Phylogenetic relationships of Irkut and West Caucasian bat viruses within the Lyssavirus genus and suggested quantitative criteria based on the N gene sequence for lyssavirus genotype definition.

Abstract:

:The nucleoprotein (N), phosphoprotein (P) and glycoprotein (G) genes of Irkut and West Caucasian bat viruses (WCBV) were sequenced and compared with those of other lyssaviruses. N gene nucleotide identities provided unequivocal separation of all lyssavirus genotypes with an identity threshold of 82%. On this basis, Irkut virus should be considered as a new genotype with particular relatedness to genotypes 4 and 5 (78.0-78.6% identity for N gene nucleotides and 90.4-92.6% for amino acids). Furthermore, genotypes 4-6, together with Aravan, Khujand and Irkut viruses, present a solid phylogroup of Old World bat lyssaviruses. This relationship is apparent using all three viral genes, and causes overlap between intragenotype and intergenotype identities for the P gene (Aravan, Khujand viruses and genotype 6) and for the G gene (Aravan, Khujand, genotypes 5 and 6). WCBV is the most divergent of known lyssaviruses with only limited relatedness to genotypes 2 and 3.

journal_name

Virus Res

journal_title

Virus research

authors

Kuzmin IV,Hughes GJ,Botvinkin AD,Orciari LA,Rupprecht CE

doi

10.1016/j.virusres.2005.03.008

subject

Has Abstract

pub_date

2005-07-01 00:00:00

pages

28-43

issue

1

eissn

0168-1702

issn

1872-7492

pii

S0168-1702(05)00072-9

journal_volume

111

pub_type

杂志文章
  • Molecular relationships in infectious pancreatic necrosis virus.

    abstract::Infectious pancreatic necrosis virus (IPNV), a Birnaviridae with a double-stranded RNA genome of two segments, is an important aquatic pathogen. Previous characterizations of the RNA and polypeptide patterns of different IPNV isolates have uncovered a wide variety of electropherotypes. We used RNA fingerprinting analy...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/0168-1702(95)00035-o

    authors: Hsu YL,Chen CC,Wu JL

    更新日期:1995-08-01 00:00:00

  • Encephalomyocarditis virus is potentially derived from eastern bent-wing bats living in East Asian countries.

    abstract::Bats are reservoir hosts of many zoonotic viruses and identification of viruses that they carry is important. This study aimed to use high throughput screening to identify the viruses in fecal guano of Taiwanese insectivorous bats caves in order to obtain more information on bat-derived pathogenic viruses in East Asia...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2018.10.020

    authors: Doysabas KCC,Oba M,Furuta M,Iida K,Omatsu T,Furuya T,Okada T,Sutummaporn K,Shimoda H,Wong ML,Wu CH,Ohmori Y,Kobayashi R,Hengjan Y,Yonemitsu K,Kuwata R,Kim YK,Han SH,Sohn JH,Han SH,Suzuki K,Kimura J,Maeda K,O

    更新日期:2019-01-02 00:00:00

  • Naturally occurring NS3 resistance-associated variants in hepatitis C virus genotype 1: Their relevance for developing countries.

    abstract::Hepatitis C virus (HCV) is a major cause of global morbidity and mortality, with an estimated 130-150 million infected individuals worldwide. HCV is a leading cause of chronic liver diseases including cirrhosis and hepatocellular carcinoma. Current treatment options in developing countries involve pegylated interferon...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2016.07.008

    authors: Echeverría N,Betancour G,Gámbaro F,Hernández N,López P,Chiodi D,Sánchez A,Boschi S,Fajardo A,Sóñora M,Moratorio G,Cristina J,Moreno P

    更新日期:2016-09-02 00:00:00

  • Regulatory properties of the integrated long terminal repeat of the feline immunodeficiency virus.

    abstract::To examine the regulatory properties of feline immunodeficiency virus (FIV) long terminal repeat (LTR) integrated into host chromatin, Crandell feline kidney cells were stably transfected with the FIV LTR that directs the bacterial chloramphenicol acetyltransferase (CAT) gene. Using these cells, we examined the effect...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/0168-1702(96)01284-1

    authors: Ikeda Y,Kawaguchi Y,Tomonaga K,Inoshima Y,Kohmoto M,Miyazawa T,Mikami T

    更新日期:1996-04-01 00:00:00

  • Changes in antiviral susceptibility to entry inhibitors and endocytic uptake of dengue-2 virus serially passaged in Vero or C6/36 cells.

    abstract::The aim of the present study was to analyze the influence of virus origin, mammalian or mosquito cell-derived, on antiviral susceptibility of DENV-2 to entry inhibitors and the association of this effect with any alteration in the mode of entry into the cell. To this end, ten serial passages of DENV-2 were performed i...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2014.02.011

    authors: Acosta EG,Piccini LE,Talarico LB,Castilla V,Damonte EB

    更新日期:2014-05-12 00:00:00

  • Synonymous codon usage pattern analysis of Hepatitis D virus.

    abstract::Hepatitis D virus (HDV) is the smallest animal infecting RNA virus with unique features distinguishing it from other Hepatitis viruses. Codon usage variation is considered as an indicator of the forces shaping genome evolution. RSCU (relative synonymous codon usage) values, nucleotide contents, ENC (effective number o...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2013.01.007

    authors: Bishal AK,Mukherjee R,Chakraborty C

    更新日期:2013-05-01 00:00:00

  • Full-length genome of a novel genotype 3 hepatitis E virus strain obtained from domestic pigs in Japan.

    abstract::Hepatitis E virus (HEV) causes acute or chronic hepatitis in humans and can be transmitted via the fecal-oral route. Pigs are one of the main reservoirs for this infection. Sixty pigs, 4-5 months of age, on a swine herd in Japan had detectable anti-HEV IgG antibodies, and five (8.3%) of them had ongoing infection of g...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2017.08.003

    authors: Primadharsini PP,Miyake M,Kunita S,Nishizawa T,Takahashi M,Nagashima S,Tanggis,Ohnishi H,Kobayashi T,Nishiyama T,Jirintai S,Okamoto H

    更新日期:2017-08-15 00:00:00

  • Development of a stable insect cell line constitutively expressing rotavirus VP2.

    abstract::An insect High-Five cell line was generated constitutively and stably expressing the VP2 protein of rotavirus RF strain leading to the formation of core-like particles. The integration of the VP2 gene was confirmed by PCR, Real-time PCR and Southern blot, and the protein expression was confirmed by Western blot and im...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2012.12.015

    authors: Shoja Z,Tagliamonte M,Jalilvand S,Mokhtari-Azad T,Hamkar R,Shahmahmoodi S,Rezaei F,Tornesello M,Buonaguro FM,Buonaguro L,Nategh R

    更新日期:2013-03-01 00:00:00

  • Differential roles of the 5' untranslated regions of cucumber mosaic virus RNAs 1, 2, 3 and 4 in translational competition.

    abstract::RNA species of plant tripartite RNA viruses show distinct translational activities in vitro when the viral RNA concentration is high. However, it is not known what causes the differential translation of virion RNAs. Using an in vitro wheat germ translation system, we investigated the translation efficiencies and compe...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(00)00120-9

    authors: Kwon CS,Chung WI

    更新日期:2000-02-01 00:00:00

  • Characterization of caprine herpesvirus 1 glycoprotein D gene and its translation product.

    abstract::Caprine herpesvirus 1 (CpHV-1) is responsible of systemic infection in neonatal kids as well as abortion and fertility disorders in adult goats. This virus is closely related to bovine herpesvirus 1 (BoHV-1) which causes infectious bovine rhinotracheitis. Glycoprotein D (gD) mediates important functions in alphaherpes...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2005.07.009

    authors: Keuser V,Detry B,Thiry J,de Fays K,Schynts F,Pastoret PP,Vanderplasschen A,Thiry E

    更新日期:2006-02-01 00:00:00

  • Prevalence and diversity of mycoviruses infecting the plant pathogen Ustilaginoidea virens.

    abstract::Rice false smut caused by Ustilaginoidea virens is a destructive disease in many rice-growing areas. Mycoviruses have been described in many fungal species, but there is little information regarding mycoviruses in U. virens. In this study, double-stranded (ds) RNA banding patterns were assessed in 198 wild-type isolat...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2014.08.022

    authors: Jiang Y,Zhang T,Luo C,Jiang D,Li G,Li Q,Hsiang T,Huang J

    更新日期:2015-01-02 00:00:00

  • Quasispecies and its impact on viral hepatitis.

    abstract::Quasispecies dynamics mediates adaptability of RNA viruses through a number of mechanisms reviewed in the present article, with emphasis on the medical implications for the hepatitis viruses. We discuss replicative and non-replicative molecular mechanisms of genome variation, modulating effects of mutant spectra, and ...

    journal_title:Virus research

    pub_type: 杂志文章,评审

    doi:10.1016/j.virusres.2007.02.001

    authors: Domingo E,Gomez J

    更新日期:2007-08-01 00:00:00

  • Trans-activation of viral tk promoters by proteins encoded by varicella zoster virus open reading frames 61 and 62.

    abstract::Plasmids containing the varicella zoster virus (VZV) open reading frames (ORFs) 61 and 62 were used in a transient co-transfection assay to test for trans-activation of the VZV and herpes simplex virus type 1 (HSV-1) thymidine kinase (tk) promoters. The trans-activating potential of the polypeptides encoded by these V...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/0168-1702(90)90013-2

    authors: Cabirac GF,Mahalingam R,Wellish M,Gilden DH

    更新日期:1990-01-01 00:00:00

  • A sensitive and rapid RNA silencing suppressor activity assay based on alfalfa mosaic virus expression vector.

    abstract::Plant viruses express RNA silencing suppressor (RSS) proteins to counteract plant defence mechanisms. Here, we describe a method to assess the RSS activity based on an alfalfa mosaic virus (AMV) RNA 3 expression vector and transgenic Nicotiana tabacum plants that express the P1 and P2 subunits of the AMV replicase (P1...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2019.197733

    authors: Martínez-Pérez M,Navarro JA,Pallás V,Sánchez-Navarro JA

    更新日期:2019-10-15 00:00:00

  • VLPs of Leptopilina boulardi share biogenesis and overall stellate morphology with VLPs of the heterotoma clade.

    abstract::Viruses and virus-like particles (VLPs) of insect parasitoids modify host-parasite interactions. The Drosophila wasp, Leptopilina heterotoma, produce 300 nm spiked VLPs that bind to the host's blood cells via surface projections. L. heterotoma is a generalist wasp that attacks over a dozen Drosophila species. Oviposit...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2011.06.005

    authors: Gueguen G,Rajwani R,Paddibhatla I,Morales J,Govind S

    更新日期:2011-09-01 00:00:00

  • Sequence analysis of hepatitis GB virus C (GBV-C) isolates from 14 patients.

    abstract::In 1995, a new human hepatitis virus belonging to the family Flaviviridae was described and designated hepatitis GBV-C. To investigate variations within the genome of GBV-C and to study the relationship of GBV-C to GBV-A/B or hepatitis C virus (HCV), we established a detection system using reverse transcriptase polyme...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(96)01377-9

    authors: Seipp S,Wahl R,Mueller H,Stremmel W,Theilmann L,Goeser T

    更新日期:1996-12-01 00:00:00

  • Exotic and indigenous viruses infect wild populations and captive collections of temperate terrestrial orchids (Diuris species) in Australia.

    abstract::Four species of Diuris temperate terrestrial orchids from wild and captive populations were tested for the presence of polyadenylated RNA viruses. The genomes of three exotic viruses were determined: two potyviruses, Bean yellow mosaic virus and Ornithogalum mosaic virus, and the polerovirus Turnip yellows virus. The ...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2012.10.003

    authors: Wylie SJ,Li H,Dixon KW,Richards H,Jones MG

    更新日期:2013-01-01 00:00:00

  • Characterization of the structural proteins of hepatitis C virus expressed by an adenovirus recombinant.

    abstract::Human adenoviruses have been used for mammalian expression vectors and recombinant vaccines for heterologous antigens. We constructed and characterized an infectious adenovirus recombinant containing core-E1-E2 genes of hepatitis C virus (HCV). The core protein was produced mainly during the early phase of viral infec...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(98)00043-4

    authors: Seong YR,Lee CH,Im DS

    更新日期:1998-06-01 00:00:00

  • Differential suppression of host cell protein synthesis and mRNA levels in herpes simplex virus-infected endothelial cells.

    abstract::Earlier studies from this laboratory have shown that infection of vascular cells with herpes simplex virus 1 or 2 (HSV-1, HSV-2) results in the differential suppression of extracellular matrix proteins including fibronectin (FN), type IV collagen, thrombospondin (TSP) and Factor VIII von Willebrand protein. The presen...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/0168-1702(91)90047-y

    authors: Brinker JM,Ziaie Z,Kefalides NA

    更新日期:1991-05-01 00:00:00

  • Discovery of Mwinilunga alphavirus: A novel alphavirus in Culex mosquitoes in Zambia.

    abstract::Mosquito-borne alphaviruses are disseminated globally and cause febrile illness in humans and animals. Since the prevalence and diversity of alphaviruses has not been previously investigated in Zambia, reverse transcription PCR was employed as a broad-spectrum approach for the detection of alphaviruses in mosquitoes. ...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2018.04.005

    authors: Torii S,Orba Y,Hang'ombe BM,Mweene AS,Wada Y,Anindita PD,Phongphaew W,Qiu Y,Kajihara M,Mori-Kajihara A,Eto Y,Harima H,Sasaki M,Carr M,Hall WW,Eshita Y,Abe T,Sawa H

    更新日期:2018-05-02 00:00:00

  • Prevalence of multiple subtypes of influenza A virus in Japanese wild raccoons.

    abstract::Raccoons (Procyon lotor), which are not native to Japan, have been suspected to transmit various pathogens by frequent intrusion into agricultural and residential areas. To determine influenza A virus seropositivity in raccoons in Japan, we examined a total of 634 raccoons captured in 19 towns (A-S) from 2009 to 2012....

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2014.05.004

    authors: Yamaguchi E,Sashika M,Fujii K,Kobayashi K,Bui VN,Ogawa H,Imai K

    更新日期:2014-08-30 00:00:00

  • Hepatitis B virus overexpresses suppressor of cytokine signaling-3 (SOCS3) thereby contributing to severity of inflammation in the liver.

    abstract::The mechanism by which hepatitis B virus (HBV) infection causes severe inflammatory liver diseases is multifactorial and related to interactions with cell signaling pathways and the ensuing inflammatory response. Activation of JAK/STAT/SOCS signaling is essential for the induction of cellular antiviral responses, cont...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2009.12.003

    authors: Koeberlein B,zur Hausen A,Bektas N,Zentgraf H,Chin R,Nguyen LT,Kandolf R,Torresi J,Bock CT

    更新日期:2010-03-01 00:00:00

  • Nucleotide sequence of a nucleoside triphosphate phosphohydrolase gene from African swine fever virus.

    abstract::A putative nucleoside triphosphate phosphohydrolase (NTPase) gene of African swine fever virus was identified by using a degenerate oligonucleotide probe derived from the nucleoside triphosphate binding motif, which is highly conserved among viral and cellular NTPases. The probe hybridized with fragments SalI E and Ec...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/0168-1702(93)90016-g

    authors: Freije JM,Laín S,Viñuela E,López-Otín C

    更新日期:1993-10-01 00:00:00

  • Generation of recombinant vaccinia viruses expressing Puumala virus proteins and use in isolating cytotoxic T cells specific for Puumala virus.

    abstract::Puumala (PUU) virus causes a form of hemorrhagic fever with renal syndrome (HFRS), called nephropathia epidemica (NE), in Europe. HFRS is characterized by an increased capillary permeability, which we hypothesize is caused by hyperactivation of the host immune system, especially cellular immune responses. To identify ...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(01)00416-6

    authors: Terajima M,Van Epps HL,Li D,Leporati AM,Juhlin SE,Mustonen J,Vaheri A,Ennis FA

    更新日期:2002-03-20 00:00:00

  • Caspase-mediated cleavage of nucleocapsid protein of a protease-independent porcine epidemic diarrhea virus strain.

    abstract::Porcine epidemic diarrhea virus (PEDV) infection in neonatal piglets can cause up to 100% mortality, resulting in significant economic loss in the swine industry. Like other coronaviruses, PEDV N protein is a nucleocapsid protein and abundantly presents at all stages of infection. Previously, we reported that the N pr...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2020.198026

    authors: Oh C,Kim Y,Chang KO

    更新日期:2020-08-01 00:00:00

  • The Ep152R ORF of African swine fever virus strain Georgia encodes for an essential gene that interacts with host protein BAG6.

    abstract::African swine fever virus (ASFV) is the etiological agent of a contagious and often lethal disease of domestic pigs that has significant economic consequences for the swine industry. The viral genome encodes for more than 150 genes, and only a select few of these genes have been studied in some detail. Here we report ...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2016.07.013

    authors: Borca MV,O'Donnell V,Holinka LG,Rai DK,Sanford B,Alfano M,Carlson J,Azzinaro PA,Alonso C,Gladue DP

    更新日期:2016-09-02 00:00:00

  • Gene expression regulated by gene VI of caulimovirus: transactivation of downstream genes of transcripts by gene VI of peanut chlorotic streak virus in transgenic tobacco.

    abstract::Here we document that the gene VI product of peanut chlorotic streak virus (PClSV), a newly characterized member of the group, transactivates the translation of dicistronic transcripts. Dicistronic expression units have been analyzed both in protoplast transient expression experiments and in transgenic tobacco plants....

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(98)00088-4

    authors: Maiti IB,Richins RD,Shepherd RJ

    更新日期:1998-10-01 00:00:00

  • Analysis of genome segments from six different isolates of bluetongue virus using RNA-RNA hybridisation: a generalised coding assignment for bluetongue viruses.

    abstract::Nucleic acid probes prepared directly from bluetongue virus (BTV) genomic double-stranded RNA (dsRNA) have been used to identify the functionally equivalent genome segments from six distinct isolates of BTV after their separation in both agarose and polyacrylamide gel electrophoresis systems. Variations in the rate, a...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/0168-1702(88)90078-0

    authors: Pedley S,Mohamed ME,Mertens PP

    更新日期:1988-06-01 00:00:00

  • Tick-borne encephalitis virus strains of Western Siberia.

    abstract::Tick-borne encephalitis virus (TBEV) strains were isolated from ticks in Western Siberia for 12 years. Molecular hybridization of the 46 viral RNA with the TBEV cDNA and oligonucleotide probes revealed differences between the Siberian and Far Eastern strains. A comparison of the viral E gene fragment nucleotide sequen...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(00)00174-x

    authors: Bakhvalova VN,Rar VA,Tkachev SE,Matveev VA,Matveev LE,Karavanov AS,Dobrotvorsky AK,Morozova OV

    更新日期:2000-09-01 00:00:00

  • Localized conserved regions of the S RNA gene products of bunyaviruses are revealed by sequence analyses of the Simbu serogroup Aino virus.

    abstract::The complete nucleotide sequence has been determined for the S RNA of Aino virus, a member of the Simbu serogroup (Bunyavirus genus, family Bunyaviridae). The S RNA is 850 nucleotides long (2.76 X 10(5) daltons) and in the viral complementary sequence has a short 5' non-coding region of 34 nucleotides and a more exten...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/0168-1702(84)90034-0

    authors: Akashi H,Gay M,Ihara T,Bishop DH

    更新日期:1984-01-01 00:00:00