New genotypes of TT virus (TTV) and a genotyping assay based on restriction fragment length polymorphism.

Abstract:

:A phylogenetic analysis, using the open reading frame I sequence of 93 TT viruses (TTV) obtained from various geographical areas, indicated that the virus could be classified into six different genotypes including three hitherto unreported genotypes. The high reliability of the six clusters was confirmed by bootstrap analysis. On the basis of these sequence data, a new simple genotyping assay based on a restriction fragment length polymorphism of TTV was developed. Using the enzymes NdeI and PstI, followed by cleavage with NlaIII or MseI, it was possible to distinguish between the six TTV genotypes. This system will provide the framework for future detailed epidemiological and clinical investigations.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Tanaka Y,Mizokami M,Orito E,Ohno T,Nakano T,Kato T,Kato H,Mukaide M,Park YM,Kim BS,Ueda R

doi

10.1016/s0014-5793(98)01231-9

subject

Has Abstract

pub_date

1998-10-23 00:00:00

pages

201-6

issue

3

eissn

0014-5793

issn

1873-3468

pii

S0014-5793(98)01231-9

journal_volume

437

pub_type

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