Relative replication fitness of efavirenz-resistant mutants of HIV-1: correlation with frequency during clinical therapy and evidence of compensation for the reduced fitness of K103N + L100I by the nucleoside resistance mutation L74V.

Abstract:

:Efavirenz resistance during HIV-1 treatment failure is usually associated with the reverse transcriptase mutation K103N. L100I, V108I, or P225H can emerge after K103N and increase its level of efavirenz resistance. K103N + L100I is the most drug-resistant of the double mutants but is the least common clinically. We hypothesized that differences in replication efficiency, or fitness, influence the relative frequencies of these secondary efavirenz resistance mutations in clinical isolates. We measured fitness of each secondary mutant introduced into HIV(NL4-3), alone and in combination with K103N, using growth competition assays in H9 cells. In the absence of efavirenz, the fitness of V108I was indistinguishable from wild type. K103N, L100I, and P225H were minimally, but consistently, less fit than wild type. K103N + L100I had a greater reduction in fitness and was less fit than K103N + V108I and K103N + P225H. The fitness defect of K103N + L100I relative to K103N was completely compensated for by the addition of the nucleoside resistance mutation L74V. In the presence of efavirenz, L100I was less fit than K103N, and K103N + L100I was more fit than K103N + V108I. Our studies suggest the primary driving force behind the selection of secondary efavirenz resistance mutations is the acquisition of higher levels of drug resistance, but the specific secondary mutations to emerge are those with the least cost in terms of replication efficiency. In addition, nucleoside and NNRTI resistance mutations can interact to affect HIV replication efficiency; these interactions may influence which mutations emerge during treatment failure. These studies have important implications for the design of more durable NNRTI-nucleoside combination regimens.

journal_name

Virology

journal_title

Virology

authors

Koval CE,Dykes C,Wang J,Demeter LM

doi

10.1016/j.virol.2006.05.021

subject

Has Abstract

pub_date

2006-09-15 00:00:00

pages

184-92

issue

1

eissn

0042-6822

issn

1096-0341

pii

S0042-6822(06)00340-0

journal_volume

353

pub_type

杂志文章

相关文献

VIROLOGY文献大全
  • Activation of HTLV-I transcription in the presence of Tax is independent of the acetylation of CREB-2 (ATF-4).

    abstract::We have previously demonstrated that the bZIP transcription factor CREB-2, also called ATF-4, trans-activates, in association with the viral protein Tax, the human T-cell leukemia virus type I (HTLV-I) promoter. In this study, we have examined whether CREB-2 acetylation affects transcriptional activation mediated by T...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2002.1501

    authors: Gachon F,Devaux C,Mesnard JM

    更新日期:2002-08-01 00:00:00

  • The Potyviridae P1a leader protease contributes to host range specificity.

    abstract::The P1a protein of the ipomovirus Cucumber vein yellowing virus is one of the self-cleavage serine proteases present in Potyviridae family members. P1a is located at the N-terminal end of the viral polyprotein, and is closely related to potyviral P1 protease. For its proteolytic activity, P1a requires a still unknown ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2014.12.013

    authors: Shan H,Pasin F,Valli A,Castillo C,Rajulu C,Carbonell A,Simón-Mateo C,García JA,Rodamilans B

    更新日期:2015-02-01 00:00:00

  • Alphavirus production is inhibited in neurofibromin 1-deficient cells through activated RAS signalling.

    abstract::Virus-host interactions essential for alphavirus pathogenesis are poorly understood. To address this shortcoming, we coupled retrovirus insertional mutagenesis and a cell survival selection strategy to generate clonal cell lines broadly resistant to Sindbis virus (SINV) and other alphaviruses. Resistant cells had sign...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2008.03.025

    authors: Kolokoltsova OA,Domina AM,Kolokoltsov AA,Davey RA,Weaver SC,Watowich SJ

    更新日期:2008-07-20 00:00:00

  • In hepatocytes infected with duck hepatitis B virus, the template for viral RNA synthesis is amplified by an intracellular pathway.

    abstract::During the productive phase of chronic hepadnaviral infections, virion DNA synthesis occurs in the cytoplasm of the infected hepatocyte, but viral RNA is synthesized in the nucleus, apparently from a covalently closed, circular (CCC) viral DNA. J. Tuttleman, C. Pourcel, and J. Summers (1986a, Cell 47, 451-460) have sh...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90206-7

    authors: Wu TT,Coates L,Aldrich CE,Summers J,Mason WS

    更新日期:1990-03-01 00:00:00

  • RNA segment 5 of broadhaven virus, a tick-borne orbivirus, shows sequence homology with segment 5 of bluetongue virus.

    abstract::The sequence of Broadhaven (BRD) virus segment 5, the major genetic determinant of serotype, is 1658 nucleotides in length and contains a single open reading frame (ORF) having the coding capacity for a protein of Mr 52.5K. Comparison of the ORF of segment 5 of BRD virus with published sequences of bluetongue virus (B...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90320-q

    authors: Moss SR,Fukusho A,Nuttall PA

    更新日期:1990-11-01 00:00:00

  • Identification and genomic mapping of the ORF3 and VPg proteins in feline calicivirus virions.

    abstract::Two minor proteins with molecular masses of 8.5 and 15.5 kDa were identified in feline calicivirus (FCV) virions. Direct sequence analysis showed that the N-terminal sequence of the 8.5-kDa protein was identical to that of the predicted protein encoded by open reading frame 3 (ORF3) of the FCV genome. The N-terminal s...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2000.0579

    authors: Sosnovtsev SV,Green KY

    更新日期:2000-11-10 00:00:00

  • Site-specific rearrangements in the long terminal repeat of extra mouse mammary tumor proviruses in murine T-cell leukemias.

    abstract::Extra MMTV proviruses in T-cell leukemias of GR and C57/BL10 mice contain alterations in their long terminal repeat (LTR) sequence. The four different leukemias studied contain different deletions, but common hallmarks were observed around the recombination sites. At the 5' end of the deletions we observed a common no...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(86)90431-9

    authors: Michalides R,Wagenaar E

    更新日期:1986-10-15 00:00:00

  • Structure of the C-terminal head domain of the fowl adenovirus type 1 short fibre.

    abstract::There are more than 100 known adenovirus serotypes, including 50 human serotypes. They can infect all 5 major vertebrate classes but only Aviadenovirus infecting birds and Mastadenovirus infecting mammals have been well studied. CELO (chicken embryo lethal orphan) adenovirus is responsible for mild respiratory patholo...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2008.05.011

    authors: El Bakkouri M,Seiradake E,Cusack S,Ruigrok RW,Schoehn G

    更新日期:2008-08-15 00:00:00

  • RNA-binding proteins of coronavirus MHV: detection of monomeric and multimeric N protein with an RNA overlay-protein blot assay.

    abstract::RNA-binding proteins of coronavirus MHV-A59 were identified using an RNA overlay-protein blot assay (ROPBA). The major viral RNA-binding protein in virions and infected cells was the phosphorylated nucleocapsid protein N (50K). A new 140K virus structural protein was identified as a minor RNA-binding protein both in v...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(86)90305-3

    authors: Robbins SG,Frana MF,McGowan JJ,Boyle JF,Holmes KV

    更新日期:1986-04-30 00:00:00

  • Expression of Epstein-Barr virus membrane antigen gp350/220 in E. coli and in insect cells.

    abstract::The Epstein-Barr virus open reading frame BLLF1 encodes the major envelope glycoproteins gp350 and gp220. Fragments of the gp350/220 gene were expressed in Escherichia coli in order to define regions of the polypeptide chain reacting with human sera. The C-terminal half of the protein was sufficient for recognition by...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90207-6

    authors: Nuebling CM,Buck M,Boos H,von Deimling A,Mueller-Lantzsch N

    更新日期:1992-11-01 00:00:00

  • Multiple determinants for growth of human immunodeficiency virus type 1 in monocyte-macrophages.

    abstract::Attempts to define the genetic determinants required for efficient growth of human immunodeficiency virus type 1 (HIV-1) in monocyte-macrophages were made by constructing chimeras between two infectious clones of HIV-1 (HXB2 and LW/C), which despite only minor differences in their DNA sequence have striking difference...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/s0042-6822(95)80082-4

    authors: Malykh A,Reitz MS Jr,Louie A,Hall L,Lori F

    更新日期:1995-01-10 00:00:00

  • Capsid is an important determinant for functional complementation of murine leukemia virus and spleen necrosis virus Gag proteins.

    abstract::In this report, we examined the abilities and requirements of heterologous Gag proteins to functionally complement each other to support viral replication. Two distantly related gammaretroviruses, murine leukemia virus (MLV) and spleen necrosis virus (SNV), were used as a model system because SNV proteins can support ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2006.10.038

    authors: Lee SK,Boyko V,Hu WS

    更新日期:2007-04-10 00:00:00

  • Serological characterization of human T-cell leukemia (lymphotropic) virus, type I (HTLV-I) small envelope protein.

    abstract::Murine monoclonal antibodies were developed against the protein products produced by murine C127 cells which had been transfected with a recombinant plasmid clone containing the human T-cell leukemia (lymphotropic) virus type I (HTLV-I) proviral DNA coding regions for part of env, px, and the 3' LTR. Four antibodies w...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(86)90270-9

    authors: Newman MJ,Baker IT,Reitz MS,Eiden M,Blattner WA,Gallo RC,Mann DL

    更新日期:1986-04-15 00:00:00

  • Identification of Db- and Kb-restricted subdominant cytotoxic T-cell responses in lymphocytic choriomeningitis virus-infected mice.

    abstract::Antiviral cytotoxic T-cells are critical for control of lymphocytic choriomeningitis virus (LCMV) infection in mice. In H-2b mice, the antiviral response is directed against three Db-restricted epitopes in the viral nucleoprotein (NP396-404) and glycoprotein (GP276-286 and GP33-41). Our present data revealed a clear h...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1997.8934

    authors: van der Most RG,Murali-Krishna K,Whitton JL,Oseroff C,Alexander J,Southwood S,Sidney J,Chesnut RW,Sette A,Ahmed R

    更新日期:1998-01-05 00:00:00

  • The OC43 human coronavirus envelope protein is critical for infectious virus production and propagation in neuronal cells and is a determinant of neurovirulence and CNS pathology.

    abstract::The OC43 strain of human coronavirus (HCoV-OC43) is an ubiquitous respiratory tract pathogen possessing neurotropic capacities. Coronavirus structural envelope (E) protein possesses specific motifs involved in protein-protein interaction or in homo-oligomeric ion channel formation, which are known to play various role...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2017.12.023

    authors: Stodola JK,Dubois G,Le Coupanec A,Desforges M,Talbot PJ

    更新日期:2018-02-01 00:00:00

  • Deletion and substitution analysis defines regions and residues within the phosphoprotein of bovine respiratory syncytial virus that affect transcription, RNA replication, and interaction with the nucleoprotein.

    abstract::The phosphoprotein (P) of bovine respiratory syncytial virus (BRSV) is a multifunctional protein that plays a central role in transcription and replication of the viral genomic RNA. To investigate the domains and specific residues involved in different activities of the P protein, we generated a total of 22 deletion a...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2001.0960

    authors: Khattar SK,Yunus AS,Collins PL,Samal SK

    更新日期:2001-07-05 00:00:00

  • In Nicotiana species, an artificial microRNA corresponding to the virulence modulating region of Potato spindle tuber viroid directs RNA silencing of a soluble inorganic pyrophosphatase gene and the development of abnormal phenotypes.

    abstract::Potato spindle tuber viroid (PSTVd) is a small non-protein-coding RNA pathogen that can induce disease symptoms in a variety of plant species. How PSTVd induces disease symptoms is a long standing question. It has been suggested that PSTVd-derived small RNAs (sRNAs) could direct RNA silencing of a targeted host gene(s...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2013.12.019

    authors: Eamens AL,Smith NA,Dennis ES,Wassenegger M,Wang MB

    更新日期:2014-02-01 00:00:00

  • Molecular dissection of Flock house virus protein B2 reveals that electrostatic interactions between N-terminal domains of B2 monomers are critical for dimerization.

    abstract::Flock house virus (FHV) encodes a suppressor protein B2 to overcome antiviral RNA silencing during infection. Biochemical analyses have shown that a homodimer of B2 binds to double-stranded RNA to inhibit dicer-mediated cleavage of dsRNA and incorporation of small interfering RNAs into the RNA-induced silencing comple...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2012.05.023

    authors: Seo JK,Kwon SJ,Rao AL

    更新日期:2012-10-25 00:00:00

  • The capsid architecture of channel catfish virus, an evolutionarily distant herpesvirus, is largely conserved in the absence of discernible sequence homology with herpes simplex virus.

    abstract::Although herpesviruses have a wide host range and their genomes vary substantially in size, the nucleocapsid appears to be a conservative element of viral design. The capsid shell is icosahedrally symmetric (T = 16), and 125 nm in diameter and 15nm thick in the case of herpes simplex virus 1 (HSV-1). Channel catfish v...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0016

    authors: Booy FP,Trus BL,Davison AJ,Steven AC

    更新日期:1996-01-15 00:00:00

  • Double-stranded strong-stop DNA and the second template switch in human immunodeficiency virus (HIV) DNA synthesis.

    abstract::Synthesis of unintegrated retroviral DNA via reverse transcription is thought to involve two separate template switches. Minus-strand strong-stop DNA, a major product of in vitro reactions using detergent-treated virions, is synthesized prior to the first template switch. Plus-strand strong-stop DNA, which is found ba...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1993.1237

    authors: Li P,Stephenson AJ,Kuiper LJ,Burrell CJ

    更新日期:1993-05-01 00:00:00

  • In vitro fidelity of the prototype primate foamy virus (PFV) RT compared to HIV-1 RT.

    abstract::We compared the in vitro fidelity of wild-type human immunodeficiency virus type-1 (HIV-1) reverse transcriptase (RT) and the prototype foamy virus (PFV) RT. Both enzymes had similar error rates for single nucleotide substitutions; however, PFV RT did not appear to make errors at specific hotspots, like HIV-1 RT. In a...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.05.034

    authors: Boyer PL,Stenbak CR,Hoberman D,Linial ML,Hughes SH

    更新日期:2007-10-25 00:00:00

  • Ceramide regulates SR protein phosphorylation during adenoviral infection.

    abstract::In this study, we show that adenoviral infection induced accumulation of the sphingolipid ceramide in a dose- and time-dependent manner. This accumulation preceded cell lysis, occurred in the absence of biochemical evidence of apoptosis, and was derived from de novo synthesis of ceramide. An adenovirus mutant that lac...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2005.09.060

    authors: Kanj SS,Dandashi N,El-Hed A,Harik H,Maalouf M,Kozhaya L,Mousallem T,Tollefson AE,Wold WS,Chalfant CE,Dbaibo GS

    更新日期:2006-02-05 00:00:00

  • Mapping nucleotides in the 126-kDa protein gene that control the differential symptoms induced by two strains of tobacco mosaic virus.

    abstract::The differential symptom determinants of the Holmes' masked (M) and U1 strains of tobacco mosaic virus previously were mapped to the 5'-coterminal open reading frame (ORF) encoding the 126-kDa protein and the N-terminal two-thirds of the 183-kDa protein. Both proteins influence viral RNA accumulation, but the function...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0368

    authors: Shintaku MH,Carter SA,Bao Y,Nelson RS

    更新日期:1996-07-01 00:00:00

  • Induction of an antiviral state by interferon in the absence of elevated levels of 2,5-oligo(A) synthetase and eIF-2 kinase.

    abstract::A series of clones has been derived from an interferon-resistant murine cell line, Ltk- aprt-, and their antiviral properties have been characterized. In the parental Ltk- aprt- line interferon is unable to establish antiviral properties or to increase the levels of 2,5-oligo(A) synthetase, the 2,5-oligo(A)-activated ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(88)90400-x

    authors: Lewis JA

    更新日期:1988-01-01 00:00:00

  • Calu-3 cells are largely resistant to entry driven by filovirus glycoproteins and the entry defect can be rescued by directed expression of DC-SIGN or cathepsin L.

    abstract::Priming of the viral glycoprotein (GP) by the cellular proteases cathepsin B and L (CatB, CatL) is believed to be essential for cell entry of filoviruses. However, pseudotyping systems that predominantly produce non-filamentous particles have frequently been used to prove this concept. Here, we report that GP-mediated...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2019.03.020

    authors: González-Hernández M,Müller A,Hoenen T,Hoffmann M,Pöhlmann S

    更新日期:2019-06-01 00:00:00

  • Construction of chimeric arteriviruses reveals that the ectodomain of the major glycoprotein is not the main determinant of equine arteritis virus tropism in cell culture.

    abstract::The recent development of arterivirus full-length cDNA clones makes possible the construction of chimeric arteriviruses for fundamental and applied studies. Using an equine arteritis virus (EAV) infectious cDNA clone, we have engineered chimeras in which the ectodomains of the two major envelope proteins, the glycopro...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2001.1074

    authors: Dobbe JC,van der Meer Y,Spaan WJ,Snijder EJ

    更新日期:2001-09-30 00:00:00

  • Substrate specificity of the NS3 serine proteinase of hepatitis C virus as determined by mutagenesis at the NS3/NS4A junction.

    abstract::Hepatitis C virus (HCV) encodes a polyprotein that is processed to produce the structural and nonstructural proteins of the virus. Nonstructural protein 3 (NS3) is a serine proteinase that cleaves the polyprotein to release the NS4A, NS4B, NS5A, and NS5B proteins. To characterize the substrate specificity of NS3, we s...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1994.1520

    authors: Leinbach SS,Bhat RA,Xia SM,Hum WT,Stauffer B,Davis AR,Hung PP,Mizutani S

    更新日期:1994-10-01 00:00:00

  • Identification of tolerated insertion sites in poliovirus non-structural proteins.

    abstract::Insertion of nucleotide sequences encoding "tags" that can be expressed in specific viral proteins during an infection is a useful strategy for purifying viral proteins and their functional complexes from infected cells and/or for visualizing the dynamics of their subcellular location over time. To identify regions in...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2010.09.028

    authors: Teterina NL,Lauber C,Jensen KS,Levenson EA,Gorbalenya AE,Ehrenfeld E

    更新日期:2011-01-05 00:00:00

  • Porcine endogenous retroviruses inhibit human immune cell function: risk for xenotransplantation?

    abstract::Transgenic pigs are currently the most favored potential source of organs for xenotransplantation. Like all mammalian species they all harbor endogenous retroviruses in their genome. These porcine endogenous retroviruses (PERVs) are produced from several primary cells and cell lines and are able to infect human cells....

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.0149

    authors: Tacke SJ,Kurth R,Denner J

    更新日期:2000-03-01 00:00:00

  • Dimerization of the human papillomavirus E7 oncoprotein in vivo.

    abstract::We have used a yeast two-hybrid system to show that human papillomavirus E7 proteins can form oligomeric complexes in vivo. The carboxyl-terminal cysteine-rich metal-binding domain is critical for this activity although amino-terminal sequences also contribute to oligomerization. Our experiments also reveal that E7 po...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1995.9926

    authors: Clemens KE,Brent R,Gyuris J,Münger K

    更新日期:1995-12-01 00:00:00