A simple program to calculate codon bias index.

Abstract:

:A computer program (PCBI) was developed to quickly calculate codon bias index (CBI). PCBI can analyze a gene containing introns. The 22 preferred codons defined from Saccharomyces cerevisiae were used in PCBI as the standard to measure the CBI values. However, users can modify the preferred codons to suit each organism. The data PCBI provides include DNA sequence of open reading frame without introns, amino acid sequence of gene product, a table of amino acid composition, a table of codon usage and (G + C) content, parameters for calculating CBI, and the value of CBI. PCBI runs on a DOS or Windows environment, but results can be saved in ASCII text format.

journal_name

Mol Biotechnol

journal_title

Molecular biotechnology

authors

Wang TT,Cheng WC,Lee BH

doi

10.1007/BF02760858

subject

Has Abstract

pub_date

1998-10-01 00:00:00

pages

103-6

issue

2

eissn

1073-6085

issn

1559-0305

journal_volume

10

pub_type

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