Small RNA-based interactions between rice and the viruses which cause the tungro disease.

Abstract:

:Rice tungro disease is caused by a complex of two viruses, Rice tungro bacilliform virus (RTBV) and Rice tungro spherical virus (RTSV). To examine the RNAi-based defence response in rice during tungro disease, we characterized the virus-derived small RNAs and miRNAs by Deep Sequencing. We found that, while 21 nt/22 nt (nucleotide) siRNAs are predominantly produced in a continuous, overlapping and asymmetrical manner from RTBV, siRNA accumulation from RTSV were negligible. Additionally, 54 previously known miRNAs from rice, predicted to be regulating genes involved in plant defence, hormone signaling and developmental pathways were differentially expressed in the infected samples, compared to the healthy ones. This is the first study of sRNA profile of tungro virus complex from infected rice plants. The biased response of the host antiviral machinery against the two viruses and the differentially-expressed miRNAs are novel observations, which entail further studies.

journal_name

Virology

journal_title

Virology

authors

Zarreen F,Kumar G,Johnson AMA,Dasgupta I

doi

10.1016/j.virol.2018.07.022

subject

Has Abstract

pub_date

2018-10-01 00:00:00

pages

64-73

eissn

0042-6822

issn

1096-0341

pii

S0042-6822(18)30224-1

journal_volume

523

pub_type

杂志文章

相关文献

VIROLOGY文献大全
  • The nucleotide sequence of apple stem grooving capillovirus genome.

    abstract::The complete nucleotide sequence of apple stem grooving virus (ASGV) genome has been determined. The genome is 6496 nucleotides in length excluding a 3'-terminal poly(A) tail and contains two overlapping open reading frames (ORFs). ORF1 begins at nucleotide position 37 and is terminated at position 6341, encoding a pr...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90170-t

    authors: Yoshikawa N,Sasaki E,Kato M,Takahashi T

    更新日期:1992-11-01 00:00:00

  • Complementation of deletion of the vaccinia virus E3L gene by the Escherichia coli RNase III gene.

    abstract::This work investigated whether the Escherichia coli RNase III gene, rnc+, could complement vp1080, a mutant vaccinia virus that is deleted of its E3L gene. Like E3L, rnc+ codes for a dsRNA binding protein that contains an additional nucleolytic activity. Rnc genes were cloned into the eukaryotic expression vector pMTV...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.8319

    authors: Shors T,Jacobs BL

    更新日期:1997-01-06 00:00:00

  • Membrane fusion of mumps virus with ghost erythrocytes and CV-1 cells.

    abstract::The octadecyl rhodamine (R18) fluorescent dequenching assay was used to examine membrane fusion between mumps virus and mammalian cells. Rapid fluorescent dequenching, indicative of membrane fusion, was observed when labeled mumps virus was mixed with either ghost erythrocytes or CV-1 cells. After 15 min a saturation ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90196-v

    authors: Di Simone C,Baldeschwieler JD

    更新日期:1992-11-01 00:00:00

  • Production and characterization of monoclonal antibodies to porcine group C rotaviruses cross-reactive with group A rotaviruses.

    abstract::Five monoclonal antibodies (MAbs) to porcine group (gp) C rotaviruses (Cowden and Ah strains) reactive with both gp A and C rotaviruses in cell culture immunofluorescence (CCIF) tests were produced and characterized. These MAbs reacted with three strains of gp A and two strains of gp C rotaviruses in a CCIF test and w...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90189-v

    authors: Tsunemitsu H,Ojeh CK,Jiang B,Simkins RA,Weilnau PA,Saif LJ

    更新日期:1992-11-01 00:00:00

  • Efficient production of Hantaan and Puumala pseudovirions for viral tropism and neutralization studies.

    abstract::Puumala (PUUV) and Hantaan (HTNV) viruses are hantaviruses within the family Bunyaviridae and associated with Hemorrhagic Fever with Renal Syndrome (HFRS) in humans. Little is known about how these viruses interact with host cells, though pathogenic hantaviruses interact with α(v)β(3) integrin. To study host cell inte...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2011.08.012

    authors: Higa MM,Petersen J,Hooper J,Doms RW

    更新日期:2012-02-20 00:00:00

  • Molecular variability and genetic structure of the population of soybean mosaic virus based on the analysis of complete genome sequences.

    abstract::The complete genomes of 30 Soybean mosaic virus (SMV) isolates and strains were sequenced in this study. Together with fourteen previously reported sequences, we analyzed the genetic structure of the SMV population. Analyses of genetic diversity showed that different genomic regions of SMV are under different evolutio...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.07.007

    authors: Seo JK,Ohshima K,Lee HG,Son M,Choi HS,Lee SH,Sohn SH,Kim KH

    更新日期:2009-10-10 00:00:00

  • Relative replication fitness of efavirenz-resistant mutants of HIV-1: correlation with frequency during clinical therapy and evidence of compensation for the reduced fitness of K103N + L100I by the nucleoside resistance mutation L74V.

    abstract::Efavirenz resistance during HIV-1 treatment failure is usually associated with the reverse transcriptase mutation K103N. L100I, V108I, or P225H can emerge after K103N and increase its level of efavirenz resistance. K103N + L100I is the most drug-resistant of the double mutants but is the least common clinically. We hy...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2006.05.021

    authors: Koval CE,Dykes C,Wang J,Demeter LM

    更新日期:2006-09-15 00:00:00

  • Recombinant measles viruses defective for RNA editing and V protein synthesis are viable in cultured cells.

    abstract::The measles virus (MV) phosphoprotein (P) gene encodes three proteins, P, C, and V. The V protein is synthesized by pseudo-templated transcription, also designated as RNA editing: during P gene transcription one G residue is inserted at a defined position in about 50% of the mRNAs. To study the importance of sequence ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.8339

    authors: Schneider H,Kaelin K,Billeter MA

    更新日期:1997-01-20 00:00:00

  • The p33 auxiliary replicase protein of Cucumber necrosis virus targets peroxisomes and infection induces de novo peroxisome formation from the endoplasmic reticulum.

    abstract::Tombusviruses replicate on pre-existing organelles such as peroxisomes or mitochondria, the membranes of which become extensively reorganized into multivesicular bodies (MVBs) during the infection process. Cucumber necrosis virus (CNV) has previously been shown to replicate in association with peroxisomes in yeast. We...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2013.12.035

    authors: Rochon D,Singh B,Reade R,Theilmann J,Ghoshal K,Alam SB,Maghodia A

    更新日期:2014-03-01 00:00:00

  • Recognition of influenza A virus nucleoprotein by an H-2-restricted cytotoxic T-cell clone.

    abstract::Cytotoxic T-cell clones raised against X-31 (H3N2) influenza virus in C57BL/6 mice can be directed against an influenza A virus subtype specific determinant (1). A representative T-cell clone (A3.1) has been used in combination with a set of genetically typed recombinant viruses, to show that the A/PR/8/34 nucleoprote...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(84)90413-6

    authors: Townsend AR,Skehel JJ,Taylor PM,Palese P

    更新日期:1984-03-01 00:00:00

  • Analysis of the complete genome sequence of two Korean sacbrood viruses in the Honey bee, Apis mellifera.

    abstract::The complete genomic RNAs of two Korean sacbrood virus (SBV) strains, which infect the honey bee, Apis mellifera, were sequenced. The two sequences (AmSBV-Kor19, AmSBV-Kor21) were distinguished by the presence or absence of a PstI restriction site. These strains comprised of 8784 bp and 8835 bp; contained a single lar...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2012.06.008

    authors: Choe SE,Nguyen LT,Noh JH,Kweon CH,Reddy KE,Koh HB,Chang KY,Kang SW

    更新日期:2012-10-10 00:00:00

  • Characteristics of neutralizing antibodies to adenovirus capsid proteins in human and animal sera.

    abstract::Although it is known that Ad5-specific neutralizing antibodies (NAbs) against three major viral capsid components (hexon, penton and fiber) are generated, differences in the frequency and nature of these pre-existing NAbs remain unclear. The results emphasized the contribution of anti-fiber antibodies to Ad5 neutraliz...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2012.12.014

    authors: Yu B,Dong J,Wang C,Zhan Y,Zhang H,Wu J,Kong W,Yu X

    更新日期:2013-03-15 00:00:00

  • Differential expression of the HHV-8 vGCR cellular homolog gene in AIDS-associated and classic Kaposi's sarcoma: potential role of HIV-1 Tat.

    abstract::Human herpesvirus 8 (HHV-8) has been causally linked to Kaposi's sarcoma (KS). There is significant homology between some HHV-8 genes and cellular genes including D-type cyclin (vCYC), G protein coupled receptor (vGCR), macrophage inflammatory proteins (vMIP-I, vMIP-II), bcl-2 (vBCL2), interferon regulatory factor-1 (...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.0125

    authors: Yen-Moore A,Hudnall SD,Rady PL,Wagner RF Jr,Moore TO,Memar O,Hughes TK,Tyring SK

    更新日期:2000-02-15 00:00:00

  • Characterization and template properties of RNA dimers generated during flock house virus RNA replication.

    abstract::Flock house virus (FHV) is the best studied member of the Nodaviridae, a family of small, nonenveloped, isometric RNA viruses of insects and fish. Nodavirus genomes comprise two single-stranded positive-sense RNA segments (RNAs 1 and 2) that encode the viral RNA-dependent RNA polymerase (RdRp) and capsid protein precu...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2001.1125

    authors: Albariño CG,Price BD,Eckerle LD,Ball LA

    更新日期:2001-10-25 00:00:00

  • Defining HIV-1 Vif residues that interact with CBFβ by site-directed mutagenesis.

    abstract::Vif is essential for HIV-1 replication in T cells and macrophages. Vif recruits a host ubiquitin ligase complex to promote proteasomal degradation of the APOBEC3 restriction factors by poly-ubiquitination. The cellular transcription cofactor CBFβ is required for Vif function by stabilizing the Vif protein and promotin...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2013.11.004

    authors: Matsui Y,Shindo K,Nagata K,Io K,Tada K,Iwai F,Kobayashi M,Kadowaki N,Harris RS,Takaori-Kondo A

    更新日期:2014-01-20 00:00:00

  • Identification and characterization of cauliflower mosaic virus replication complexes--analogy to hepatitis B viruses.

    abstract::Putative replication complexes of cauliflower mosaic virus (CaMV) which resemble hepatitis B virus replication complexes in several respects have been identified. The CaMV replication complexes contain a heterogeneous population of minus-strand DNA ranging in size from less than 600 nucleotides to full genome length o...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(85)90109-6

    authors: Marsh L,Kuzj A,Guilfoyle T

    更新日期:1985-05-01 00:00:00

  • A comparison of the nucleotide sequence homologies of three isolates of bean yellow mosaic virus and their relationship to other potyviruses.

    abstract::3H-labelled complementary DNA (cDNA) was reverse transcribed from the RNA of three biologically distinct isolates of bean yellow mosaic virus (BYMV-G, Q, and S) by the random primer method of Taylor et al. [Biochim. Biophys. Acta 442, 324-330 (1976)]. Excess virus RNA was hybridized with each of the cDNAs and percenta...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(81)90074-x

    authors: Abu-Samah N,Randles JW

    更新日期:1981-04-30 00:00:00

  • Effects of egg-adaptation on the receptor-binding properties of human influenza A and B viruses.

    abstract::Propagation of human influenza viruses in embryonated chicken eggs (CE) results in the selection of variants with amino acid substitutions near the receptor-binding site of the hemagglutinin (HA) molecule. To evaluate the mechanisms by which these substitutions enable human virus growth in CE, we studied the binding o...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.9732

    authors: Gambaryan AS,Robertson JS,Matrosovich MN

    更新日期:1999-06-05 00:00:00

  • Genetic expression in bacteriophage lambda. IV. Effects of P2 prophage on lambda inhibition of host synthesis and lambda gene expression.

    abstract::The effects of P2 prophage on lambda-mediated depression of host metabolism, and on lambda macromolecular synthesis have been studied. Experiments employing certain lambdabio deletion mutants and lambda-related phages suggest that the same gene products are involved in inhibition of host metabolism (Hin+ function) and...

    journal_title:Virology

    pub_type: 杂志文章

    doi:

    authors: Cohen SN,Chang AC

    更新日期:1971-11-01 00:00:00

  • Isolation of a monoclonal antibody that recognizes the origin binding domain of JCV, but not SV40, large T-antigen.

    abstract::Within immunocompromised populations, the JC polyomavirus is the cause of the often-fatal disease Progressive Multifocal Leukoencephalopathy (PML). JC virus encodes a protein, termed T-antigen (T-ag), which is essential for its replication and pathogenicity. Previous studies of JCV T-ag have, in general, used antibodi...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2016.07.006

    authors: Grubman SA,Shin J,Phelan PJ,Gong A,Can H,Dilworth R,Kini SK,Gagnon D,Archambault J,Meinke G,Bohm A,Jefferson DM,Bullock PA

    更新日期:2016-10-01 00:00:00

  • Construction of chimeric arteriviruses reveals that the ectodomain of the major glycoprotein is not the main determinant of equine arteritis virus tropism in cell culture.

    abstract::The recent development of arterivirus full-length cDNA clones makes possible the construction of chimeric arteriviruses for fundamental and applied studies. Using an equine arteritis virus (EAV) infectious cDNA clone, we have engineered chimeras in which the ectodomains of the two major envelope proteins, the glycopro...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2001.1074

    authors: Dobbe JC,van der Meer Y,Spaan WJ,Snijder EJ

    更新日期:2001-09-30 00:00:00

  • Europe was a hub for the global spread of potato virus S in the 19th century.

    abstract::Potato virus S (PVS) is a major plant pathogen that causes considerable losses in global potato production. Knowledge of the evolutionary history and spatio-temporal dynamics of PVS is vital for developing sustainable management schemes. In this study, we investigated the phylodynamics of the virus by analysing 103 nu...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2018.09.022

    authors: Duan G,Zhan F,Du Z,Ho SYW,Gao F

    更新日期:2018-12-01 00:00:00

  • Subcellular localization and some biochemical properties of the flavivirus Kunjin nonstructural proteins NS2A and NS4A.

    abstract::In a previous study on the replication of Kunjin virus using immunoelectron microscopy (E. G. Westaway, J. M. Mackenzie, M. T. Kenney, M. K. Jones, and A. A. Khromykh, 1997, J. Virol. 71, 6650-6661), NS1 and NS3 were found associated with double-stranded RNA (dsRNA) within vesicle packets (VP) in infected Vero cells, ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1998.9156

    authors: Mackenzie JM,Khromykh AA,Jones MK,Westaway EG

    更新日期:1998-06-05 00:00:00

  • Active and separate secretion of fiber and penton base during the early phase of Ad2 or Ad5 infection.

    abstract::Fiber and penton base overproduced in adenovirus (Ad) infected cells can be secreted prior to progeny release and thereby regulate progeny spread. We aimed to investigate the mechanisms of fiber and penton base secretion in Ad2- or Ad5-infected A549 cells. Our flow cytometry analyses detected abundant surface fiber mo...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2017.02.018

    authors: Yan Y,Zhang B,Hou W,Lin H,Rebetz J,Hong SS,Wang Y,Ran L,Fan X

    更新日期:2017-05-01 00:00:00

  • Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120.

    abstract::Neutralizing antibodies (Nabs) are thought to play an important role in prevention and control of HIV-1 infection and should be targeted by an AIDS vaccine. It is critical to understand how HIV-1 induces Nabs by analyzing viral sequences in both tested viruses and sera. Neutralization susceptibility to antibodies in a...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2010.09.031

    authors: Kirchherr JL,Hamilton J,Lu X,Gnanakaran S,Muldoon M,Daniels M,Kasongo W,Chalwe V,Mulenga C,Mwananyanda L,Musonda RM,Yuan X,Montefiori DC,Korber BT,Haynes BF,Gao F

    更新日期:2011-01-20 00:00:00

  • Adenoviruses induce autophagy to promote virus replication and oncolysis.

    abstract::Adenoviruses with deletion of E1b have been used in clinical trials to treat cancers that are resistant to conventional therapies. The efficacy of viral replication within cancer cells determines the results of oncolytic therapy, which remains poorly understood and requires further improvement. In this report, we show...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2011.04.017

    authors: Rodriguez-Rocha H,Gomez-Gutierrez JG,Garcia-Garcia A,Rao XM,Chen L,McMasters KM,Zhou HS

    更新日期:2011-07-20 00:00:00

  • Varicella-zoster virus-specific gp140: a highly immunogenic and disulfide-linked structural glycoprotein.

    abstract::A 140,000-dalton disulfide-linked glycoprotein (gp140) specified by varicella-zoster virus (VZV) in infected cultured cells was identified and precipitated by two murine monoclonal antibodies (VZ-151 and VZ-158). When analyzed under reducing conditions by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, gp14...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(84)90098-9

    authors: Grose C,Edwards DP,Weigle KA,Friedrichs WE,McGuire WL

    更新日期:1984-01-15 00:00:00

  • Capsid protein and helper component-proteinase function as potyvirus cell-to-cell movement proteins.

    abstract::The role of bean common mosaic necrosis potyvirus (BCMNV) and lettuce mosaic potyvirus (LMV) proteins was investigated in terms of their capacity to function as viral movement proteins (MPs). Using Escherichia coli-expressed proteins and microinjection techniques, direct evidence was obtained that both the potyviral c...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1997.8777

    authors: Rojas MR,Zerbini FM,Allison RF,Gilbertson RL,Lucas WJ

    更新日期:1997-10-27 00:00:00

  • Alfalfa mosaic virus temperature-sensitive mutants. V. The nucleotide sequence of TBTS 7 RNA 3 shows limited nucleotide changes and evidence for heterologous recombination.

    abstract::Nucleotide sequence determination of the coat protein cistron of the alfalfa mosaic virus (AIMV) temperature-sensitive mutant, Tbts 7 (uv) revealed a small number of point mutations of which only one results in the replacement of an amino acid: the asparagine residue at position 126 is replaced by an aspartate residue...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90609-0

    authors: Huisman MJ,Cornelissen BJ,Groenendijk CF,Bol JF,van Vloten-Doting L

    更新日期:1989-08-01 00:00:00

  • Purification and properties of the pea enation mosaic virus.

    abstract::A procedure was developed for the purification of the pea enation mosaic virus (PEMV) using differential and rate zonal centrifugation in sucrose density gradients. Infectivity and serological data indicated that the highest virus concentration occurs in infected peas (Pisum sativum) 10-12 days after mechanical inocul...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(66)90060-2

    authors: Izadpanah K,Shepherd RJ

    更新日期:1966-03-01 00:00:00