Composition bias and genome polarity of RNA viruses.

Abstract:

:I have observed a relationship between GC content in coding sequences of RNA viruses and their genome polarity. Positive-stranded RNA viruses have significantly higher GC contents than negative-stranded RNA viruses. Coding sequences of all negative-stranded RNA viruses are biased toward high A in coding strands (high T in genomes), while two distinct patterns were observed among positive-stranded RNA genomes. This finding suggests that RNA viruses with different genome polarity are under different mutational pressure, which may be a consequence of the difference in the strategies of viral genome expression and replication. The GC content directly affects the viral codon adaptation index using highly expressed human genes as the reference set, which may theoretically predict the efficiency of viral gene expression in human cells.

journal_name

Virus Res

journal_title

Virus research

authors

Auewarakul P

doi

10.1016/j.virusres.2004.10.004

subject

Has Abstract

pub_date

2005-04-01 00:00:00

pages

33-7

issue

1

eissn

0168-1702

issn

1872-7492

pii

S0168-1702(04)00374-0

journal_volume

109

pub_type

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