A novel fusarivirus isolated from the phytopathogenic fungus Nigrospora oryzae.

Abstract:

:In this study, we report the discovery and molecular characterization of a novel mycovirus, Nigrospora oryzae fusarivirus 1 (NoFV1) isolated from the rice-infecting fungus Nigrospora oryzae. Excluding a poly (A) tail, the genome of the virus is 7004 nucleotide (nt) long containing three putative nonoverlapping open reading frames (ORF1, ORF2, and ORF3). The large ORF1 encodes a polypeptide with a conserved RNA-dependent RNA polymerase (RdRp) domain and a helicase domain that functions for RNA replication. Each of the smaller ORF2 and the smallest ORF3 encodes a putative protein with an unknown function. Amino acid (aa) sequence similarities between the NoFV1-ORF1- and ORF2-encoded proteins and the homologous sequences from other mycoviruses were found. Phylogenetic analysis on the basis of the RdRp and helicase domains showed that NoFV1 is phylogenetically related to viruses in the newly proposed family Fusariviridae. Thus, we suggest that NoFV1 might be a novel member of family Fusariviridae.

journal_name

Virus Genes

journal_title

Virus genes

authors

Zhong J,Zhao SQ,Li GF,Pang XD,Deng XJ,Zhu HJ,Da Gao B,Zhou Q

doi

10.1007/s11262-016-1371-5

subject

Has Abstract

pub_date

2016-12-01 00:00:00

pages

891-895

issue

6

eissn

0920-8569

issn

1572-994X

pii

10.1007/s11262-016-1371-5

journal_volume

52

pub_type

杂志文章
  • Merkel cell polyomavirus in Merkel cell carcinogenesis: small T antigen-mediates c-Jun phosphorylation.

    abstract::Merkel cell carcinoma (MCC) is a highly aggressive neuroendocrine skin cancer associated with the Merkel cell polyomavirus (MCPyV). The MCPyV genome, which is clonally integrated in the majority of MCCs, encodes the regulatory small T (sT) antigen. Previously, reports have established MCPyV sT antigen as a potent onco...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1304-3

    authors: Wu JH,Simonette RA,Nguyen HP,Rady PL,Tyring SK

    更新日期:2016-06-01 00:00:00

  • Barriers to systemic application of virus-based vectors in gene therapy: lessons from adenovirus type 5.

    abstract::Currently, virus-based vectors, namely derivatives of the adenovirus, are frequently used in a wide variety of ex vivo or local gene therapeutic applications. However, the efficacy of virus-based vectors in systemic applications is presently still extremely limited. Complex interactions of the various vector types wit...

    journal_title:Virus genes

    pub_type: 杂志文章,评审

    doi:10.1007/s11262-017-1498-z

    authors: Jönsson F,Kreppel F

    更新日期:2017-10-01 00:00:00

  • Comparison of Schmallenberg virus sequences isolated from mammal host and arthropod vector.

    abstract::Schmallenberg virus (SBV) is the member of Peribunyaviridae family, which comprises pathogens of importance for human and veterinary medicine. The virus is transmitted only between animals and mainly by biting midges of the genus Culicoides. This study was performed in order to determine SBV genetic diversity and eluc...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-018-1607-7

    authors: Kęsik-Maliszewska J,Antos A,Rola J,Larska M

    更新日期:2018-12-01 00:00:00

  • Identification of miR-221 and -222 as important regulators in genotype IV swine hepatitis E virus ORF3-expressing HEK 293 cells.

    abstract::Hepatitis E virus (HEV) has emerged as an important cause of epidemic and sporadic acute viral hepatitis worldwide, which is a major public health challenge. A better understanding of the interaction between the virus and the host cell would be very helpful for its therapy. Swine HEV (SHEV) open reading frame 3 (ORF3)...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-0912-4

    authors: Cheng Y,Du L,Shi Q,Jiao H,Zhang X,Hao Y,Rong H,Zhang J,Jia X,Guo S,Kuang W,Zhang H,Chen C,Wang F

    更新日期:2013-08-01 00:00:00

  • Complete sequence of the RNA genome of pneumonia virus of mice (PVM).

    abstract::Pneumonia virus of mice (PVM) is an enveloped RNA-containing virus of Family Paramyxoviridae. Sequences had been determined previously for a number of PVM genes, although these represented cloned cDNAs rather than consensus sequences. Sequences were not available for the 3' -leader and 5' -trailer regions that constit...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-004-5631-4

    authors: Krempl CD,Lamirande EW,Collins PL

    更新日期:2005-03-01 00:00:00

  • Complete genome sequence of goose parvovirus Y strain isolated from Muscovy ducks in China.

    abstract::A goose parvovirus (GPV) Y strain was isolated from Muscovy ducks in Anhui Province of China. By polymerase chain reaction method, its complete genomic sequence was found to be 5,106 bp in length, consisting of 444-bp inverted terminal repeat, 1,844-bp non-structural protein and 2,199-bp capsid protein (VP) regions. T...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-1001-4

    authors: Liu HM,Wang H,Tian XJ,Zhang S,Zhou XH,Qi KZ,Pan L

    更新日期:2014-02-01 00:00:00

  • Human T-cell leukemia virus type 1 Tax induces an aberrant clustering of the tumor suppressor Scribble through the PDZ domain-binding motif dependent and independent interaction.

    abstract::Human T-cell leukemia virus type 1 (HTLV-1) is a causative agent of adult T-cell leukemia. HTLV-1 Tax1 transforming protein interacts with several PDZ domain-containing proteins, and the interaction is associated with the transforming activities of Tax1 as well as persistent HTLV-1 infection. In this study, we show th...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0259-4

    authors: Okajima M,Takahashi M,Higuchi M,Ohsawa T,Yoshida S,Yoshida Y,Oie M,Tanaka Y,Gejyo F,Fujii M

    更新日期:2008-10-01 00:00:00

  • Pigeon paramyxovirus type 1 variants with polybasic F protein cleavage site but strikingly different pathogenicity.

    abstract::Newcastle disease viruses (NDV) isolated from pigeons (pigeon paramyxovirus type 1; PPMV-1) are mostly of mesogenic pathotype and characterized by a polybasic amino acid sequence motif at the fusion protein (F) cleavage site. This feature also applies to isolate R75/98 from Germany. Its genome consists of 15,192 nucle...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1111-7

    authors: Heiden S,Grund C,Höper D,Mettenleiter TC,Römer-Oberdörfer A

    更新日期:2014-12-01 00:00:00

  • Phylogenetic analysis of partial RNA-polymerase blocks II and III of Rabies virus isolated from the main rabies reservoirs in Brazil.

    abstract::This study describes the results of the sequencing and analysis of segments of Blocks II and III of the RNA polymerase L gene of Rabies virus isolates from different reservoir species of Brazil. The phylogenetic relations of the virus were determined and a variety of species-specific nucleotides were found in the anal...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-012-0743-8

    authors: Carnieli P Jr,de Novaes Oliveira R,de Oliveira Fahl W,de Carvalho Ruthner Batista HB,Scheffer KC,Iamamoto K,Castilho JG

    更新日期:2012-08-01 00:00:00

  • Hepatitis B virus subgenotype A1, occurrence of subgenotype D4, and S gene mutations among voluntary blood donors in Kenya.

    abstract::Kenya is one of the high endemic zones for hepatitis B virus (HBV) infection. The consensuses on prevalence of the HBV genotypes and the existence of their variants have not been fully established in Kenya. Hence, there is a need to further monitor the diversity of HBV. This study aimed to extend the current molecular...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-0976-1

    authors: Kwange SO,Budambula NL,Kiptoo MK,Okoth F,Ochwoto M,Oduor M,Kimotho JH

    更新日期:2013-12-01 00:00:00

  • Persistence of varicella-zoster virus DNA in blood mononuclear cells of patients with varicella or zoster.

    abstract::Varicella-zoster virus (VZV) DNA was detectable by in-situ hybridization in blood mononuclear cells (MNCs) of patients with varicella or zoster for 2-56 days after the onset of a rash. VZV DNA was present in many MNCs from one acute varicella patient 2 days after the onset of the rash and was rarely found in MNCs duri...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00684037

    authors: Gilden DH,Devlin M,Wellish M,Mahalingham R,Huff C,Hayward A,Vafai A

    更新日期:1989-08-01 00:00:00

  • Trends of subtype variation of human immunodeficiency virus type 1 in Zhejiang Province, China.

    abstract::The epidemic characteristics of human immunodeficiency virus type 1 (HIV-1) in Zhejiang Province have not been systematically identified. This study presented a dynamic analysis of HIV-1 subtype variation in Zhejiang from 2004 to 2008, based on the surveillance of molecular epidemiology or drug resistance. CRF01_AE wa...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1136-y

    authors: Yao Y,Xin R,Yang J,Xu Y,Zhang J,Xia Y,Pan X,Guo Z,Song Y

    更新日期:2015-02-01 00:00:00

  • Functional organization of variola major and vaccinia virus genomes.

    abstract::Comparison of the genomic organization of variola and vaccinia viruses has been carried out. Molecular factors of virulence of these viruses is the focus of this review. Possible roles of the genes of soluble cytokine receptors, complement control proteins, factors of virus replication, and dissemination in vivo for v...

    journal_title:Virus genes

    pub_type: 杂志文章,评审

    doi:10.1007/BF01724297

    authors: Shchelkunov SN

    更新日期:1995-01-01 00:00:00

  • Analysis of codon usage in Newcastle disease virus.

    abstract::In this study, the relative synonymous codon usage (RSCU) values, effective number of codon (ENC) values, nucleotide contents, and dinucleotide were used to investigate codon usage pattern of each protein-coding gene and genome among 31 Newcastle disease virus (NDV) isolates. The result shows that the overall extent o...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0574-z

    authors: Wang M,Liu YS,Zhou JH,Chen HT,Ma LN,Ding YZ,Liu WQ,Gu YX,Zhang J

    更新日期:2011-04-01 00:00:00

  • T135I substitution in the nonstructural protein 2C enhances foot-and-mouth disease virus replication.

    abstract::The foot-and-mouth disease virus (FMDV) nonstructural protein 3A plays an important role in viral replication, virulence, and host range. It has been shown that deletions of 10 or 19-20 amino acids in the C-terminal half of 3A attenuate serotype O and C FMDVs, which replicate poorly in bovine cells but normally in por...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-017-1480-9

    authors: Yuan T,Wang H,Li C,Yang D,Zhou G,Yu L

    更新日期:2017-12-01 00:00:00

  • First detection and complete genome sequence of Deformed wing virus in Chilean honeybees.

    abstract::Deformed wing virus (DWV) is one of the most common viruses affecting honey bee specimens. Although the presence of DWV has been reported in many countries, there is no data of the current situation in Chile. In this report, we detected the presence of DWV in apiaries from two different locations in central Chile. Fur...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-012-0791-0

    authors: Barriga GP,Cifuentes-Muñoz N,Rivera PA,Gutierrez M,Shmaryahu A,Valenzuela PD,Engel EA

    更新日期:2012-12-01 00:00:00

  • Genetic analysis of the PB1-F2 gene of equine influenza virus.

    abstract::Amino acid and phylogenetic analysis showed that PB1-F2 of H7N7 and H3N8 equine influenza virus (EIV) evolved into two and nine clades, respectively. The PB1-F2 gene of H7N7 EIV strains isolated after 1973 was identified as being replaced by that of H3N8 EIV circulating simultaneously. All H7N7 EIV strains before 1973...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-0935-x

    authors: Lu G,Guo W,Qi T,Ma J,Zhao S,Tian Z,Pan J,Zhu C,Wang X,Xiang W

    更新日期:2013-10-01 00:00:00

  • Computer simulations to predict the availability of peptides with known HLA class I motifs generated by proteolysis of dengue fever virus (DFV) type 1 structural and nonstructural proteins in infected cells.

    abstract::Cytotoxic T cells that recognize dengue fever viral (DFV) peptides were reported. To predict the cleavage pattern of DFV proteins by cytoplasmic proteasomes into nonapeptides with motifs fitting known HLA class I molecules, the computer program "Findpatterns" was used. In this study the combined amino acid motifs for ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01701808

    authors: Becker Y

    更新日期:1995-01-01 00:00:00

  • Nucleotide sequence analysis of rotavirus gene 11 from two tissue culture-adapted ATCC strains, RRV and Wa.

    abstract::We report here nucleotide sequence and characterization of gene 11 from two tissue culture-adapted ATCC rhesus (RRV) and human (Wa) strains of rotavirus. Gene 11 sequence encodes a nonstructural protein, NSP5 and also encodes NSP6, from an out of phase open reading frame. Sequence of RRV(ATCC) gene 11 represents the f...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1012577407824

    authors: Mohan KV,Atreya CD

    更新日期:2001-12-01 00:00:00

  • Genome characterization of a bovine papillomavirus type 5 from cattle in the Amazon region, Brazil.

    abstract::Papillomaviruses are small and complex viruses with circular DNA genome that belongs to the Papillomavirus family, which comprises at least 39 genera. The bovine papillomavirus (BPV) causes an infectious disease that is characterized by chronic and proliferative benign tumors that affect cattle worldwide. In the prese...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1406-y

    authors: da Silva FR,Daudt C,Cibulski SP,Weber MN,Varela AP,Mayer FQ,Roehe PM,Canal CW

    更新日期:2017-02-01 00:00:00

  • Complete nucleotide sequence, genome organization and phylogenic analysis of the canine calicivirus.

    abstract::The complete genomic sequence of canine calicivirus (CaCV) isolated from feces of a dog with diarrhea was determined. The CaCV genome, a positive-sense single-stranded RNA, contained 8513 nucleotides excluding the poly(A) tail and was longer than that of any other calicivirus strain with a completely known sequence. T...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1020174225622

    authors: Matsuura Y,Tohya Y,Nakamura K,Shimojima M,Roerink F,Mochizuki M,Takase K,Akashi H,Sugimura T

    更新日期:2002-01-01 00:00:00

  • Prevalence and genotyping of group 3 torque teno viruses detected in health care workers in Hungary.

    abstract::Torque teno viruses (TTVs) are classified into the Anellovirus genus of the Circoviridae family. In addition to TTV isolates, TTV genogroup 3 also includes the 8 virus strains known as SENV-A to H. In this study, the prevalence of TTV group 3 viruses and that of SENV-D and H in particular were determined among the sta...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0369-7

    authors: Dencs A,Hettmann A,Szomor KN,Kis Z,Takács M

    更新日期:2009-08-01 00:00:00

  • Capsid protein gene variation among feline calicivirus isolates.

    abstract::We amplified the capsid protein gene fragments of 30 Japanese isolates of feline calicivirus (FCV), including the C, D, and E regions, by reverse transcription-polymerase chain reaction (RT-PCR), followed by direct sequencing. Alignment of the predicted amino acid sequences, together with other published sequences fro...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1011892120875

    authors: Horimoto T,Takeda Y,Iwatsuki-Horimoto K,Sugii S,Tajima T

    更新日期:2001-01-01 00:00:00

  • The evolution of small DNA viruses of eukaryotes: past and present considerations.

    abstract::Historically, viral evolution has often been considered from the perspective of the ability of the virus to maintain viral pathogenic fitness by causing disease. A predator-prey model has been successfully applied to explain genetically variable quasi-species of viruses, such as influenza virus and human immunodeficie...

    journal_title:Virus genes

    pub_type: 杂志文章,评审

    doi:10.1007/BF01728663

    authors: Shadan FF,Villarreal LP

    更新日期:1995-01-01 00:00:00

  • Genetic characterization of highly pathogenic H5N1 avian influenza viruses isolated from poultry farms in Egypt.

    abstract::Twenty-four avian influenza viruses were collected from poultry farms in three different governorates in Egypt during the years 2006-2009 and genetically characterized. All the isolates were confirmed to be type A and subtype H5 influenza virus by chromatographic strip test and hemagglutination inhibition assay. The s...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0633-5

    authors: Eladl AE,El-Azm KI,Ismail AE,Ali A,Saif YM,Lee CW

    更新日期:2011-10-01 00:00:00

  • Sequence of Echinochloa hoja blanca tenuivirus RNA-4.

    abstract::The sequence is presented of RNA-4 of Echinochloa hoja blanca tenuivirus (EHBV), one of two tenuiviruses associated with rice cultivation in Latin America (together with rice hoja blanca virus; RHBV). Analysis of the sequence shows that the coding regions of EHBV RNA-4 are closely related to those of RHBV RNA-4. Howev...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00576979

    authors: de Miranda JR,Muñoz M,Wu R,Espinoza AM

    更新日期:1996-01-01 00:00:00

  • Unique evolution characteristics of the envelope protein of EIAV(LN₄₀), a virulent strain of equine infectious anemia virus.

    abstract::The Chinese equine infectious anemia virus (EIAV) virulent strain EIAV(LN40) is derived from a naturally occurring virus by continuously passing in horses for 16 generations. Its genome sequence is 23% different from that of the American strains or the Japanese strains, and the variation of envelope gp90 surface unit ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-010-0563-7

    authors: Wang X,Wang S,Lin Y,Jiang C,Ma J,Zhao L,Lv X,Wang F,Shen R,Zhou J

    更新日期:2011-04-01 00:00:00

  • Tumors in mice transgenic for the envelope protein of Jaagsiekte sheep retrovirus.

    abstract::Jaagsiekte sheep retrovirus (JSRV) is the causative agent of ovine pulmonary adenocarcinoma (OPA), a contagious lung cancer in sheep. Previous studies have shown that the JSRV envelope protein (Env) functions as an oncogene, in that it can morphologically transform rodent fibroblast and epithelial cell lines. To obtai...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-006-0031-6

    authors: Dakessian RM,Inoshima Y,Fan H

    更新日期:2007-08-01 00:00:00

  • Orf virus (ORFV) ANK-1 protein mitochondrial localization is mediated by ankyrin repeat motifs.

    abstract::Orf virus (ORFV) strain D1701-V, a Parapoxvirus belonging to the family Poxviridae, became attractive as a novel virus vector system that we successfully used for the generation of recombinant vaccines. Therefore, the identification of viral genes involved in host tropisms or immune modulation is of great interest, as...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1069-5

    authors: Lacek K,Bauer B,Bieńkowska-Szewczyk K,Rziha HJ

    更新日期:2014-08-01 00:00:00

  • Binding of cellular proteins to the leader RNA of equine arteritis virus.

    abstract::The genome of equine arteritis virus (EAV) produces a 3' coterminal-nested set of six subgenomic (sg) viral RNAs during virus replication cycle, and each set possesses a common leader sequence of 206 nucleotides (nt) in length derived from the 5' end of the viral genome. Given the presence of the leader region within ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-004-4589-6

    authors: Archambault D,St-Louis MC,Martin S

    更新日期:2005-01-01 00:00:00