Abstract:
:The 3' untranslated regions (UTRs) of many plant viral RNAs contain cap-independent translation elements (3' CITEs). Among the 3' CITEs, the Barley yellow dwarf virus (BYDV)-like translation elements (BTEs) form a structurally variable and widely distributed group. Viruses in three genera were known to harbor 3' BTEs, defined by the presence of a 17-nt consensus sequence. To understand BTE function, knowledge of phylogenetically conserved structure is essential, yet the secondary structure has been determined only for the BYDV BTE. Here we show that Rose spring dwarf-associated luteovirus, and two viruses in a fourth genus, Umbravirus, contain functional BTEs, despite deviating in the 17nt consensus sequence. Structure probing by selective 2'-hydroxyl acylation and primer extension (SHAPE) revealed conserved and highly variable structures in BTEs in all four genera. We conclude that BTEs tolerate striking evolutionary plasticity in structure, while retaining the ability to stimulate cap-independent translation.
journal_name
Virologyjournal_title
Virologyauthors
Wang Z,Kraft JJ,Hui AY,Miller WAdoi
10.1016/j.virol.2010.03.025subject
Has Abstractpub_date
2010-06-20 00:00:00pages
177-86issue
1eissn
0042-6822issn
1096-0341pii
S0042-6822(10)00189-3journal_volume
402pub_type
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