Interactions of in vitro selected fluorogenic peptide aptamers with calmodulin.

Abstract:

OBJECTIVES:We examined the importance of aptamer usage under the same condition as the selection process by employing the previously selected aptamers for calmodulin (CaM) which includes a non-natural fluorogenic amino acid, 7-nitro-2,1,3-benzoxadiazole. RESULTS:We added five amino acids at the N-terminus which was employed for the selection and then we tested the affinity and selectivity for CaM binding. Surface plasmon resonance and fluorescence measurements showed that the additional amino acids for one of the aptamers drastically improved binding affinity to CaM, indicating the importance of aptamer use under the same conditions as the selection process. Such drastic improvement in affinity was not observed for the sequence which had been reported previously. Nuclear magnetic resonance data identified that the primary binding site is located in a C-terminal of CaM and the additional residues enhance interactions with CaM. CONCLUSIONS:We found that the addition of the common sequence, which was employed for ribosome display, makes the affinity of a selected peptide as strong as the previously reported peptide.

journal_name

Biotechnol Lett

journal_title

Biotechnology letters

authors

Manandhar Y,Wang W,Inoue J,Hayashi N,Uzawa T,Ito Y,Aigaki T,Ito Y

doi

10.1007/s10529-016-2257-2

subject

Has Abstract

pub_date

2017-03-01 00:00:00

pages

375-382

issue

3

eissn

0141-5492

issn

1573-6776

pii

10.1007/s10529-016-2257-2

journal_volume

39

pub_type

杂志文章
  • In vivo delivery of a multiepitope peptide and Nef protein using novel cell-penetrating peptides for development of HIV-1 vaccine candidate.

    abstract:OBJECTIVES:A potent HIV vaccine should overcome some limitations such as polymorphism of human HLA, the diversity of HIV-1 virus, and the lack of an effective delivery system. In this study, a DNA construct encoding Nef60-84, Nef126-144, Vpr34-47, Vpr60-75, Gp16030-53, Gp160308-323, and P248-151 epitopes was designed u...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-020-03060-3

    authors: Davoodi S,Bolhassani A,Namazi F

    更新日期:2021-01-01 00:00:00

  • Gene expression profiles of the thermotolerant yeast Saccharomyces cerevisiae strain KKU-VN8 during high-temperature ethanol fermentation using sweet sorghum juice.

    abstract:OBJECTIVES:To investigate gene expression profiles of the thermotolerant yeast Saccharomyces cerevisiae strain KKU-VN8, a potential high-ethanol producer, in response to various stresses during high-temperature ethanol fermentation using sweet sorghum juice (SSJ) under optimal conditions. RESULTS:The maximal ethanol c...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-017-2398-y

    authors: Techaparin A,Thanonkeo P,Klanrit P

    更新日期:2017-10-01 00:00:00

  • On-line monitoring of the methanol concentration in Pichia pastoris cultures producing an heterologous lipase by sequential injection analysis.

    abstract::An automated sequential injection analysis (SIA) system using stop-flow technique was developed to determine methanol concentration by means of the enzymatic reactions of alcohol oxidase and peroxidase. Its application as an on-line device for monitoring Pichia pastoris fermentations producing an heterologous protein ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1026228518418

    authors: Surribas A,Cos O,Montesinos JL,Valero F

    更新日期:2003-11-01 00:00:00

  • High-level expression of functional recombinant human coagulation factor VII in insect cells.

    abstract::Recombinant coagulation factor VII (FVII) is used as a potential therapeutic intervention in hemophilia patients who produce antibodies against the coagulation factors. Mammalian cell lines provide low levels of expression, however, the Spodoptera frugiperda Sf9 cell line and baculovirus expression system are powerful...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0227-7

    authors: Masroori N,Halabian R,Mohammadipour M,Roushandeh AM,Rouhbakhsh M,Najafabadi AJ,Fathabad ME,Salimi M,Shokrgozar MA,Roudkenar MH

    更新日期:2010-06-01 00:00:00

  • Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice.

    abstract::Most high-affinity phosphate transporter genes (OsPTs) in rice were highly induced in roots when phosphate was depleted. OsPT1, however, was highly expressed in primary roots and leaves regardless of external phosphate concentrations. This finding was confirmed histochemically using transgenic rice plants that express...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-008-9757-7

    authors: Seo HM,Jung Y,Song S,Kim Y,Kwon T,Kim DH,Jeung SJ,Yi YB,Yi G,Nam MH,Nam J

    更新日期:2008-10-01 00:00:00

  • delta-(D -alpha-Aminoadipoyl)-cleaving amidase of Ochrobactrum anthropi.

    abstract::Ochrobactrum anthropi cleaved the delta-(D-alpha-aminoadipoyl)-side chain from delta-(D-alpha-aminoadipoyl)-7-amino-4-methylcoumarin, a beta-lactamase-resistant cephalosporin C analogue. In whole cell conversions up to 1 nkat g(-1) dry cell wt were achieved. O. anthropi possesses also gamma-D-glutamyltranspeptidase ac...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-005-3903-2

    authors: Patett F,Fischer L

    更新日期:2005-12-01 00:00:00

  • Genome shuffling improves production of the low-temperature alkalophilic lipase by Acinetobacter johnsonii.

    abstract::The production of a low-temperature alkalophilic lipase from Acinetobacter johnsonii was improved using genome shuffling. The starting populations, obtained by UV irradiation and diethyl sulfate mutagenesis, were subjected to recursive protoplast fusion. The optimal conditions for protoplast formation and regeneration...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-011-0749-7

    authors: Wang H,Zhang J,Wang X,Qi W,Dai Y

    更新日期:2012-01-01 00:00:00

  • Over-expression of the gene (bglBC1) from Bacillus circulans encoding an endo-beta-(1-->3),(1-->4)-glucanase useful for the preparation of oligosaccharides from barley beta-glucan.

    abstract::An endo-beta-(1-->3),(1-->4)-glucanase gene (bglBC1) from Bacillus circulans ATCC21367 was modified by substituting its native promoter with a strong promoter, BJ27X, to increase expression of the gene when cloned into B. subtilis RM125 and B. megaterium ATCC14945. A 771-bp endo-beta-(1-->3),(1-->4)-glucanase open rea...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-004-4581-1

    authors: Kim KH,Kim YO,Ko BS,Youn HJ,Lee DS

    更新日期:2004-11-01 00:00:00

  • A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study.

    abstract::Genomics, transcriptomics, proteomics and fluxomics are powerful omics-technologies that play a major role in today's research. For each of these techniques good sample quality is crucial. Major factors contributing to the quality of a sample is the actual sampling procedure itself and the way the sample is stored dir...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-013-1163-0

    authors: van Eijsden RG,Stassen C,Daenen L,Van Mulders SE,Bapat PM,Siewers V,Goossens KV,Nielsen J,Delvaux FR,Van Hummelen P,Devreese B,Willaert RG

    更新日期:2013-06-01 00:00:00

  • Biosynthetic origin of the carbon skeleton of a novel anti-tumor compound, haloroquinone, from a marine-derived fungus, Halorosellinia sp.

    abstract:PURPOSE OF WORK:The biosynthetic pathway of a new antitumor compound, haloroquinone, is elucidated to facilitate metabolic regulation for product accumulation and modification to produce new bioactive structural analogues of the compound. The biosynthetic origin of a novel promising protein kinase B inh...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-012-1019-z

    authors: Niu C,Cai M,Zhang Y,Zhou X

    更新日期:2012-11-01 00:00:00

  • 4-Vinylphenol production from glucose using recombinant Streptomyces mobaraense expressing a tyrosine ammonia lyase from Rhodobacter sphaeroides.

    abstract:OBJECTIVES:To find a novel host for the production of 4-vinylphenol (4VPh) by screening Streptomyces species. RESULTS:The conversion of p-coumaric acid (pHCA) to 4VPh in Streptomyces mobaraense was evaluated using a medium containing pHCA. S. mobaraense readily assimilated pHCA after 24 h of cultivation to produce 4VP...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2126-z

    authors: Fujiwara R,Noda S,Kawai Y,Tanaka T,Kondo A

    更新日期:2016-09-01 00:00:00

  • Directed evolution of cytochrome P450 for sterol epoxidation.

    abstract::16,17-Epoxysterol plays an important role in pharmaceutical steroid synthesis. To investigate the potential application of cytochrome P450 for epoxysterol synthesis, an approach to the epoxidation of 16,17-epoxysterol, based on directed evolution of cytochrome P450 BM-3, was developed. This comprised random gene mutag...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-013-1254-y

    authors: Jiang D,Tu R,Bai P,Wang Q

    更新日期:2013-10-01 00:00:00

  • Expression, purification and characterization of a vascular endothelial growth factor fusion protein.

    abstract:OBJECTIVES:To prepare recombinant tPep-(vascular endothelial growth factor) VEGF-B and assess its biological activity. RESULTS:This new VEGF fusion protein was constructed using a targeting peptide and prepared using E.coli. The tPep-VEGF-B was refolded from inclusion bodies and purified using affinity chromatography....

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2081-8

    authors: Zhang Y,Tong Y,Gao M,Luo C,Song X,Gao X,Yao W

    更新日期:2016-07-01 00:00:00

  • AcMNPV-BmK IT improves the progeny virus production via baculovirus GP64 envelope fusion protein.

    abstract:OBJECTIVES:To analyze the mechanisms underlying the impact of recombinant Autographa californica multicapsid nucleopolyhedrovirus (AcMNPV)-mediated BmK IT expression on the function of baculovirus GP64 envelope fusion protein and progeny virus production. RESULTS:Viral propagation assay indicated that overexpression G...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2146-8

    authors: Fu Y,Miao Y,Zheng S,Du J,Liang A

    更新日期:2016-10-01 00:00:00

  • Regioselective synthesis of 1,3,5-adamantanetriol from 1,3-adamantanediol using Kitasatospora cells.

    abstract::Washed cells (62 mg) of Kitasatospora sp. GF12 in 4 ml buffer (pH 7) catalyzed the regioselective hydroxylation of 60 mM 1,3-adamantanediol [1,3-ad(OH)(2)] to 30.9 mM 1,3,5-adamantanetriol [1,3,5-ad(OH)(3)] over 120 h at 24 °C. Glycerol at 400 mM was added to the reaction mixture to recycle the intracellular NADH/NADP...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-012-0960-1

    authors: Mitsukura K,Yamanaka N,Yoshida T,Nagasawa T

    更新日期:2012-09-01 00:00:00

  • Alkyl-substituted methoxysilanes enhance the activity and stability of D-amino acid oxidase encapsulated in biomimetic silica.

    abstract::Several alkyl-substituted methoxysilanes were evaluated as potential activity and stability enhancing agents for biomimetic silicification of Rhodosporidium toruloides D-amino acid oxidase (RtDAO). When methyl-substituted silanes along with tetramethoxysilane were used as silicic acid precursors for polyallylamine (PA...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-012-0924-5

    authors: Kuan IC,Chuang CA,Lee SL,Yu CY

    更新日期:2012-08-01 00:00:00

  • Anti-hepatitis B activities of ganoderic acid from Ganoderma lucidum.

    abstract::Ganoderic acid, from Ganoderma lucidum, at 8 microg/ml inhibited replication of hepatitis B virus (HBV) in HepG2215 cells over 8 days. Production of HBV surface antigen and HBV e antigen were 20 and 44% of controls without ganoderic acid. Male KM mice were significantly protected from liver injury, induced with carbon...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9007-9

    authors: Li YQ,Wang SF

    更新日期:2006-06-01 00:00:00

  • cry1 genes from Bacillus thuringiensis: specificity determination and implications for primer design.

    abstract::Some pest management programs employ PCR to identify cry1 genes from Bacillus thuringiensis to predict bacterial toxicity towards different insect pests. However, due to changes on the mode of action of the Cry proteins, new primers had to be designed to detect the new genes. Therefore, an 'in-silico' study of genetic...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-009-0088-0

    authors: Davolos CC,Guidelli-Thuler AM,de Abreu IL,Sena JA,Lemos MV

    更新日期:2009-12-01 00:00:00

  • Surface charge engineering of PQQ glucose dehydrogenase for downstream processing.

    abstract::The ion-exchange chromatography behavior of recombinant glucose dehydrogenase harboring pyrroloquinoline quinone (PQQGDH) was modified to greatly simplify its purification. The surface charge of PQQGDH was engineered by either fusing a three-arginine tail to the C-terminus of PQQGDH (PQQGDH+Arg3) or by substituting th...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1026038201193

    authors: Koh H,Igarashi S,Sode K

    更新日期:2003-10-01 00:00:00

  • Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity?

    abstract::MicroRNA (miRNA) profiling is a first important step in elucidating miRNA functions. Real time quantitative PCR (RT-qPCR) and microarray hybridization approaches as well as ultra high throughput sequencing of miRNAs (small RNA-seq) are popular and widely used profiling methods. All of these profiling approaches face s...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0380-z

    authors: Meyer SU,Pfaffl MW,Ulbrich SE

    更新日期:2010-12-01 00:00:00

  • Site-directed mutagenesis enhances the activity of NADH-FMN oxidoreductase (DszD) activity of Rhodococcus erythropolis.

    abstract::Microbial desulfurization is potentially an alternative process to chemical desulfurization of fossil fuels and their refined products. The dibenzothiophene desulfurizing system of Rhodococcus erythropolis includes DszD which is an NADH-dependent FMN oxidoreductase with 192 residues that is responsible for supplying r...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0254-4

    authors: Kamali N,Tavallaie M,Bambai B,Karkhane AA,Miri M

    更新日期:2010-07-01 00:00:00

  • Potential of biodegradable microneedles as a transdermal delivery vehicle for lidocaine.

    abstract::There has been an increasing interest in applying biotechnology in formulating and characterising new and innovative drug delivery methods, e.g., drug-loaded biodegradable microneedles within the area of transdermal delivery technology. Recently, microneedles have been proposed for use in pain management, e.g., post-o...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-013-1217-3

    authors: Nayak A,Das DB

    更新日期:2013-09-01 00:00:00

  • Selective cleavage of 10-methyl benzo[b]naphtho[2,1-d]thiophene by recombinant Mycobacterium sp. strain.

    abstract::Recombinant Mycobacterium sp. strain MR65 carrying dszABCD genes was used for desulfurization of 10-methylbenzo[b]naphtho[2,1-d]thiophene (10-methyl BNT) in the hexadecane phase. The specific activity was 25% of that of dibenzothiophene (DBT). One of two major metabolites of 10-methyl BNT produced by strain MR65 was i...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1023584805911

    authors: Watanabe K,Noda K,Maruhashi K

    更新日期:2003-05-01 00:00:00

  • Enrichment and detection of circulating tumor cells by immunomagnetic beads and flow cytometry.

    abstract:OBJECTIVE:The purpose of the article is to establish a quick enrichment and detection method using immunomagnetic beads and flow cytometry to analyze circulating tumor cells (CTCs) in the peripheral blood. RESULTS:After incubation with CD326-PE and CD45-APC antibodies, more than 60% MCF7 cells in M-Buffer could be det...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-020-03007-8

    authors: Hu L,Chen X,Chen M,Fang J,Nie J,Dai H

    更新日期:2021-01-01 00:00:00

  • Induced hydrolytic enzymes of ectomycorrhizal fungi against pathogen Rhizoctonia solani.

    abstract::Interactions between ectomycorrhizal fungi (Suillus laricinus, S. tomentosus, Amanita vaginata and Gomphidius viscidus) and the pathogen Rhizoctonia solani in co-culture were studied using both light and scanning electron microscopy. S. laricinus, S. tomentosus and A. vaginata inhibited the growth of the pathogen. Mor...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-008-9760-z

    authors: Tang M,Zhang RQ,Chen H,Zhang HH,Tian ZQ

    更新日期:2008-10-01 00:00:00

  • Growth, N2 fixation and photosynthesis in a cyanobacterium, Trichodesmium sp., under Fe stress.

    abstract::Trichodesmium sp., isolated from the Great Barrier Reef lagoon, was cultured in artificial seawater media containing a range of Fe concentration. Fe additions stimulated growth, N2 fixation, cellular chlorophyll a content, light-saturated chlorophyll a-specific gross photosynthetic capacity (Pmchl a) and the dark resp...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1023068232375

    authors: Fu FX,Bell PR

    更新日期:2003-04-01 00:00:00

  • Growth enhancement of shrimp (Litopenaeus schmitti) after transfer of tilapia growth hormone gene.

    abstract::Electroporation of Litopenaeus schmitti embryos was used to transfer the pE300tiGH15 plasmid that contains the tilapia growth hormone gene (tiGH) complexed with a nuclear localization signal peptide into the zygotes. The gene construct was detected in 35 (36%) of the 98 larvae screened by PCR and Southern blot analyse...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-008-9636-2

    authors: Arenal A,Pimentel R,Pimentel E,Martín L,Santiesteban D,Franco R,Aleström P

    更新日期:2008-05-01 00:00:00

  • Construction of streptavidin-luciferase fusion protein for ATP sensing with fixed form.

    abstract::A fusion protein consisting of streptavidin and firefly luciferase was constructed to establish an accurate measuring technique of local ATP concentration. The fusion protein retained the binding ability of streptavidin and enzymatic activity of luciferase. Also, it could detect the concentration of antigens and could...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/B:BILE.0000032966.17759.08

    authors: Nakamura M,Mie M,Funabashi H,Kobatake E

    更新日期:2004-07-01 00:00:00

  • Conserved microRNA function as a basis for Chinese hamster ovary cell engineering.

    abstract::The use of microRNAs (miRNAs) for improving the efficiency of recombinant protein production by CHO cells is gaining considerable interest for their ability to regulate entire molecular networks. Differential miRNA expression profiling and large-scale transient screening have been the prerequisite for the selection of...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-014-1751-7

    authors: Kelly PS,Gallagher C,Clynes M,Barron N

    更新日期:2015-04-01 00:00:00

  • Lipase-catalyzed syntheses of sugar esters in non-aqueous media.

    abstract::The lipase-catalyzed reaction is useful to obtain sugar esters with chemically defined structures and will contribute to the synthesis of sugar-based compounds by a chemo-enzymatic pathway. The synthesis of sugar esters in nonaqueous media has been attempted for a quarter century. To facilitate the reactions, they hav...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-011-0663-z

    authors: Kobayashi T

    更新日期:2011-10-01 00:00:00