Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen.

Abstract:

:The large tumor antigen (LTag) of simian virus 40, an AAA(+) protein, is a hexameric helicase essential for viral DNA replication in eukaryotic cells. LTag functions as an efficient molecular machine powered by ATP binding and hydrolysis for origin DNA melting and replication fork unwinding. To understand how ATP binding and hydrolysis are coupled to conformational changes, we have determined high-resolution structures ( approximately 1.9 A) of LTag hexamers in distinct nucleotide binding states. The structural differences of LTag in various nucleotide states detail the molecular mechanisms of conformational changes triggered by ATP binding/hydrolysis and reveal a potential mechanism of concerted nucleotide binding and hydrolysis. During these conformational changes, the angles and orientations between domains of a monomer alter, creating an "iris"-like motion in the hexamer. Additionally, six unique beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.

journal_name

Cell

journal_title

Cell

authors

Gai D,Zhao R,Li D,Finkielstein CV,Chen XS

doi

10.1016/j.cell.2004.09.017

subject

Has Abstract

pub_date

2004-10-01 00:00:00

pages

47-60

issue

1

eissn

0092-8674

issn

1097-4172

pii

S0092867404008906

journal_volume

119

pub_type

杂志文章

相关文献

CELL文献大全
  • Travel Less. Make It Worthwhile.

    abstract::Academic travel has a substantial carbon footprint. The ongoing pandemic has propelled the development and adoption of technologies for online delivery of seminars and remote attendance at scientific conferences. This should not lead to the complete elimination of in-person events, but the scientific community must se...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2020.07.026

    authors: Geitmann A

    更新日期:2020-08-20 00:00:00

  • Trans-activation by HIV-1 Tat via a heterologous RNA binding protein.

    abstract::The HIV-1 trans-activator Tat increases levels of viral gene expression and replication. The target for Tat is an RNA stem-loop called TAR, located at the 5' end of all viral transcripts. To study the mechanism of action and map functional domains of Tat, we fused Tat to the coat protein of bacteriophage MS2, an RNA b...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(90)90121-t

    authors: Selby MJ,Peterlin BM

    更新日期:1990-08-24 00:00:00

  • Structural rearrangement of ebola virus VP40 begets multiple functions in the virus life cycle.

    abstract::Proteins, particularly viral proteins, can be multifunctional, but the mechanisms behind multifunctionality are not fully understood. Here, we illustrate through multiple crystal structures, biochemistry, and cellular microscopy that VP40 rearranges into different structures, each with a distinct function required for...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2013.07.015

    authors: Bornholdt ZA,Noda T,Abelson DM,Halfmann P,Wood MR,Kawaoka Y,Saphire EO

    更新日期:2013-08-15 00:00:00

  • A MicroRNA targeting dicer for metastasis control.

    abstract::Although specific microRNAs (miRNAs) can be upregulated in cancer, global miRNA downregulation is a common trait of human malignancies. The mechanisms of this phenomenon and the advantages it affords remain poorly understood. Here we identify a microRNA family, miR-103/107, that attenuates miRNA biosynthesis by target...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2010.05.017

    authors: Martello G,Rosato A,Ferrari F,Manfrin A,Cordenonsi M,Dupont S,Enzo E,Guzzardo V,Rondina M,Spruce T,Parenti AR,Daidone MG,Bicciato S,Piccolo S

    更新日期:2010-06-25 00:00:00

  • The cytoplasmic domain of the ligand ephrinB2 is required for vascular morphogenesis but not cranial neural crest migration.

    abstract::The transmembrane ligand ephrinB2 and its cognate Eph receptor tyrosine kinases are important regulators of vascular morphogenesis. EphrinB2 may have an active signaling role, resulting in bi-directional signal transduction downstream of both ephrinB2 and Eph receptors. To separate the ligand and receptor-like functio...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(01)00191-x

    authors: Adams RH,Diella F,Hennig S,Helmbacher F,Deutsch U,Klein R

    更新日期:2001-01-12 00:00:00

  • Interspecies sex and taste.

    abstract::Different species of fruit flies share habitats but are believed to mate with each other only rarely. In this issue, Fan et al. show that interspecies mating is inhibited by the taste receptor Gr32a (Gustatory receptor 32a) and a neural circuit in which it functions. ...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2013.06.015

    authors: Koh TW,Carlson JR

    更新日期:2013-07-03 00:00:00

  • Prokaryotic Argonautes Function beyond Immunity by Unlinking Replicating Chromosomes.

    abstract::Eukaryotic Argonaute proteins strictly mediate RNA-guided RNA interference. In contrast, prokaryotic Argonautes can utilize DNA guides to target complementary DNA sequences to protect their hosts against invading DNA. In this issue of Cell, Jolly and colleagues demonstrate that Thermus thermophilus Argonaute additiona...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2020.08.037

    authors: Swarts DC

    更新日期:2020-09-17 00:00:00

  • The Implication of Early Chromatin Changes in X Chromosome Inactivation.

    abstract::During development, the precise relationships between transcription and chromatin modifications often remain unclear. We use the X chromosome inactivation (XCI) paradigm to explore the implication of chromatin changes in gene silencing. Using female mouse embryonic stem cells, we initiate XCI by inducing Xist and then...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2018.11.041

    authors: Żylicz JJ,Bousard A,Žumer K,Dossin F,Mohammad E,da Rocha ST,Schwalb B,Syx L,Dingli F,Loew D,Cramer P,Heard E

    更新日期:2019-01-10 00:00:00

  • Identification of a regulated pathway for nuclear pre-mRNA turnover.

    abstract::We have identified a nuclear pathway that rapidly degrades unspliced pre-mRNAs in yeast. This involves 3'-->5' degradation by the exosome complex and 5'-->3' degradation by the exonuclease Rat1p. 3'-->5' degradation is normally the major pathway and is regulated in response to carbon source. Inhibition of pre-mRNA deg...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)00065-9

    authors: Bousquet-Antonelli C,Presutti C,Tollervey D

    更新日期:2000-09-15 00:00:00

  • Biological and molecular heterogeneity of breast cancers correlates with their cancer stem cell content.

    abstract::Pathways that govern stem cell (SC) function are often subverted in cancer. Here, we report the isolation to near purity of human normal mammary SCs (hNMSCs), from cultured mammospheres, on the basis of their ability to retain the lipophilic dye PKH26 as a consequence of their quiescent nature. PKH26-positive cells po...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2009.12.007

    authors: Pece S,Tosoni D,Confalonieri S,Mazzarol G,Vecchi M,Ronzoni S,Bernard L,Viale G,Pelicci PG,Di Fiore PP

    更新日期:2010-01-08 00:00:00

  • Identification of cell cycle-regulated phosphorylation sites on nuclear lamin C.

    abstract::The mechanism by which MPF induces nuclear lamin disassembly and nuclear envelope breakdown during mitosis was studied in a frog egg extract in which the transition from interphase to mitosis can be induced by the addition of MPF. Bacterially expressed human nuclear lamin C, assembled in vitro into filaments, showed i...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(90)90469-u

    authors: Ward GE,Kirschner MW

    更新日期:1990-05-18 00:00:00

  • Malaria virulence genes controlling expression through chromatin modification.

    abstract::Mutually exclusive expression within the var gene family of the malaria parasite Plasmodium falciparum is important for parasite survival and virulence. In this issue of Cell, Duraisingh et al. and Freitas-Junior et al. provide evidence for the role of Sir2-dependent alterations in chromatin structure and changes in s...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2005.03.019

    authors: Deitsch KW

    更新日期:2005-04-08 00:00:00

  • A putative Ras GTPase activating protein acts as a negative regulator of signaling by the Sevenless receptor tyrosine kinase.

    abstract::A Drosophila gene with similarity to the mammalian Ras GTPase activating protein has been isolated in screens for mutations that affect eye development. Inactivation of the locus, Gap1, mimics constitutive activation of the Sevenless receptor tyrosine kinase and eliminates the need for a functional Sevenless protein i...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(92)90073-l

    authors: Gaul U,Mardon G,Rubin GM

    更新日期:1992-03-20 00:00:00

  • A minimal intron length but no specific internal sequence is required for splicing the large rabbit beta-globin intron.

    abstract::We constructed rabbit beta-globin genes with deletions in the large intron, extending from the midpoint toward the 5' or 3' splice sites. Analysis of transcripts in transformed HeLa cells showed that six 5' proximal intron nucleotides allowed normal splicing. Correct splicing at the 3' splice site required 12 or more ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(84)90426-4

    authors: Wieringa B,Hofer E,Weissmann C

    更新日期:1984-07-01 00:00:00

  • In trypanosomes the homolog of the largest subunit of RNA polymerase II is encoded by two genes and has a highly unusual C-terminal domain structure.

    abstract::We have isolated the genes encoding the largest subunit of all three classes of RNA polymerase from Trypanosoma brucei. While the pol II largest subunit is encoded by a single gene in all organisms examined to date, trypanosomes contain two copies of the gene. Both genes are expressed in the procyclic and bloodstream ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(89)90686-7

    authors: Smith JL,Levin JR,Ingles CJ,Agabian N

    更新日期:1989-03-10 00:00:00

  • Point mutation at the ATP binding site of EGF receptor abolishes protein-tyrosine kinase activity and alters cellular routing.

    abstract::Cultured NIH 3T3 cells devoid of endogenous EGF receptors were transfected with cDNA constructs encoding either the human EGF receptor or an EGF receptor mutant in which Lys721, a key residue in the ATP binding site, was replaced with an alanine residue. The mutant receptor was properly processed, and it displayed bot...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(87)90147-4

    authors: Honegger AM,Dull TJ,Felder S,Van Obberghen E,Bellot F,Szapary D,Schmidt A,Ullrich A,Schlessinger J

    更新日期:1987-10-23 00:00:00

  • Sec18p (NSF)-driven release of Sec17p (alpha-SNAP) can precede docking and fusion of yeast vacuoles.

    abstract::S. cerevisiae inherits its vacuole by projecting vacuole-derived membrane vesicles and tubules into the bud, where they fuse to establish the daughter vacuole. This homotypic fusion event can be assayed in vitro. It requires Sec17p and Sec18p, the homologs of the mammalian alpha-SNAP and NSF, which cooperate in multip...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)81084-3

    authors: Mayer A,Wickner W,Haas A

    更新日期:1996-04-05 00:00:00

  • An invitation to the marriage of metagenomics and metabolomics.

    abstract::Metagenomics seeks to characterize the composition of microbial communities, their operations, and their dynamically coevolving relationships with the habitats they occupy without having to culture community members. Uniting metagenomics with analyses of the products of microbial community metabolism (metabolomics) wi...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2008.08.025

    authors: Turnbaugh PJ,Gordon JI

    更新日期:2008-09-05 00:00:00

  • Fc receptor isoforms exhibit distinct abilities for coated pit localization as a result of cytoplasmic domain heterogeneity.

    abstract::Mouse macrophages and lymphocytes express two distinct isoforms of a single class of Fc receptor for IgG. The macrophage isoform (FcRII-B2) is identical to the lymphocyte isoform (FcRII-B1) except for an inframe insertion in the cytoplasmic tail of FcRII-B1 that increases its length from 47 to 94 amino acids. To deter...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(89)90846-5

    authors: Miettinen HM,Rose JK,Mellman I

    更新日期:1989-07-28 00:00:00

  • The many faces of PPARgamma.

    abstract::In an era marked by the increasing prevalence of obesity, diabetes, and cardiovascular disease, the nuclear receptor peroxisome proliferator-activated receptor gamma (PPARgamma) has emerged as a transcriptional regulator of metabolism whose activity can be modulated by direct binding of small molecules. As the master ...

    journal_title:Cell

    pub_type: 杂志文章,评审

    doi:10.1016/j.cell.2005.11.026

    authors: Lehrke M,Lazar MA

    更新日期:2005-12-16 00:00:00

  • Synaptic asymmetry to go.

    abstract::Cell polarity is critical for T lymphocyte movement during their hunt for antigen-bearing cells and for infected target cells. In this issue of Cell, Yeh et al. (2008) now reveal a direct link between T cell polarity and the production of proinflammatory cytokines in mice lacking the class I MHC-restricted T cell-asso...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2008.02.016

    authors: Dustin ML

    更新日期:2008-03-07 00:00:00

  • Conversion of an extracellular Dpp/BMP morphogen gradient into an inverse transcriptional gradient.

    abstract::Morphogen gradients control body pattern by differentially regulating cellular behavior. Here, we analyze the molecular events underlying the primary response to the Dpp/BMP morphogen in Drosophila. Throughout development, Dpp transduction causes the graded transcriptional downregulation of the brinker (brk) gene. We ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(03)00241-1

    authors: Müller B,Hartmann B,Pyrowolakis G,Affolter M,Basler K

    更新日期:2003-04-18 00:00:00

  • A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis.

    abstract::Brassinosteroids (BRs) signal through a plasma membrane-localized receptor kinase to regulate plant growth and development. We showed previously that a novel protein, BES1, accumulates in the nucleus in response to BRs, where it plays a role in BR-regulated gene expression; however, the mechanism by which BES1 regulat...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2004.11.044

    authors: Yin Y,Vafeados D,Tao Y,Yoshida S,Asami T,Chory J

    更新日期:2005-01-28 00:00:00

  • A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments.

    abstract::Bacteria can respond to adverse environmental conditions by drastically reducing or even ceasing metabolic activity. They must then determine that conditions have improved before exiting dormancy, and one indication of such a change is the growth of other bacteria in the local environment. Growing bacteria release mur...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2008.08.039

    authors: Shah IM,Laaberki MH,Popham DL,Dworkin J

    更新日期:2008-10-31 00:00:00

  • The secret life of ACE2 as a receptor for the SARS virus.

    abstract::The membrane-associated carboxypeptidase angiotensin-converting enzyme 2 (ACE2) is an essential regulator of heart function. Now, Li at al. identify and characterize an unexpected second function of ACE2 as a partner of the SARS-CoV spike glycoprotein in mediating virus entry and cell fusion. ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(03)00976-0

    authors: Dimitrov DS

    更新日期:2003-12-12 00:00:00

  • Evidence for a common evolutionary origin of inverted repeat transposons in Drosophila and plants: hobo, Activator, and Tam3.

    abstract::We have sequenced HFL1 from D. melanogaster, the only cloned hobo element shown to have transposase activity. The 2959 bp HFL1 sequence predicts a 2.0 kb open reading frame (ORF1) with substantial amino acid similarity to the transposases of Activator (Ac) from maize (Zea mays) and Tam3 from snapdragon (Antirrhinum ma...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(81)90010-6

    authors: Calvi BR,Hong TJ,Findley SD,Gelbart WM

    更新日期:1991-08-09 00:00:00

  • Cyclic dinucleotides and the innate immune response.

    abstract::Cyclic dinucleotides (CDNs) have been previously recognized as important secondary signaling molecules in bacteria and, more recently, in mammalian cells. In the former case, they represent secondary messengers affecting numerous responses of the prokaryotic cell, whereas in the latter, they act as agonists of the inn...

    journal_title:Cell

    pub_type: 杂志文章,评审

    doi:10.1016/j.cell.2013.08.014

    authors: Danilchanka O,Mekalanos JJ

    更新日期:2013-08-29 00:00:00

  • Glucose Metabolism Linked to Antiviral Responses.

    abstract::Viral infection causes the host to activate an antiviral response that, in part, is dependent on mitochondrial antiviral signaling protein (MAVS) to stimulate type I interferons. Zhang et al. (2019) demonstrate that glucose-generated lactate interacts with MAVS to suppress type I interferons. This study links glucose ...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2019.05.057

    authors: Stoolman JS,Chandel NS

    更新日期:2019-06-27 00:00:00

  • Transcription of the unrearranged mouse C kappa locus: sequence of the initiation region and comparison of activity with a rearranged V kappa-C kappa gene.

    abstract::In cells of the B-lymphocyte lineage, 8.4 kb transcripts are constitutively produced from unrearranged kappa constant region (kappa 0) loci. To help elucidate the molecular basis of this phenomenon, we have determined the nucleotide sequence surrounding the site of transcriptional initiation. The kappa 0 transcripts a...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(81)90401-3

    authors: Van Ness BG,Weigert M,Coleclough C,Mather EL,Kelley DE,Perry RP

    更新日期:1981-12-01 00:00:00

  • brlA is necessary and sufficient to direct conidiophore development in Aspergillus nidulans.

    abstract::The brlA gene of A. nidulans mediates the developmental switch from the indeterminate, apical growth pattern of vegetative cells to the budding growth pattern of conidiophores. brlA encodes a 432 amino acid polypeptide containing two directly repeated motifs resembling the Zn(II) coordination sites first recognized in...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(88)90198-5

    authors: Adams TH,Boylan MT,Timberlake WE

    更新日期:1988-07-29 00:00:00