Patch oligodeoxynucleotide synthesis (POS): a novel method for synthesis of long DNA sequences and full-length genes.

Abstract:

:Synthesis of long DNA fragments is often associated with mutations and requires multiple DNA manipulation steps. A novel DNA synthesis method, referred to as patch oligodeoxynucleotide synthesis (POS) to assembly long DNA fragments is presented here. This method involves connection of two types of oligodeoxynucleotides: long constructional oligonucleotides (COs) and short patch oligonucleotides (POs). Long COs were connected by a ligase with the aid of POs, which were complementary to both adjacent COs to help remove secondary structures during assembly. The partial double-stranded DNA template that was formed was then amplified by PCR. Accordingly, we synthesized SV40 polyadenylation signal sequences (187 bp), a codon-optimized yellow fluorescent protein gene (678 bp), and Rattus norvegicus catenin β1 (2,352 bp). This presented method can be broadly applied to synthesize DNA fragments of varying lengths with great convenience.

journal_name

Biotechnol Lett

journal_title

Biotechnology letters

authors

Yang G,Wang S,Wei H,Ping J,Liu J,Xu L,Zhang W

doi

10.1007/s10529-011-0832-0

subject

Has Abstract

pub_date

2012-04-01 00:00:00

pages

721-8

issue

4

eissn

0141-5492

issn

1573-6776

journal_volume

34

pub_type

杂志文章
  • Synergistic effects of TAL1 over-expression and PHO13 deletion on the weak acid inhibition of xylose fermentation by industrial Saccharomyces cerevisiae strain.

    abstract::In the industrial production of bioethanol from lignocellulosic biomass, a strain of Saccharomyces cerevisiae that can ferment xylose in the presence of inhibitors is of utmost importance. The recombinant, industrial-flocculating S. cerevisiae strain NAPX37, which can ferment xylose, was used as the parent to delete t...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-014-1581-7

    authors: Li YC,Gou ZX,Liu ZS,Tang YQ,Akamatsu T,Kida K

    更新日期:2014-10-01 00:00:00

  • Metabolic engineering of Saccharomyces cerevisiae for linalool production.

    abstract:OBJECTIVES:To engineer the yeast Saccharomyces cerevisiae for the heterologous production of linalool. RESULTS:Expression of linalool synthase gene from Lavandula angustifolia enabled heterologous production of linalool in S. cerevisiae. Downregulation of ERG9 gene, that encodes squalene synthase, by replacing its nat...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-015-2000-4

    authors: Amiri P,Shahpiri A,Asadollahi MA,Momenbeik F,Partow S

    更新日期:2016-03-01 00:00:00

  • Acidic pH conditions induce dissociation of the haem from the protein and destabilise the catalase isolated from Aspergillus terreus.

    abstract::The stability (half-life, t(½)) of the large catalase (CAT) isolated from Aspergillus terreus was decreased under acidic conditions (maximum t(½) approximately 8.5 months at pH ≤ 6) versus alkaline conditions (t(½) approximately 15 months at pH 8-12). Acidic conditions induce the dissociation of haem from CAT, as reve...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0442-2

    authors: Vatsyayan P,Goswami P

    更新日期:2011-02-01 00:00:00

  • 3D in vitro co-culture models based on normal cells and tumor spheroids formed by cyclic RGD-peptide induced cell self-assembly.

    abstract:OBJECTIVES:To design novel 3D in vitro co-culture models based on the RGD-peptide-induced cell self-assembly technique. RESULTS:Multicellular spheroids from M-3 murine melanoma cells and L-929 murine fibroblasts were obtained directly from monolayer culture by addition of culture medium containing cyclic RGD-peptide. ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2218-9

    authors: Akasov R,Gileva A,Zaytseva-Zotova D,Burov S,Chevalot I,Guedon E,Markvicheva E

    更新日期:2017-01-01 00:00:00

  • A novel two-step fermentation process for improved arachidonic acid production by Mortierella alpina.

    abstract::A novel two-step fermentation process was developed to enhance arachidonic acid (ARA) production by Mortierella alpina ME-1 in a 5 l fermentor. Agitation speed and aeration rate were adjusted from 180 to 40 rpm and from 0.6 to 1 vvm, respectively, after 5 days cultivation, to decrease physical damage to the mycelia an...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-008-9661-1

    authors: Jin MJ,Huang H,Xiao AH,Zhang K,Liu X,Li S,Peng C

    更新日期:2008-06-01 00:00:00

  • Plasma nitriding under low temperature improves the endothelial cell biocompatibility of 316L stainless steel.

    abstract:OBJECTIVES:To evaluate the effects of the surface modification of 316L stainless steel (SS) by low-temperature plasma nitriding on endothelial cells for stent applications. RESULTS:X-ray diffraction (XRD) confirmed the incorporation of nitrogen into the treated steel. The surface treatment significantly increased SS r...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-019-02657-7

    authors: Braz JKFS,Martins GM,Sabino V,Vitoriano JO,Barboza CAG,Soares AKMC,Rocha HAO,Oliveira MF,Alves Júnior C,Moura CEB

    更新日期:2019-05-01 00:00:00

  • Expression of an antibody-targeted plasminogen activator in Escherichia coli using chemically induced stress responses.

    abstract::A recombinant gene coding for an antibody-targeted urokinase-type plasminogen activator was constructed for the purpose of enhancing the thrombolytic specificity of urokinase. The recombinant gene was cloned into prokaryotic expression vector pTrcHisA, and transformed into Escherichia coli strain Rosetta (DE3). Less t...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-004-3185-0

    authors: Yu M,Yu M,Ru B

    更新日期:2004-11-01 00:00:00

  • High-level production of α-amylase by manipulating the expression of alanine racamase in Bacillus licheniformis.

    abstract:OBJECTIVES:To improve target protein production by manipulating expression levels of alanine racemase in Bacillus licheniformis. RESULTS:The gene of dal was identified to be responsible for alanine racemase function. Based on the selection marker of dal, a food-grade expression system was constructed in B. licheniform...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-017-2359-5

    authors: He P,Zhang Z,Cai D,Chen Y,Wang H,Wei X,Li S,Chen S

    更新日期:2017-09-01 00:00:00

  • New aqueous two phase system comprising polyethylene glycol and xanthan.

    abstract::A new aqueous two phase system comprising polyethylene glycol and xanthan is reported together with its phase diagram. The phase composition of the bottom phase did not vary (PEG 1.6-1.8% w/w; xanthan 0.24-0.28% w/w) while that of the top phase varied significantly (PEG 4-5% w/w, xanthan 0.05-1.37% w/w). Unlike conven...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-005-4682-5

    authors: Chethana S,Rastogi NK,Raghavarao KS

    更新日期:2006-01-01 00:00:00

  • Overexpression of a soybean O-acetylserine (thiol) lyase-encoding gene GmOASTL4 in tobacco increases cysteine levels and enhances tolerance to cadmium stress.

    abstract::O-Acetylserine (thiol) lyase (OASTL, EC 2.5.1.47) catalyzes the final step in cysteine biosynthesis. The soybean GmOASTL4 gene was overexpressed in tobacco. Transgenic plants showed markedly increased accumulation of transcripts and higher cysteine content compared with the wild-type. Upon exposure to cadmium stress, ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-009-0178-z

    authors: Ning H,Zhang C,Yao Y,Yu D

    更新日期:2010-04-01 00:00:00

  • Cloning, expression and characterization of glycoside hydrolase family 11 endoxylanase from Bacillus pumilus ARA.

    abstract::An endoxylanase gene, xynA, was cloned from Bacillus pumilus ARA and expressed in Escherichia coli. The open reading frame of the xynA gene was 687 bp encoding a signal peptide and a mature xylanase with a molecular mass of 23 kDa. The enzyme was categorized as a glycosyl hydrolase family 11 member based on the sequen...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-011-0568-x

    authors: Qu W,Shao W

    更新日期:2011-07-01 00:00:00

  • Cell line development for biomanufacturing processes: recent advances and an outlook.

    abstract::At the core of a biomanufacturing process for recombinant proteins is the production cell line. It influences the productivity and product quality. Its characteristics also dictate process development, as the process is optimized to complement the producing cell to achieve the target productivity and quality. Advances...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-015-1843-z

    authors: Le H,Vishwanathan N,Jacob NM,Gadgil M,Hu WS

    更新日期:2015-08-01 00:00:00

  • Deletion of a KU80 homolog enhances homologous recombination in the thermotolerant yeast Kluyveromyces marxianus.

    abstract::Targeted gene replacement in the thermotolerant yeast Kluyveromyces marxianus KCTC 17555 has been hampered by its propensity to non-homologous end joining (NHEJ). To enhance homologous recombination (HR) by blocking NHEJ, we identified and disrupted the K. marxianus KU80 gene. The ku80 deletion mutant strain (Kmku80∆)...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-014-1576-4

    authors: Choo JH,Han C,Kim JY,Kang HA

    更新日期:2014-10-01 00:00:00

  • Over-expression of a glutathione S-transferase gene, GsGST, from wild soybean (Glycine soja) enhances drought and salt tolerance in transgenic tobacco.

    abstract::Glycine soja is a species of soybean that survives in adverse environments including high salt and drought conditions. We constructed a cDNA library from G. soja seedlings treated with NaCl and isolated a glutathione S-transferase gene (GsGST: GQ265911) from the library. The cDNA encoding GsGST contains an open readin...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0269-x

    authors: Ji W,Zhu Y,Li Y,Yang L,Zhao X,Cai H,Bai X

    更新日期:2010-08-01 00:00:00

  • Enhanced synthesis of L-threo-3,4-dihydroxyphenylserine by high-density whole-cell biocatalyst of recombinant L-threonine aldolase from Streptomyces avelmitilis.

    abstract::L-threo-3,4-Dihydroxyphenylserine (DOPS) is a chiral unnatural beta-hydroxy amino acid used for the treatment of Parkinson disease. We developed a continuous bioconversion system for DOPS production that uses whole-cell biocatalyst of recombinant Escherichia coli expressing L-threonine aldolase (L-TA) genes cloned fro...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-008-9885-0

    authors: Baik SH,Yoshioka H

    更新日期:2009-03-01 00:00:00

  • A fluorescence-based Coomassie Blue protocol for two-dimensional gel-based proteomics.

    abstract::A sensitive and convenient "visible SYPRO" staining protocol was developed for visualizing proteins after SDS-PAGE. Gels were sensitized with SYPRO Ruby and then stained with the Coomassie Brilliant Blue G-250 protocol (Blue Silver). This combined protocol had similar or better linearity than staining with only SYPRO ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0404-8

    authors: Yang Y,Wang J,Bu D,Zhang L,Li S,Zhou L,Wei H

    更新日期:2011-01-01 00:00:00

  • Beneficial bacteria of agricultural importance.

    abstract::The rhizosphere is the soil-plant root interphase and in practice consists of the soil adhering to the root besides the loose soil surrounding it. Plant growth-promoting rhizobacteria (PGPR) are potential agents for the biological control of plant pathogens. A biocontrol strain should be able to protect the host plant...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-010-0347-0

    authors: Babalola OO

    更新日期:2010-11-01 00:00:00

  • Construction of genetic parts from the Corynebacterium glutamicum genome with high expression activities.

    abstract:OBJECTIVE:To construct effective genetic expression parts controlling transcription and translation initiation for synthetic biology and heterologous expression in Corynebacterium glutamicum. RESULT:Twelve highly expressed genes were identified from the proteomic data of C. glutamicum. Their related sequences were use...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2196-y

    authors: Zhao Z,Liu X,Zhang W,Yang Y,Dai X,Bai Z

    更新日期:2016-12-01 00:00:00

  • Directed evolution of cytochrome P450 for sterol epoxidation.

    abstract::16,17-Epoxysterol plays an important role in pharmaceutical steroid synthesis. To investigate the potential application of cytochrome P450 for epoxysterol synthesis, an approach to the epoxidation of 16,17-epoxysterol, based on directed evolution of cytochrome P450 BM-3, was developed. This comprised random gene mutag...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-013-1254-y

    authors: Jiang D,Tu R,Bai P,Wang Q

    更新日期:2013-10-01 00:00:00

  • A new virus-induced gene silencing vector based on Euphorbia mosaic virus-Yucatan peninsula for NPR1 silencing in Nicotiana benthamiana and Capsicum annuum var. Anaheim.

    abstract::Virus-induced gene silencing is based on the sequence-specific degradation of RNA. Here, a gene silencing vector derived from EuMV-YP, named pEuMV-YP:ΔAV1, was used to silence ChlI and NPR1 genes in Nicotiana benthamiana. The silencing of the ChlI transcripts was efficient in the stems, petioles and leaves as reflecte...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-013-1146-1

    authors: Villanueva-Alonzo HJ,Us-Camas RY,López-Ochoa LA,Robertson D,Guerra-Peraza O,Minero-García Y,Moreno-Valenzuela OA

    更新日期:2013-05-01 00:00:00

  • Responses of the antioxidative and biotransformation enzymes in the aquatic fungus Mucor hiemalis exposed to cyanotoxins.

    abstract:OBJECTIVES:To investigate antioxidative and biotransformation enzyme responses in Mucor hiemalis towards cyanotoxins considering its use in mycoremediation applications. RESULTS:Catalase (CAT), glutathione reductase (GR), and glutathione peroxidase (GPx) in M. hiemalis maintained their activities at all tested microcy...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-017-2348-8

    authors: Balsano E,Esterhuizen-Londt M,Hoque E,Lima SP

    更新日期:2017-08-01 00:00:00

  • Selective cleavage of 10-methyl benzo[b]naphtho[2,1-d]thiophene by recombinant Mycobacterium sp. strain.

    abstract::Recombinant Mycobacterium sp. strain MR65 carrying dszABCD genes was used for desulfurization of 10-methylbenzo[b]naphtho[2,1-d]thiophene (10-methyl BNT) in the hexadecane phase. The specific activity was 25% of that of dibenzothiophene (DBT). One of two major metabolites of 10-methyl BNT produced by strain MR65 was i...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1023584805911

    authors: Watanabe K,Noda K,Maruhashi K

    更新日期:2003-05-01 00:00:00

  • Preparation of dodecanol-tolerant strains of Yarrowia lipolytica.

    abstract::Dodecanol (1% v/v) and dodecanoic acid (1% w/v) inhibited growth of Yarrowia lipolytica in complex media supplemented with glucose but dodecanedioic acid (1% w/v) was not toxic. Dodecanol-tolerant strains were prepared from the wild type strain H222 as well as the acyl-CoA oxidase deleted (deltaPOX2, POX3, POX5) strai...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/b:bile.0000025890.97067.98

    authors: Smit MS,Mokgoro MM,Setati E,Nicaud JM

    更新日期:2004-05-01 00:00:00

  • A novel Xist RNA-mediated chromosome inactivation model using a mouse artificial chromosome.

    abstract:OBJECTIVE:To develop a mouse artificial chromosome (MAC) carrying the mouse Xist gene (X-inactive specific transcript; Xist-MAC) as a systematic in vitro approach for investigating Xist RNA-mediated chromosome inactivation. RESULTS:Ectopic expression of the Xist gene in CHO cells led to the accumulation of Xist RNA in...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-020-02826-z

    authors: Inaoka D,Sunamura N,Ohira T,Nakayama Y,Kugoh H

    更新日期:2020-05-01 00:00:00

  • Degradation of lignin-containing materials by xylanase in biopreparation of cotton.

    abstract::Solubilization of lignin and carbohydrates from the lignin-holocellulose structure of cotton seed-coat fragments was investigated by UV/VIS spectrometry. Xylanase (Pulpzyme HC) pre-treatment partially destroyed the lignocellulosic structure of the seed-coat fragments, producing reducing sugars and soluble lignin in th...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9042-6

    authors: Csiszár E,Losonczi A,Koczka B,Szakács G,Pomlényi A

    更新日期:2006-05-01 00:00:00

  • High-level expression and improved folding of proteins by using the vp39 late promoter enhanced with homologous DNA regions.

    abstract::Some recombinant proteins expressed by baculovirus expression vector systems (BEVS) aggregate because the BEVS can produce large amounts of protein late during infection, when post-translational modification and protein quality control mechanisms are inactive. For expression during earlier stages than that driven by t...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0340-7

    authors: Ishiyama S,Ikeda M

    更新日期:2010-11-01 00:00:00

  • Molecular cloning and functional expression of two key carotene synthetic genes derived from Blakeslea trispora into E. coli for increased β-carotene production.

    abstract::Blakeslea trispora is used commercially to produce β-carotene. Isopentenyl pyrophosphate isomerase (IPI) and geranylgeranyl pyrophosphate synthase (GGPS) are key enzymes in the biosynthesis of carotenoids. The cDNAs of genes ipi and carG were cloned from the fungus and expressed in Escherichia coli. Greater GGPS activ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-012-1004-6

    authors: Sun J,Sun XX,Tang PW,Yuan QP

    更新日期:2012-11-01 00:00:00

  • Improved production of pristinamycin coupled with an adsorbent resin in fermentation by Streptomyces pristinaespiralis.

    abstract::Batch fermentation by Streptomyces pristinaespiralis with the addition of adsorbent resins was used to increase the production of pristinamycin. In consideration of the adsorption capacity and the desorption ability, a polymeric resin, JD-1, was finally selected. The maximum production of pristinamycin in Erlenmeyer f...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9157-9

    authors: Jia B,Jin ZH,Lei YL,Mei LH,Li NH

    更新日期:2006-11-01 00:00:00

  • Microbial community of aerobic granules for ammonium and sulphide removal in a sequencing batch reactor.

    abstract::Aerobic granules for sulphide and ammonium removal were cultivated in a sequencing batch reactor, and the microbial community of the aerobic granules was investigated by denaturing gradient gel electrophoresis. The loading rate increased from 0.15 to 0.9 kg S2− m−3 d−1, and the removal efficiencies of sulphide, chemic...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-012-0857-z

    authors: Su C,Zhu L,Zhang C,Qi X,Guo Y,Gao R

    更新日期:2012-05-01 00:00:00

  • Growth phase-dependent changes in the expression of global regulatory genes and associated metabolic pathways in Escherichia coli.

    abstract::Metabolic regulation in Escherichia coli was studied in terms of the changes in the expression of the global regulatory genes rpoD, rpoS, soxRS, cra, fadR, iclR and arcA at three different growth phases, in batch culture. The expression of rpoS and several rpoS-dependent metabolic pathway genes, such as tktB, talA, fu...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-007-9621-1

    authors: Rahman M,Hasan MR,Shimizu K

    更新日期:2008-05-01 00:00:00