Complete genome sequence of goose parvovirus Y strain isolated from Muscovy ducks in China.

Abstract:

:A goose parvovirus (GPV) Y strain was isolated from Muscovy ducks in Anhui Province of China. By polymerase chain reaction method, its complete genomic sequence was found to be 5,106 bp in length, consisting of 444-bp inverted terminal repeat, 1,844-bp non-structural protein and 2,199-bp capsid protein (VP) regions. Then its sequence was aligned with the sequences of GPV and Muscovy duck parvovirus published in the GenBank using the neighbor-joining method. The phylogenetic analyses based on the VP3 gene sequences revealed that the GPV Y strain along with those from Taiwan belonged to the subgroup IIb, while other GPV strains from Muscovy ducks belonged to the subgroup Ib and most of other GPV strains isolated in China mainland were clustered in the subgroup IIa. The absence of the deduced 703-705NRT glycosylation site in VP region may explain the host specificity of the GPV Y strain. The complete genomic sequence of the GPV Y strain from Muscovy ducks will help to understand the molecular and evolutionary characteristics of GPV.

journal_name

Virus Genes

journal_title

Virus genes

authors

Liu HM,Wang H,Tian XJ,Zhang S,Zhou XH,Qi KZ,Pan L

doi

10.1007/s11262-013-1001-4

subject

Has Abstract

pub_date

2014-02-01 00:00:00

pages

199-202

issue

1

eissn

0920-8569

issn

1572-994X

journal_volume

48

pub_type

杂志文章
  • Evolution of surface and nonstructural-1 genes of influenza B viruses isolated in the Province of Québec, Canada, during the 1998-2001 period.

    abstract::After 2 minor winter seasons, influenza B viruses were predominantly isolated in the Province of Quebec, Canada, during the 2000-2001 season representing 74% of laboratory-confirmed influenza viruses. We performed an antigenic study of the hemagglutinin (HA) protein and a molecular characterization of the HA1 region, ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1025768308631

    authors: Abed Y,Coulthart MB,Li Y,Boivin G

    更新日期:2003-10-01 00:00:00

  • Comparative analysis of the granulin regions of the Phthorimaea operculella and Spodoptera littoralis granuloviruses.

    abstract::The nucleotide sequence of two cloned restriction fragments encompassing the granulin genes from the granuloviruses of the potato tuber moth, Phthorimaea operculella, PhopGV, and the Egyptian cotton leaf worm, Spodoptera littoralis, SpliGV, have been determined. Although both viruses are able to infect the same Ph. op...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1008179228236

    authors: Taha A,Nour-El-Din A,Croizier L,Ferber ML,Croizier G

    更新日期:2000-10-01 00:00:00

  • Immunization with combined HSV-2 glycoproteins B2 : D2 gene DNAs: protection against lethal intravaginal challenges in mice.

    abstract::The immunity of a combined DNA vaccine of HSV-2 glycoproteins B2 (gB2) and D2 (gD2) genes in comparison to individual vaccines was studied with regard to protecting against the HSV infection. Two recombinant DNA vaccines of the pHS2-gB2 or pHS2-gD2 were constructed and formulated. The neutralizing antibody titers appe...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1020113902834

    authors: Lee HH,Cha SC,Jang DJ,Lee JK,Choo DW,Kim YS,Uh HS,Kim SY

    更新日期:2002-10-01 00:00:00

  • Detection and genetic characterization of porcine pegivirus from pigs in China.

    abstract::Porcine pegiviruses (PPgV) have been first discovered in serum samples from domestic pigs in Germany in 2016 and then in the USA in 2018. To date, there is no documentation with respect to the presence of PPgVs in domestic pigs in China. Herein, we attempted to determine the presence and prevalence of PPgV in China an...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-018-1624-6

    authors: Lei D,Ye Y,Lin K,Zhang F,Huang D,Li K,Yuan W,Wu Q,Ding Z,Wang L,Song D,Tang Y

    更新日期:2019-04-01 00:00:00

  • Sequences of terminal non-coding regions from four dengue-2 viruses isolated from patients exhibiting different disease severities.

    abstract::We have determined the 5' and 3' non-coding regions (NCR) of four dengue-2 viruses isolated from dengue patients with different clinical severities in Nakhon Phanom, Northeastern Thailand in 1993. The results were compared to prototype dengue-2 strains and were found to have highest homology with the New Guinea C stra...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1007914520454

    authors: Mangada MN,Igarashi A

    更新日期:1997-01-01 00:00:00

  • Orf virus (ORFV) ANK-1 protein mitochondrial localization is mediated by ankyrin repeat motifs.

    abstract::Orf virus (ORFV) strain D1701-V, a Parapoxvirus belonging to the family Poxviridae, became attractive as a novel virus vector system that we successfully used for the generation of recombinant vaccines. Therefore, the identification of viral genes involved in host tropisms or immune modulation is of great interest, as...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1069-5

    authors: Lacek K,Bauer B,Bieńkowska-Szewczyk K,Rziha HJ

    更新日期:2014-08-01 00:00:00

  • Genetic typing of classical swine fever viruses from Lao PDR by analysis of the 5' non-coding region.

    abstract::The 5' non-coding region (5'-NCR) of 27 classical swine fever virus (CSFV) isolates from Lao People's Democratic Republic (Lao PDR) during 1997 and 1999 were amplified by RT-PCR. A 150-bp region of the 5'-NCR amplicons was analysed and compared with reference CSFV of European and Asian origin and a phylogenetic dendro...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-005-3253-0

    authors: Blacksell SD,Khounsy S,Boyle DB,Gleeson LJ,Westbury HA,Mackenzie JS

    更新日期:2005-12-01 00:00:00

  • Phylogenetic analysis of NS5B gene of classical swine fever virus isolates indicates plausible Chinese origin of Indian subgroup 2.2 viruses.

    abstract::Twenty-three CSFV isolates recovered from field outbreaks in various parts of India during 2006-2009 were used for genetic analysis in the NS5B region (409 nts). Seventeen of these were studied earlier [16] in the 5'UTR region. Phylogenetic analysis indicated the continued dominance of subgroup 1.1 strains in the coun...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0572-1

    authors: Patil SS,Hemadri D,Veeresh H,Sreekala K,Gajendragad MR,Prabhudas K

    更新日期:2012-02-01 00:00:00

  • Construction and immune response characterization of a recombinant pseudorabies virus co-expressing capsid precursor protein (P1) and a multiepitope peptide of foot-and-mouth disease virus in swine.

    abstract::Foot-and-mouth disease (FMD) is the most contagious and devastating disease of livestock. Our previous studies demonstrated that TK(-)/gG(-)/P1(+), a recombinant expressing the FMDV capsid precursor protein (P1) based on attenuated pseudorabies virus (PRV) TK(-)/gG(-), could be used as a recombinant vaccine to protect...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0204-6

    authors: He Y,Qian P,Zhang K,Yao Q,Wang D,Xu Z,Wu B,Jin M,Xiao S,Chen H

    更新日期:2008-04-01 00:00:00

  • Genetic characterization of a rare H12N3 avian influenza virus isolated from a green-winged teal in Japan.

    abstract::This study reports on the genetic characterization of an avian influenza virus, subtype H12N3, isolated from an Eurasian green-winged teal (Anas crecca) in Japan in 2009. The entire genome sequence of the isolate was analyzed, and phylogenetic analyses were conducted to characterize the evolutionary history of the iso...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1162-9

    authors: Bui VN,Ogawa H,Hussein IT,Hill NJ,Trinh DQ,AboElkhair M,Sultan S,Ma E,Saito K,Watanabe Y,Runstadler JA,Imai K

    更新日期:2015-04-01 00:00:00

  • Sequence analysis of the variable VP2 gene of infectious bursal disease viruses passaged in Vero cells.

    abstract::Korean field infectious bursal disease viruses (IBDVs) were isolated from IBDV suspected commercial chickens. A previous study revealed that these IBDV field isolates were virulent or very virulent IBDVs. The isolates were passaged three times in the chorioallantoic membrane of specific-pathogen-free embryonated chick...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/b:viru.0000025776.52661.b0

    authors: Kwon HM,Kim SJ

    更新日期:2004-04-01 00:00:00

  • Analysis of codon usage in Newcastle disease virus.

    abstract::In this study, the relative synonymous codon usage (RSCU) values, effective number of codon (ENC) values, nucleotide contents, and dinucleotide were used to investigate codon usage pattern of each protein-coding gene and genome among 31 Newcastle disease virus (NDV) isolates. The result shows that the overall extent o...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0574-z

    authors: Wang M,Liu YS,Zhou JH,Chen HT,Ma LN,Ding YZ,Liu WQ,Gu YX,Zhang J

    更新日期:2011-04-01 00:00:00

  • Phylogenetic analysis of hemagglutinin and neuraminidase genes of H9N2 viruses isolated from migratory ducks.

    abstract::Genetic analysis indicated that the pandemic influenza strains derived from wild aquatic birds harbor viruses of 15 hemagglutinin (HA) and 9 neuraminidase (NA) antigenic subtypes. Surveillance studies have shown that H9N2 subtype viruses are worldwide in domestic poultry and could infect mammalian species, including h...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1026304117797

    authors: Liu JH,Okazaki K,Shi WM,Kida H

    更新日期:2003-12-01 00:00:00

  • Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity.

    abstract::The spontaneous host-range mutants 812F1 and K1/420 are derived from polyvalent phage 812 that is almost identical to phage K, belonging to family Myoviridae and genus Kayvirus. Phage K1/420 is used for the phage therapy of staphylococcal infections. Endolysin of these mutants designated LysF1, consisting of an N-term...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-017-1507-2

    authors: Benešík M,Nováček J,Janda L,Dopitová R,Pernisová M,Melková K,Tišáková L,Doškař J,Žídek L,Hejátko J,Pantůček R

    更新日期:2018-02-01 00:00:00

  • Complete genomic characterization of a porcine reproductive and respiratory syndrome virus isolate in Xinjiang province of China.

    abstract::Porcine reproductive and respiratory syndrome (PRRS) is a swine disease of major economic importance that causes reproductive and respiratory problems in pigs. In the present study, one strain of porcine reproductive and respiratory syndrome virus (PRRSV) was isolated in Xinjiang province, Northwest China, designated ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1122-4

    authors: Xia J,Chen S,Huang J,Ma W,Du W,Yang X,Liu Y,Yan G

    更新日期:2015-02-01 00:00:00

  • Inhibiting replication of begomoviruses using artificial zinc finger nucleases that target viral-conserved nucleotide motif.

    abstract::Geminiviridae consists of a large group of single-stranded DNA viruses that cause tremendous losses worldwide. Frequent mixed infection and high rates of recombination and mutation allow them to adapt rapidly to new hosts and overcome hosts' resistances. Therefore, an effective strategy able to confer plants with resi...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1041-4

    authors: Chen W,Qian Y,Wu X,Sun Y,Wu X,Cheng X

    更新日期:2014-06-01 00:00:00

  • Effects of mutations within the SV40 large T antigen ATPase/p53 binding domain on viral replication and transformation.

    abstract::The simian virus 40 (SV40) large T antigen is a 708 amino-acid protein possessing multiple biochemical activities that play distinct roles in productive infection or virus-induced cell transformation. The carboxy-terminal portion of T antigen includes a domain that carries the nucleotide binding and ATPase activities ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1007941622680

    authors: Peden KW,Srinivasan A,Vartikar JV,Pipas JM

    更新日期:1998-01-01 00:00:00

  • Emergence of rabbit haemorrhagic disease virus 2 in the archipelago of Madeira, Portugal (2016-2017).

    abstract::We report the detection of rabbit haemorrhagic disease virus 2 (RHDV2) in the Madeira archipelago, Portugal. Viral circulation was confirmed by RT-qPCR and vp60 sequencing. Epidemiological data revealed the outbreak initiated in October 2016 in Porto Santo affecting wild and domestic rabbits. It was then detected thre...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-017-1483-6

    authors: Carvalho CL,Silva S,Gouveia P,Costa M,Duarte EL,Henriques AM,Barros SS,Luís T,Ramos F,Fagulha T,Fevereiro M,Duarte MD

    更新日期:2017-12-01 00:00:00

  • Molecular characterization of a new Tospovirus infecting soybean.

    abstract::A new, widespread disease was recently observed in soybean in the United States. The disease, named Soybean vein necrosis, is manifested by intraveinal chlorosis and necrosis, and has been found in almost all of the 50 fields visited over a period of 3 years in the midwest and midsouth part of the United States. A vir...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0621-9

    authors: Zhou J,Kantartzi SK,Wen RH,Newman M,Hajimorad MR,Rupe JC,Tzanetakis IE

    更新日期:2011-10-01 00:00:00

  • Rapid detection of highly pathogenic porcine reproductive and respiratory syndrome virus by a fluorescent probe-based isothermal recombinase polymerase amplification assay.

    abstract::A novel fluorescent probe-based real-time reverse transcription recombinase polymerase amplification (real-time RT-RPA) assay was developed for rapid detection of highly pathogenic type 2 porcine reproductive and respiratory syndrome virus (HP-PRRSV). The sensitivity analysis showed that the detection limit of RPA was...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1378-y

    authors: Yang Y,Qin X,Sun Y,Chen T,Zhang Z

    更新日期:2016-12-01 00:00:00

  • Predicted stem-loop structures and variation in nucleotide sequence of 3' noncoding regions among animal calicivirus genomes.

    abstract::Caliciviruses are nonenveloped with a polyadenylated genome of approximately 7.6 kb and a single capsid protein. The "RNA Fold" computer program was used to analyze 3'-terminal noncoding sequences of five feline calicivirus (FCV), rabbit hemorrhagic disease virus (RHDV), and two San Miguel sea lion virus (SMSV) isolat...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01704518

    authors: Seal BS,Neill JD,Ridpath JF

    更新日期:1994-07-01 00:00:00

  • The genome of Beet cryptic virus 1 shows high homology to certain cryptoviruses present in phylogenetically distant hosts.

    abstract:UNLABELLED:This study determined the complete nucleotide sequence of Beet cryptic virus 1 (BCV1). As expected by analogy to previously sequenced alphacryptoviruses, dsRNA1 (2008 bp) encodes a 72.5-kDa protein containing sequence motifs characteristic for RNA-dependent RNA polymerases (RdRp). In addition to the full-len...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0432-4

    authors: Szego A,Enünlü N,Deshmukh SD,Veliceasa D,Hunyadi-Gulyás E,Kühne T,Ilyés P,Potyondi L,Medzihradszky K,Lukács N

    更新日期:2010-04-01 00:00:00

  • Genetic diversity and molecular characterization of enteroviruses from sewage-polluted urban and rural rivers in the Philippines.

    abstract::Despite the vast distribution and expansive diversity of enteroviruses reported globally, indicators defining a complete view of the epidemiology of enteroviruses in tropical countries such as the Philippines are yet to be established. Detection of enteroviruses in the environment has been one of the markers of circul...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-012-0776-z

    authors: Apostol LN,Imagawa T,Suzuki A,Masago Y,Lupisan S,Olveda R,Saito M,Omura T,Oshitani H

    更新日期:2012-10-01 00:00:00

  • The complete genomic sequence of Tobacco vein banding mosaic virus and its similarities with other potyviruses.

    abstract::The complete genomic sequence of an isolate of Tobacco vein banding mosaic virus (TVBMV-YND) from Yunnan, China was determined by sequencing overlapping cDNA fragments obtained by RT-PCR with degenerate and/or specific primers. The genome is composed of 9,570 nucleotides (nt) excluding the 3'-terminal poly (A) tail an...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-007-0135-7

    authors: Yu XQ,Lan YF,Wang HY,Liu JL,Zhu XP,Valkonen JP,Li XD

    更新日期:2007-12-01 00:00:00

  • Watermelon chlorotic stunt virus (WmCSV): a serious disease threatening watermelon production in Jordan.

    abstract::The incidence of watermelon chlorotic stunt disease and the molecular characterization of the Jordanian isolate of Watermelon chlorotic stunt virus (WmCSV-[JO]) are described in this study. Symptomatic leaf samples obtained from watermelon (Citrullus lanatus Thunb.), melon (Cucumis melo L.), squash (Cucurbita pepo), c...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0594-8

    authors: Al-Musa A,Anfoka G,Al-Abdulat A,Misbeh S,Haj Ahmed F,Otri I

    更新日期:2011-08-01 00:00:00

  • Molecular cloning and characterization of retrovirus-like intracisternal type A particle genes (IAP) present in the Chinese hamster genome.

    abstract::Endogenous retrovirus-like sequences that are homologous to the multigenic murine and Syrian hamster intracisternal type A particle (IAP) genes can be detected in very few copies in the Chinese hamster (CH) genome. They were cloned from a CHO gene library and two recombinants, harboring the major IAP-like DNA genes ch...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00570029

    authors: Servenay M,Kupiec JJ,Peries J,Emanoil-Ravier R

    更新日期:1990-12-01 00:00:00

  • Diversifying evolution of highly pathogenic H5N1 avian influenza virus in Egypt from 2006 to 2011.

    abstract::An evolutionary analysis was conducted of 354 hemagglutinin (HA) and 208 neuraminidase (NA) genes, including newly generated sequences of 5 HA and 30 NA, of Egyptian H5N1 clade 2.2.1 viruses isolated from poultry and humans. Five distinct phylogenetically distinguishable clusters arose from a monophyletic origin since...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-012-0758-1

    authors: Abdelwhab EM,Arafa AS,Stech J,Grund C,Stech O,Graeber-Gerberding M,Beer M,Hassan MK,Aly MM,Harder TC,Hafez HM

    更新日期:2012-08-01 00:00:00

  • Genomic characterization of Molluscum contagiosum virus type 1: identification of the repetitive DNA sequences in the viral genome.

    abstract::The genomes (188 kbp) of the prototype Molluscum contagiosum virus type 1 (MCV-1) and a variant strain (MCV-1v) were characterized by construction of the physical maps of the viral DNA for the restriction enzymes BamHI, ClaI, EcoRI, and HindIII using a defined gene library harboring the DNA sequences of the MCV-1 geno...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00125128

    authors: Bugert J,Rösen-Wolff A,Darai G

    更新日期:1989-11-01 00:00:00

  • Endogenous retroviruses in the human genome--a point of view.

    abstract::The search for retroviruses in human cancer cells has advanced with the discoveries of the retroviral reverse transcriptase, DNA hybridization and sequencing techniques, and polymerase chain reaction (PCR) technology. Each technological advancement has led to a better refinement and a better understanding of latent en...

    journal_title:Virus genes

    pub_type: 历史文章,杂志文章

    doi:10.1007/BF01702877

    authors: Becker Y

    更新日期:1995-02-01 00:00:00

  • The genome of phiAsp2, an actinoplanes infecting phage.

    abstract::The first genome of a virus infecting a representative of the eubacterial genus Actinoplanes is presented. Phage phiAsp2 has a circularly permutated chromosome that consists of 58,638 bp; its G/C-bias of 70.39% resembles the hosts G + C-content (71-73% within the genus). A total of 76 open reading frames (orfs) were i...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/B:VIRU.0000032795.17713.6c

    authors: Jarling M,Bartkowiak K,Pape H,Meinhardt F

    更新日期:2004-08-01 00:00:00