the mRNA extracted from IMR-32 cells infected with the RC.HL strain of rabies virus, we constructed a cDNA library from which four nucleoprotein (N)-specific cDNA clones were obtained by Southern blot hybridization. These clones contained a cDNA insert of about 1.4 kb, in wh...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01703607

    authors: Goto H,Minamoto N,Ito H,Sugiyama M,Kinjo T,Mannen K,Mifune K,Kawai A

    更新日期:1994-03-01 00:00:00

  • Detection and differentiation of Japanese encephalitis virus genotype I and genotype III by reverse transcription loop-mediated isothermal amplification combined with restriction fragment length polymorphism.

    abstract::Japanese encephalitis (JE), which is a mosquito-borne arboviral infection, is the leading cause of viral encephalitis in Asian countries. The causative agent of JE is Japanese encephalitis virus (JEV), in which the predominant genotype has changed from genotype III (G III) to genotype I (G I). However, a method for th...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1158-5

    authors: Zhang L,Cao S,Wu R,Zhu S,Liu H,Yuan L,Shi S,Zhang D,Huang X,Wen X,Wen Y,Yan Q,Huang Y,Ma X

    更新日期:2015-04-01 00:00:00

  • A new clade of hepatitis B virus subgenotype F1 from Peru with unusual properties.

    abstract::There are eight genotypes A-H of hepatitis B virus (HBV). Most genotypes are further divided into subgenotypes. Genotypes and subgenotypes influence the natural course of infection and therapy. We analysed nine sera from HBV carriers from Peru. Using the small hepatitis B surface protein HBs, all samples could be grou...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0261-x

    authors: von Meltzer M,Vásquez S,Sun J,Wendt UC,May A,Gerlich WH,Radtke M,Schaefer S

    更新日期:2008-10-01 00:00:00

  • Watermelon chlorotic stunt virus (WmCSV): a serious disease threatening watermelon production in Jordan.

    abstract::The incidence of watermelon chlorotic stunt disease and the molecular characterization of the Jordanian isolate of Watermelon chlorotic stunt virus (WmCSV-[JO]) are described in this study. Symptomatic leaf samples obtained from watermelon (Citrullus lanatus Thunb.), melon (Cucumis melo L.), squash (Cucurbita pepo), c...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0594-8

    authors: Al-Musa A,Anfoka G,Al-Abdulat A,Misbeh S,Haj Ahmed F,Otri I

    更新日期:2011-08-01 00:00:00

  • Characterisation of a satellite RNA of Cucumber mosaic virus that induces chlorosis in Capsicum annuum.

    abstract::The presence of Cucumber mosaic virus (CMV) satellite RNA dramatically changes symptoms on some hosts. A satellite RNA present in a strain of CMV (PepY-CMV) that induced chlorosis in pepper (Capsicum annuum) was shown to induce chlorosis in pepper in combination with another strain (Fny-CMV) that by itself induced a g...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0608-6

    authors: Choi SK,Jeon YW,Yoon JY,Choi JK

    更新日期:2011-08-01 00:00:00

  • Mal de Río Cuarto virus (MRCV) genomic segment S3 codes for the major core capsid protein.

    abstract::Mal de Río Cuarto virus (MRCV) is a newly described species of the genus Fijivirus, family Reoviridae. Compared with other plant-infecting genus of the family, the function and localization of MRCV and other Fijivirus proteins are poorly understood. Through analysis of viral particle purifications, we positively ident...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0345-2

    authors: Distéfano AJ,Maldonado S,Hopp HE,del Vas M

    更新日期:2009-06-01 00:00:00

  • Transcriptional suppression of IE180 and TK promoters by the EP0 of pseudorabies virus strains Ea and Fa.

    abstract::In our transient expression assays, the IE180 and TK promoters were markedly suppressed by the EP0 of the pseudorabies virus strains Ea and Fa (EP0/Ea, EP0/Fa). This is in contrast with the transactivating activity of EP0 from strain YS-81 (EP0/YS-81) in previous studies. Amino acid sequence alignment revealed several...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0320-3

    authors: Guo H,Zhou R,Xi Y,Xiao S,Chen H

    更新日期:2009-04-01 00:00:00