The role of loops on the order of eukaryotes and prokaryotes.

Abstract:

:The study of the three-dimensional organization of chromatin has recently gained much focus in the context of novel techniques for detecting genome-wide contacts using next-generation sequencing. These chromosome conformation capture-based methods give a deep topological insight into the architecture of the genome inside the nucleus. Several recent studies observe a compartmentalization of chromatin interactions into spatially confined domains. This structural feature of interphase chromosomes is not only supported by conventional studies assessing the interaction data of millions of cells, but also by analysis on the level of a single cell. We first present and examine the different models that have been proposed to elucidate these topological domains in eukaryotes. Then we show that a model which relies on the dynamic formation of loops within domains can account for the experimentally observed contact maps. Interestingly, the topological domain structure is not only found in mammalian genomes, but also in bacterial chromosomes.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Hofmann A,Heermann DW

doi

10.1016/j.febslet.2015.04.021

subject

Has Abstract

pub_date

2015-10-07 00:00:00

pages

2958-65

issue

20 Pt A

eissn

0014-5793

issn

1873-3468

pii

S0014-5793(15)00259-8

journal_volume

589

pub_type

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