Naturally occurring NS3 resistance-associated variants in hepatitis C virus genotype 1: Their relevance for developing countries.

Abstract:

:Hepatitis C virus (HCV) is a major cause of global morbidity and mortality, with an estimated 130-150 million infected individuals worldwide. HCV is a leading cause of chronic liver diseases including cirrhosis and hepatocellular carcinoma. Current treatment options in developing countries involve pegylated interferon-α and ribavirin as dual therapy or in combination with one or more direct-acting antiviral agents (DAA). The emergence of resistance-associated variants (RAVs) after treatment reveals the great variability of this virus leading to a great difficulty in developing effective antiviral strategies. Baseline RAVs detected in DAA treatment-naïve HCV-infected patients could be of great importance for clinical management and outcome prediction. Although the frequency of naturally occurring HCV NS3 protease inhibitor mutations has been addressed in many countries, there are only a few reports on their prevalence in South America. In this study, we investigated the presence of RAVs in the HCV NS3 serine protease region by analysing a cohort of Uruguayan patients with chronic hepatitis C who had not been treated with any DAAs and compare them with the results found for other South American countries. The results of these studies revealed that naturally occurring mutations conferring resistance to NS3 inhibitors exist in a substantial proportion of Uruguayan treatment-naïve patients infected with HCV genotype 1 enrolled in these studies. The identification of these baseline RAVs could be of great importance for patients' management and outcome prediction in developing countries.

journal_name

Virus Res

journal_title

Virus research

authors

Echeverría N,Betancour G,Gámbaro F,Hernández N,López P,Chiodi D,Sánchez A,Boschi S,Fajardo A,Sóñora M,Moratorio G,Cristina J,Moreno P

doi

10.1016/j.virusres.2016.07.008

subject

Has Abstract

pub_date

2016-09-02 00:00:00

pages

140-6

eissn

0168-1702

issn

1872-7492

pii

S0168-1702(16)30438-5

journal_volume

223

pub_type

杂志文章
  • A reverse genetic study of the adaptation of human enterovirus 71 to growth in Chinese hamster ovary cell cultures.

    abstract::We selected Chinese hamster ovary (CHO) cell-adapted strains of human enterovirus 71 (HEV71) belonging to sub-genogroups B5 (HEV71-B5) and C2 (HEV71-C2) by serial passage in CHO cells at a high multiplicity of infection. During the course of CHO cell passage, virus growth improved significantly, with increasing virus ...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2012.02.009

    authors: Zaini Z,Phuektes P,McMinn P

    更新日期:2012-05-01 00:00:00

  • The recombinant nucleocapsid protein of classical swine fever virus can act as a transcriptional regulator.

    abstract::The cDNA of the nucleocapsid (core) protein of classical swine fever virus (CSFV) was generated by reverse transcription-polymerase chain reaction (RT-PCR) and cloned into a eukaryotic expression vector. The effect of the recombinant core protein on the transcriptional regulation of cellular as well as viral promoters...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(97)00132-9

    authors: Liu JJ,Wong ML,Chang TJ

    更新日期:1998-01-01 00:00:00

  • Relationships between serotypes and genotypes of hepatitis B virus: genetic classification of HBV by use of surface genes.

    abstract::Hepatitis B virus (HBV) surface antigen (HBsAg), which is encoded by the HBV S gene, is conventionally classified into 4 serological subtypes, adw, adr, ayw and ayr. To determine the relationship between the HBsAg seroreactivity and the nucleotide sequence diversity of the HBV S gene, the nucleotide sequences of S gen...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(95)00069-0

    authors: Ohba K,Mizokami M,Ohno T,Suzuki K,Orito E,Lau JY,Ina Y,Ikeo K,Gojobori T

    更新日期:1995-11-01 00:00:00

  • Evidence of a major role of GP64 in group I alphabaculovirus evolution.

    abstract::Previous investigations suggest that the divergence of the group I alphabaculoviruses was later than that of the group II alphabaculoviruses, however, there is no quantitative data to support this hypothesis. To examine this theory, the evolutionary rates of the 30 core genes that are conserved among all baculoviruses...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2009.01.015

    authors: Jiang Y,Deng F,Rayner S,Wang H,Hu Z

    更新日期:2009-06-01 00:00:00

  • Some epidemiological approaches to the control of aphid-borne virus diseases in seed potato crops in northern Europe.

    abstract::An account is given of progress during the last 30 years in knowledge of the epidemiology of diseases caused by aphid-borne viruses in seed potato production areas of northern Europe. During this period, Potato leafroll virus (PLRV) and strains of Potato virus Y (PVY(O), PVY(N)) were consistently the most prevalent an...

    journal_title:Virus research

    pub_type: 杂志文章,评审

    doi:10.1016/s0168-1702(00)00186-6

    authors: Robert Y,Woodford JA,Ducray-Bourdin DG

    更新日期:2000-11-01 00:00:00

  • AP-1 and ERK1 but not p38 nor JNK is required for CRPV early protein 2-dependent MMP-9 promoter activation in rabbit epithelial cells.

    abstract::Human papillomaviruses (HPV) are the known cause for a variety of cancers including cervical and epithelial cancers. The cottontail-rabbit papillomavirus (CRPV) serves as a suitable animal model to study the development of these cancers in vivo. We have previously demonstrated that CRPV-induced skin carcinomas express...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2008.09.007

    authors: Mühlen S,Behren A,Iftner T,Plinkert PK,Simon C

    更新日期:2009-01-01 00:00:00

  • Porcine deltacoronavirus induces caspase-dependent apoptosis through activation of the cytochrome c-mediated intrinsic mitochondrial pathway.

    abstract::Porcine deltacoronavirus (PDCoV), a newly discovered enteric coronavirus, is a causative agent of severe clinical diarrhea and intestinal pathological damage in piglets. As a first step toward understanding the effect of PDCoV on host cells, we elucidated mechanisms underlying the process of apoptotic cell death after...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2018.06.008

    authors: Lee YJ,Lee C

    更新日期:2018-07-15 00:00:00

  • A bivalent dendrimeric peptide bearing a T-cell epitope from foot-and-mouth disease virus protein 3A improves humoral response against classical swine fever virus.

    abstract::Three dendrimeric peptides were synthesized in order to evaluate their immunogenicity and their potential protection against classical swine fever virus (CSFV) in domestic pigs. Construct 1, an optimized version of a previously used dendrimer, had four copies of a B-cell epitope derived from CSFV E2 glycoprotein conne...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2017.05.020

    authors: Bohórquez JA,Defaus S,Muñoz-González S,Perez-Simó M,Rosell R,Fraile L,Sobrino F,Andreu D,Ganges L

    更新日期:2017-06-15 00:00:00

  • NF-κB is required for dengue virus NS5-induced RANTES expression.

    abstract::Dengue virus (DENV) infection associates with renal disorders. Patients with dengue hemorrhagic fever and acute kidney injury have a high mortality rate. Increased levels of cytokines may contribute to the pathogenesis of DENV-induced kidney injury. Currently, molecular mechanisms how DENV induces kidney cell injury h...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2014.12.007

    authors: Khunchai S,Junking M,Suttitheptumrong A,Kooptiwut S,Haegeman G,Limjindaporn T,Yenchitsomanus PT

    更新日期:2015-02-02 00:00:00

  • The interaction between KSHV RTA and cellular RBP-Jkappa and their subsequent DNA binding are not sufficient for activation of RBP-Jkappa.

    abstract::Kaposi's sarcoma-associated herpesvirus (KSHV) replication and transcription activator (RTA) is necessary and sufficient for the switch from KSHV latency to lytic replication. RTA activates promoters by several mechanisms. RTA can bind to sequences in viral promoters and activate transcription. In addition, RTA intera...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2007.07.019

    authors: Papugani A,Coleman T,Jones C,Zhang L

    更新日期:2008-01-01 00:00:00

  • Isolation and identification of an enterovirus 77 recovered from a refugee child from Kosovo, and characterization of the complete virus genome.

    abstract::The complete nucleotide sequence of an enterovirus 77 isolate is reported. The virus designated FR/CF496-99 (France/Clermont-Ferrand 496-1999) was recovered from the feces of a 4-year-old child hospitalized for Salmonella gastroenteritis. The virus was identified by a molecular typing assay based on the genomic sequen...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2003.11.006

    authors: Bailly JL,Cardoso MC,Labbé A,Peigue-Lafeuille H

    更新日期:2004-02-01 00:00:00

  • Absence of superinfection exclusion during asynchronous reovirus infections of mouse, monkey, and human cell lines.

    abstract::Reovirus is a gastroenteric virus with a genome that consists of ten segments of double-stranded RNA. The segmented nature of the genome allows for genetic mixing when cells are simultaneously infected with two different viral serotypes. The ability of viral reassortment to take place in asynchronous infections has no...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(98)00023-9

    authors: Keirstead ND,Coombs KM

    更新日期:1998-04-01 00:00:00

  • Molecular epidemiology of rabies in Colombia 1994-2005 based on partial nucleoprotein gene sequences.

    abstract::One hundred and twenty-four rabies viruses (RABV) were isolated from humans and eight species of mammals in Colombia during 1994-2005. To determine the genetic and reservoir-associated diversity cDNA fragments encoding 88 amino acids at the carboxyl terminus of the nucleoprotein were sequenced and used in phylogenetic...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2007.06.008

    authors: Páez A,Velasco-Villa A,Rey G,Rupprecht CE

    更新日期:2007-12-01 00:00:00

  • Comparative full genome analysis revealed E1: A226V shift in 2007 Indian Chikungunya virus isolates.

    abstract::The resurgence of Chikungunya virus (CHIKV) in the form of unprecedented explosive epidemic after a gap of 32 years in India is a point of major public health concern. In 2007 again there was outbreak in Kerala, India, affecting more than 25,000 cases with many reported mortalities. To understand the molecular basis o...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2008.02.004

    authors: Santhosh SR,Dash PK,Parida MM,Khan M,Tiwari M,Lakshmana Rao PV

    更新日期:2008-07-01 00:00:00

  • Molecular characterization of begomoviruses and DNA satellites associated with okra leaf curl disease in Cameroon.

    abstract::Okra leaf curl disease (OLCD) is the most important viral disease of okra in West Africa. In this study, a complex of begomoviruses and associated DNA satellites were identified in symptomatic okra plants from southwestern Cameroon. Sequence analyses showed that two of the plants (Lik1 and Njo5) were infected with a b...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2013.03.010

    authors: Leke WN,Sattar MN,Ngane EB,Ngeve JM,Kvarnheden A,Brown JK

    更新日期:2013-06-01 00:00:00

  • Highly effective inhibition of Akabane virus replication by siRNA genes.

    abstract::Since 2002 there has been a rise in arthrogryposis/hydranencephaly (AGH) incidence in Israel, caused by Akabane (AKA) and, possibly, Aino viruses. To test the ability to control the disease, three siRNA genes targeted to the S genome segment were designed and prepared in the form of siRNA cassettes. For the design all...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2006.02.009

    authors: Levin A,Kutznetova L,Kahana R,Rubinstein-Guini M,Stram Y

    更新日期:2006-09-01 00:00:00

  • The human papillomavirus18 E7 protein inhibits CENP-C binding to α-satellite DNA.

    abstract::Human papillomavirus (HPV) infection leads to aneuploidy, a numerical chromosomal aberration that is caused by dysregulation of chromosomal segregation. We previously found that the E7 proteins of high-risk HPVs, but not of low-risk HPVs, could bind to centromere protein-C (CENP-C). In this study, we first found that ...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2015.04.019

    authors: Yaginuma Y,Yoshimoto M,Eguchi A,Tokuda A,Takahashi S

    更新日期:2015-07-02 00:00:00

  • Development of a mandarin fish Siniperca chuatsi fry cell line suitable for the study of infectious spleen and kidney necrosis virus (ISKNV).

    abstract::Infectious spleen and kidney necrosis virus (ISKNV) is a typical species of the genus Megalocytivirus in the family Iridoviridae. However, until recently, no suitable piscine cell line is stably susceptible to ISKNV. Here, a continuous cell culture derived from the mandarin fish fry (MFF-1) was developed and has been ...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2008.04.004

    authors: Dong C,Weng S,Shi X,Xu X,Shi N,He J

    更新日期:2008-08-01 00:00:00

  • Use of pseudotyped retroviral vectors to analyze the receptor-binding pocket of hemagglutinin from a pathogenic avian influenza A virus (H7 subtype).

    abstract::The hemagglutinin (HA) protein of influenza virus binds to terminal sialic acid residues present on cell surface glycoproteins and glycolipids. The specific amino acids involved in this interaction have been identified for a H3 subtype HA from the human non-pathogenic virus, A/Aichi/2/68, by both crystallographic and ...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(01)00407-5

    authors: Lin AH,Cannon PM

    更新日期:2002-02-26 00:00:00

  • Viruses detected in the caecum contents of healthy pigs representing a new genetic cluster in genogroup II of the genus "Norwalk-like viruses".

    abstract::Viruses of the genus 'Norwalk-like viruses' (NLVs) detected in humans have been genetically classified into two major genetic groups, genogroups I and II (GI and GII), which together are made up of at least 14 genetic subgroups. However, a comparable classification of NLVs in other species remains to be carried out. W...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(02)00107-7

    authors: Sugieda M,Nakajima S

    更新日期:2002-08-01 00:00:00

  • Detection of picobirnaviruses in vervet monkeys (Chlorocebus sabaeus): Molecular characterization of complete genomic segment-2.

    abstract::During 2014-2015, 270 fecal samples were collected from non-diarrheic, captive and wild African green monkeys (AGMs) on the island of St. Kitts, Caribbean region. By RNA-PAGE, picobirnaviruses (PBVs) were detected in sixteen captive AGMs. By RT-PCR and sequencing of partial gene segment-2, PBVs in 15 of these 16 sampl...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2016.12.021

    authors: Gallagher CA,Navarro R,Cruz K,Aung MS,Ng A,Bajak E,Beierschmitt A,Lawrence M,Dore KM,Ketzis J,Malik YS,Kobayashi N,Ghosh S

    更新日期:2017-02-15 00:00:00

  • Prevalence of occult hepatitis B virus infection and Torque teno virus infection and their association with hepatocellular carcinoma in chronic hepatitis C patients.

    abstract:BACKGROUND:The role of occult hepatitis B virus (HBV) infection and Torque teno virus (TTV) infection in the development of hepatocellular carcinoma (HCC) in chronic hepatitis C patients is still uncertain. AIM:The aim of the present study was to investigate the prevalence and significance of OBI and TTV infection, an...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2017.09.022

    authors: Rosa AS,Araujo OC,Savassi-Ribas F,Fernandes CA,Coelho HS,Niel C,Villela-Nogueira CA,Araujo NM

    更新日期:2017-10-15 00:00:00

  • Parainfluenza virus type 5 (PIV-5) morphology revealed by cryo-electron microscopy.

    abstract::The knowledge of parainfluenza type 5 (PIV-5) virion morphology is essentially based on the observation of negatively stained preparations in conventional transmission electron microscopy (CTEM). In this study, the ultrastructure of frozen-hydrated intact PIV-5 was examined by cryo-electron microscopy (cryo-EM). Cryo-...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2008.12.017

    authors: Terrier O,Rolland JP,Rosa-Calatrava M,Lina B,Thomas D,Moules V

    更新日期:2009-06-01 00:00:00

  • Antibody-mediated neutralization of African swine fever virus: myths and facts.

    abstract::Almost all viruses can be neutralized by antibodies. However, there is some controversy about antibody-mediated neutralization of African swine fever virus (ASFV) with sera from convalescent pigs and about the protective relevance of antibodies in experimentally vaccinated pigs. At present, there is no vaccine availab...

    journal_title:Virus research

    pub_type: 杂志文章,评审

    doi:10.1016/j.virusres.2012.10.012

    authors: Escribano JM,Galindo I,Alonso C

    更新日期:2013-04-01 00:00:00

  • Correlation of cellular factors and differential scrapie prion permissiveness in ovine microglia.

    abstract::Prion diseases are fatal neurodegenerative disorders by which the native cellular prion protein (PrPC) is misfolded into an accumulating, disease-associated isoform (PrPD). To improve the understanding of prion pathogenesis and develop effective treatments, it is essential to elucidate factors contributing to cellular...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2017.07.016

    authors: Dinkel KD,Schneider DA,Muñoz-Gutiérrez JF,McElliott VR,Stanton JB

    更新日期:2017-08-15 00:00:00

  • Anti-viral effect of a compound isolated from Liriope platyphylla against hepatitis B virus in vitro.

    abstract::The compound LPRP-Et-97543 was isolated from Liriope platyphylla roots and was observed to have potential anti-viral effects in HepG2.2.15 cells against hepatitis B virus (HBV). The antiviral mode was further clarified, and the HBV-transfected Huh7 cells were used as the platform. During viral gene expression, LPRP-Et...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2014.07.015

    authors: Huang TJ,Tsai YC,Chiang SY,Wang GJ,Kuo YC,Chang YC,Wu YY,Wu YC

    更新日期:2014-11-04 00:00:00

  • Visualization of intracellular pathways of engineered baculovirus in mammalian cells.

    abstract::Baculoviruses are a promising gene delivery vector. They have the ability to express large transgenes in mammalian cells without displaying pathogenicity in humans; however, little is known about their transduction mechanisms in target cells. In this study, we use colocalization and live-cell imaging studies to elucid...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2014.01.006

    authors: Liu Y,Joo KI,Lei Y,Wang P

    更新日期:2014-03-06 00:00:00

  • Human group C rotavirus: completion of the genome sequence and gene coding assignments of a non-cultivatable rotavirus.

    abstract::Genome segments 1 and 2 of human group C rotavirus 'Bristol' strain were sequenced and their gene-protein coding properties assigned. This work completed the genome sequence of a human group C rotavirus (17,910 bp) and allowed the full gene-protein coding assignment of the 11 segments of dsRNA. Gene 1 is 3309 bp in si...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/s0168-1702(01)00442-7

    authors: Chen Z,Lambden PR,Lau J,Caul EO,Clarke IN

    更新日期:2002-02-26 00:00:00

  • Complete nucleotide sequence of the RNA 3 from subgroup II of cucumber mosaic virus (CMV) strain: Trk7.

    abstract::The complete nucleotide sequence (2209 nucleotides) of the RNA 3 of the cucumber mosaic virus strain Trk7 was determined. Trk7-CMV possesses two open reading frames which encode the 3a protein (279 amino acids) and the coat protein (218 amino acids). Sequence analysis proved the earlier biological and serological clas...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/0168-1702(94)90030-2

    authors: Salánki K,Thole V,Balázs E,Burgyán J

    更新日期:1994-03-01 00:00:00

  • Complete genome sequence of a raccoon rabies virus isolate.

    abstract::The entire genome of a mid-Atlantic raccoon strain rabies virus (RRV) isolated in Canada was sequenced; this is the second North American wildlife rabies virus isolate to be fully characterized. The overall organization and length of the genome was similar to that of other lyssaviruses. The nucleotide sequence identit...

    journal_title:Virus research

    pub_type: 杂志文章

    doi:10.1016/j.virusres.2008.04.029

    authors: Szanto AG,Nadin-Davis SA,White BN

    更新日期:2008-09-01 00:00:00