Predicted stem-loop structures and variation in nucleotide sequence of 3' noncoding regions among animal calicivirus genomes.

abstract：:Several important biological processes are performed by distinct functional domains found on replication-associated protein (Rep) encoded by AC1 of geminiviruses. Two truncated forms of replicase (tAC1) gene, capable of expressing only the N-terminal 669 bp (5'AC1) and C-terminal 783 bp (3'AC1) nucleotides cloned unde...

journal_title：Virus genes

authors： Hashmi JA,Zafar Y,Arshad M,Mansoor S,Asad S

更新日期：2011-04-01 00:00:00

abstract：:DNA viruses as their host cells require a DNA-dependent DNA polymerase (Pol) to faithfully replicate their genomic information. Large eukaryotic DNA viruses as well as bacterial viruses encode a specific Pol equipped with a proofreading 3'-5'-exonuclease, and other replication proteins. All known viral Pol belong to f...

journal_title：Virus genes

authors： Knopf CW

更新日期：1998-01-01 00:00:00

abstract：:In this study, the relative synonymous codon usage (RSCU) values, effective number of codon (ENC) values, nucleotide contents, and dinucleotide were used to investigate codon usage pattern of each protein-coding gene and genome among 31 Newcastle disease virus (NDV) isolates. The result shows that the overall extent o...

journal_title：Virus genes

authors： Wang M,Liu YS,Zhou JH,Chen HT,Ma LN,Ding YZ,Liu WQ,Gu YX,Zhang J

更新日期：2011-04-01 00:00:00

abstract：:Astroviruses (AstV) are associated with enteric and systemic disease in mammals and birds. Astroviruses have received increased attention recently as they have been found to be associated with sporadic neurologic disease in mammals including humans. In pigs, porcine astrovirus (PoAstV) can be widely detected and has b...

journal_title：Virus genes

authors： Lv SL,Zhang HH,Li JY,Hu WQ,Song YT,Opriessnig T,Xiao CT

更新日期：2019-10-01 00:00:00

abstract：:Torque teno viruses (TTVs) are classified into the Anellovirus genus of the Circoviridae family. In addition to TTV isolates, TTV genogroup 3 also includes the 8 virus strains known as SENV-A to H. In this study, the prevalence of TTV group 3 viruses and that of SENV-D and H in particular were determined among the sta...

journal_title：Virus genes

authors： Dencs A,Hettmann A,Szomor KN,Kis Z,Takács M

更新日期：2009-08-01 00:00:00

abstract：:There are eight genotypes A-H of hepatitis B virus (HBV). Most genotypes are further divided into subgenotypes. Genotypes and subgenotypes influence the natural course of infection and therapy. We analysed nine sera from HBV carriers from Peru. Using the small hepatitis B surface protein HBs, all samples could be grou...

journal_title：Virus genes

authors： von Meltzer M,Vásquez S,Sun J,Wendt UC,May A,Gerlich WH,Radtke M,Schaefer S

更新日期：2008-10-01 00:00:00

abstract：:Sacbrood virus (SBV) represents a serious threat to the health of managed honeybees. We determined four complete SBV genomic sequences (AmSBV-Kor1, AmSBV-Kor2, AcSBV-Kor3, and AcSBV-Kor4) isolated from Apis mellifera and Apis cerana in various regions of South Korea. A phylogenetic tree was constructed from the comple...

journal_title：Virus genes

authors： Reddy KE,Yoo MS,Kim YH,Kim NH,Ramya M,Jung HN,Thao le TB,Lee HS,Kang SW

更新日期：2016-04-01 00:00:00

abstract：:To determine the prevalence of TT virus (TTV) and GB virus C/hepatitis G virus (GBV-C) infections among patients with liver disease and the general population in Shanghai, China, we studied 90 patients with liver diseases (acute hepatitis, 28; chronic hepatitis, 27; liver cirrhosis, 20; hepatocellular carcinoma, 15) a...

journal_title：Virus genes

authors： Ding X,Mizokami M,Kang LY,Cao K,Orito E,Tanaka Y,Ueda R,Sasaki M

更新日期：1999-01-01 00:00:00

abstract：:The original version of this article unfortunately contained errors in the "Results" section. ...

journal_title：Virus genes

authors： Guadie D,Tesfaye K,Knierim D,Winter S,Abraham A

更新日期：2019-06-01 00:00:00

abstract：:Porcine stool-associated RNA virus 1 (Posavirus 1) is a novel member of picornaviruses and first identified from fecal samples of 30-day-old pigs with diarrhea in USA in 2011. To evaluate the existence of Posavirus 1 in swine herds, 118 clinical samples from diarrheal pigs and 31 fecal swabs from healthy pigs were col...

journal_title：Virus genes

authors： Chen J,Lu M,Ma T,Cao L,Zhu X,Zhang X,Shi D,Shi H,Liu J,Feng L

更新日期：2018-02-01 00:00:00

abstract：:H1 influenza A viruses that were distinct from the classical swine H1 lineage were identified in pigs in Canada in 2003–2004; antigenic and genetic characterization identified the hemagglutinin (HA) as human H1 lineage. The viruses identified in Canadian pigs were human lineage in entirety or double (human–swine) reas...

journal_title：Virus genes

authors： Vincent AL,Ma W,Lager KM,Gramer MR,Richt JA,Janke BH

更新日期：2009-10-01 00:00:00

abstract：:Genetic diversity of eight Grapevine leafroll-associated virus 1 (GLRaV-1) isolates recovered from grapevines in three distinct locations in the Czech Republic and Slovakia was characterised by restriction fragment length polymorphism (RFLP) analysis and by sequencing of cloned 540 bp fragment of the heat shock protei...

journal_title：Virus genes

authors： Komínek P,Glasa M,Bryxiová M

更新日期：2005-12-01 00:00:00

abstract：:Avian reovirus infection causes considerable economic loss to the commercial poultry industry. Live-attenuated vaccine strain S1133 (v-S1133, derived from parent strain S1133) is considered the safest and most effective vaccine and is currently used worldwide. To identify the genes responsible for its attenuation, DNA...

journal_title：Virus genes

authors： Teng L,Xie Z,Xie L,Liu J,Pang Y,Deng X,Xie Z,Fan Q,Luo S,Feng J,Khan MI

更新日期：2014-04-01 00:00:00

abstract：:We previously identified a large homologous region (hr), hycu-hr6, in the genome of the Hyphantria cunea nucleopolyhedrovirus (HycuNPV) and suggested that hycu-hr6 was the largest baculovirus promoter enhancer hr identified so far. In this study, we examined the enhancement activity of hycu-hr6 against two promoters f...

journal_title：Virus genes

authors： Felipe Alves CA,Ishikawa H,Ikeda M,Kobayashi M

更新日期：2009-12-01 00:00:00

abstract：:The Agrotis ipsilon multiple nucleopolyhedrovirus (AgipMNPV) is a group II nucleopolyhedrovirus (NPV) from the black cutworm, A. ipsilon, with potential as a biopesticide to control infestations of cutworm larvae. The genome of the Illinois strain of AgipMNPV was completely sequenced. The AgipMNPV genome was 155,122 n...

journal_title：Virus genes

authors： Harrison RL

更新日期：2009-02-01 00:00:00

abstract：:Bornaviruses (family Bornaviridae) are non-segmented negative-strand RNA viruses. Avian bornaviruses (ABVs), which are causative agents of proventricular dilatation disease, are a genetically diverse group with at least 15 genotypes, including parrot bornaviruses (PaBVs) and aquatic bird bornavirus 1(ABBV-1). Borna di...

journal_title：Virus genes

authors： Sassa Y,Bui VN,Saitoh K,Watanabe Y,Koyama S,Endoh D,Horie M,Tomonaga K,Furuya T,Nagai M,Omatsu T,Imai K,Ogawa H,Mizutani T

更新日期：2015-10-01 00:00:00

abstract：:The presence of Cucumber mosaic virus (CMV) satellite RNA dramatically changes symptoms on some hosts. A satellite RNA present in a strain of CMV (PepY-CMV) that induced chlorosis in pepper (Capsicum annuum) was shown to induce chlorosis in pepper in combination with another strain (Fny-CMV) that by itself induced a g...

journal_title：Virus genes

authors： Choi SK,Jeon YW,Yoon JY,Choi JK

更新日期：2011-08-01 00:00:00

abstract：:Cytotoxic T cells that recognize dengue fever viral (DFV) peptides were reported. To predict the cleavage pattern of DFV proteins by cytoplasmic proteasomes into nonapeptides with motifs fitting known HLA class I molecules, the computer program "Findpatterns" was used. In this study the combined amino acid motifs for ...

journal_title：Virus genes

authors： Becker Y

更新日期：1995-01-01 00:00:00

abstract：:Cap-independent translations of viral RNAs of enteroviruses and rhinoviruses, cardioviruses and aphthoviruses, hepatitis A and C viruses (HAV and HCV), and pestivirus are initiated by the direct binding of 40S ribosomal subunits to a cis-acting genetic element termed the internal ribosome entry site (IRES) or ribosome...

journal_title：Virus genes

authors： Le SY,Siddiqui A,Maizel JV Jr

更新日期：1996-01-01 00:00:00

abstract：:We have determined the complete capsid gene sequence of 20 Norwalk-like viruses (NLVs) collected predominantly from outbreaks in the UK between 1989 and 1996. These comprised nine genogroup I and eleven genogroup II strains. Phylogenetic analysis of these and 15 published sequences suggest seven genomic sub-groups wit...

journal_title：Virus genes

authors： Green J,Vinje J,Gallimore CI,Koopmans M,Hale A,Brown DW,Clegg JC,Chamberlain J

更新日期：2000-01-01 00:00:00

abstract：:Bats are carriers of potentially zoonotic viruses, therefore it is crucial to identify viruses currently found in bats to better understand how they are maintained in bat populations and evaluate risks for transmission to other species. Adenoviruses have been previously detected in bats throughout the world, but sampl...

journal_title：Virus genes

authors： Lee DN,Angiel M

更新日期：2020-02-01 00:00:00

abstract：:Two restriction fragments of bovine papillomavirus type 5 (BPV5), of a genomic size of 1.6 and 1.2 kb were subcloned and sequenced. One of them seemed to correspond to the 3' end of the E1 open reading frame (ORF) and the other to the region of the E7, E8 and 5' end of the E1 ORF. Alignments of these fragments with ot...

journal_title：Virus genes

authors： Bloch N,Breen M

更新日期：1997-01-01 00:00:00

abstract：:The emerging occurrence of antibiotic-resistant bacterial pathogens leads to a recollection of bacteriophage as antimicrobial therapeutics. This article presents a short overview of the clinical phage application including their use in military medicine and discusses the genotypic and phenotypic properties of a potent...

journal_title：Virus genes

authors： Reuter M,Kruger DH

更新日期：2020-04-01 00:00:00

abstract：:The Chinese equine infectious anemia virus (EIAV) virulent strain EIAV(LN40) is derived from a naturally occurring virus by continuously passing in horses for 16 generations. Its genome sequence is 23% different from that of the American strains or the Japanese strains, and the variation of envelope gp90 surface unit ...

journal_title：Virus genes

authors： Wang X,Wang S,Lin Y,Jiang C,Ma J,Zhao L,Lv X,Wang F,Shen R,Zhou J

更新日期：2011-04-01 00:00:00

abstract：:Rabies is an important public health problem in South East Asia, with cases in this part of the world contributing to about 70% of the global burden. A large number of rabies cases occur in India, however, there is no organized system of surveillance and hence there is a lack of reliable data. Moreover, comprehensive ...

journal_title：Virus genes

authors： Nagaraja T,Madhusudana S,Desai A

更新日期：2008-06-01 00:00:00

abstract：:Duck hepatitis A virus type 1, (DHAV-1) 2A2pro, is one of the most highly conserved viral proteins within the DHAV serotypes. However, its effect on host cells is unclear. We predicted that DHAV-1 2A2pro was a GTPase-like protein based on the results of multiple sequence alignment and homologous modeling analysis. Upo...

journal_title：Virus genes

authors： Cao J,Ou X,Zhu D,Ma G,Cheng A,Wang M,Chen S,Jia R,Liu M,Sun K,Yang Q,Wu Y,Chen X

更新日期：2016-12-01 00:00:00

abstract：:Gallid herpesvirus-1 (GaHV-1), commonly named infectious laryngotracheitis (ILT) virus, causes the respiratory disease in chickens known as ILT. The molecular determinants associated with differences in pathogenicity of GaHV-1 strains are not completely understood, and a comparison of genomic sequences of isolates tha...

journal_title：Virus genes

authors： Spatz SJ,Volkening JD,Keeler CL,Kutish GF,Riblet SM,Boettger CM,Clark KF,Zsak L,Afonso CL,Mundt ES,Rock DL,Garcia M

更新日期：2012-04-01 00:00:00

abstract：:The S2 glycoprotein and membrane (M) protein genes and S1 glycoprotein and nucleocapsid (N) genes of 11 Korean infectious bronchitis virus (IBV) isolates were amplified by RT-PCR, cloned, and sequenced. The resultant nucleotide sequences were compared with the published sequences for non-Korean IBV strains. Korean IBV...

journal_title：Virus genes

authors： Song JE,Jeong WG,Sung HW,Kwon HM

更新日期：2013-04-01 00:00:00

abstract：:This study focuses on gene expression of porcine circovirus (PCV) in order to identify viral genes and their corresponding mRNA transcripts. By northern blot analysis, the existence of three mRNAs could be demonstrated. Two mRNAs are encoded by the viral (-)-strand and one is encoded by the viral (+)-strand. The (+)-s...

journal_title：Virus genes

authors： Mankertz J,Buhk HJ,Blaess G,Mankertz A

更新日期：1998-01-01 00:00:00

abstract：:A BK virus isolate cloned from the urine of an immunosuppressed patient was identified as the WW strain. Fine mapping using four base-pair restriction enzymes identified a number of small deletions and insertions relative to prototype BK. The finding of a transcriptional control region with a structure similar to that...

journal_title：Virus genes

authors： Rubinstein R,Harley EH

更新日期：1989-03-01 00:00:00