Abstract:
:Different bioinformatics methods illuminate different aspects of protein function, from specific catalytic activities to broad functional categories. Here, a triple-pronged approach to predict function for a domain of unknown function, DUF2086, is applied. Distant homology to characterised enzymes and conservation of key residues suggest an oxygenase function. Modelling indicates that the substrate is most likely a nucleic acid. Finally, genomic context analysis linking DUF2086 to DNA repair, leads to a predicted activity of oxidative demethylation of damaged bases in DNA. The newly assigned activity is sporadically present in phyla not containing near relatives of the similarly active repair protein AlkB.
journal_name
FEBS Lettjournal_title
FEBS lettersauthors
Mello LV,Rigden DJdoi
10.1016/j.febslet.2012.09.023subject
Has Abstractpub_date
2012-11-02 00:00:00pages
3908-13issue
21eissn
0014-5793issn
1873-3468pii
S0014-5793(12)00731-4journal_volume
586pub_type
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