L1CAM expression in endometrial carcinomas is regulated by usage of two different promoter regions.

Abstract:

BACKGROUND:The L1 cell adhesion molecule (L1CAM) was originally identified as a neural adhesion molecule involved in axon guidance. In many human epithelial carcinomas L1CAM is overexpressed and thereby augments cell motility, invasion and metastasis formation. L1CAM positive carcinomas are associated with bad prognosis. Recent data point out that L1CAM is regulated in a fashion similar to epithelial-mesenchymal transition (EMT). Previous studies have implied the transcription factors Slug and/or β-catenin in L1CAM transcriptional regulation. However, the regulation of human L1CAM expression at the transcriptional level is not well understood. RESULTS:To better understand the molecular basis of L1CAM transcriptional regulation, we carried out a detailed characterization of the human L1CAM promoter. We identified two transcription start sites, the first in front of a non-translated exon 0 (promoter 1) and the other next to the first protein-coding exon 1 (promoter 2). Both sites could be verified in endometrial carcinoma (EC) cell lines and appear to be used in a cell-type specific manner. The two identified promoter regions showed activity in luciferase reporter assays. Chromatin-IP analyses confirmed the in silico predicted E-boxes, binding sites for transcription factors Snail and Slug, as well as Lef-1 sites, which are related to β-catenin-mediated transcriptional regulation, in both promoters. Overexpression of β-catenin exclusively augmented activity of promoter 1 whereas Slug enhanced promoter 1 and 2 activity suggesting that both promoters can be active. Overexpression of β-catenin or Slug could upregulate L1CAM expression in a cell-type specific manner. CONCLUSIONS:Our results, for the first time, provide evidence that the L1CAM gene has two functionally active promoter sites that are used in a cell-type specific manner. Slug and β-catenin are involved L1CAM transcriptional regulation. Nevertheless, Slug rather than β-catenin levels are correlated with L1CAM expression in EC cell lines. Our findings suggest that the L1CAM transcriptional regulation is more complex than anticipated and this study provides the basis for a better understanding of L1CAM regulation in non-neuronal/tumor cells.

journal_name

BMC Mol Biol

journal_title

BMC molecular biology

authors

Pfeifer M,Schirmer U,Geismann C,Schäfer H,Sebens S,Altevogt P

doi

10.1186/1471-2199-11-64

subject

Has Abstract

pub_date

2010-08-27 00:00:00

pages

64

issn

1471-2199

pii

1471-2199-11-64

journal_volume

11

pub_type

杂志文章
  • Critical evaluation of methods used to determine amplification efficiency refutes the exponential character of real-time PCR.

    abstract:BACKGROUND:The challenge of determining amplification efficiency has long been a predominant aspect of implementing real-time qPCR, playing a critical role in the accuracy and reliability that can be achieved. Based upon analysis of amplification profile position, standard curves are currently the gold standard for amp...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-9-96

    authors: Rutledge RG,Stewart D

    更新日期:2008-10-30 00:00:00

  • GATA elements control repression of cardiac troponin I promoter activity in skeletal muscle cells.

    abstract:BACKGROUND:We reported previously that the cardiac troponin I (cTnI) promoter drives cardiac-specific expression of reporter genes in cardiac muscle cells and in transgenic mice, and that disruption of GATA elements inactivates the cTnI promoter in cultured cardiomyocytes. We have now examined the role of cTnI promoter...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-8-78

    authors: Di Lisi R,Picard A,Ausoni S,Schiaffino S

    更新日期:2007-09-17 00:00:00

  • Checkpoint effects and telomere amplification during DNA re-replication in fission yeast.

    abstract:BACKGROUND:Although much is known about molecular mechanisms that prevent re-initiation of DNA replication on newly replicated DNA during a single cell cycle, knowledge is sparse regarding the regions that are most susceptible to re-replication when those mechanisms are bypassed and regarding the extents to which check...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-8-119

    authors: Mickle KL,Oliva A,Huberman JA,Leatherwood J

    更新日期:2007-12-21 00:00:00

  • The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase.

    abstract:BACKGROUND:Naturally occurring tRNAs contain numerous modified nucleosides. They are formed by enzymatic modification of the primary transcripts during the complex RNA maturation process. In model organisms Escherichia coli and Saccharomyces cerevisiae most enzymes involved in this process have been identified. Interes...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-7-23

    authors: Purta E,van Vliet F,Tkaczuk KL,Dunin-Horkawicz S,Mori H,Droogmans L,Bujnicki JM

    更新日期:2006-07-18 00:00:00

  • The major transcription initiation site of the p27Kip1 gene is conserved in human and mouse and produces a long 5'-UTR.

    abstract:BACKGROUND:The cyclin-dependent kinase inhibitor p27Kip1 is essential for proper control of cell cycle progression. The levels of p27Kip1 are regulated by several mechanisms including transcriptional and translational controls. In order to delineate the molecular details of these regulatory mechanisms it is important t...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-2-12

    authors: Coleman J,Hawkinson M,Miskimins R,Miskimins WK

    更新日期:2001-01-01 00:00:00

  • Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

    abstract:BACKGROUND:In spite of large intergenic spaces in plant and animal genomes, 7% to 30% of genes in the genomes encode overlapping cis-natural antisense transcripts (cis-NATs). The widespread occurrence of cis-NATs suggests an evolutionary advantage for this type of genomic arrangement. Experimental evidence for the regu...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-9-6

    authors: Jin H,Vacic V,Girke T,Lonardi S,Zhu JK

    更新日期:2008-01-14 00:00:00

  • Biochemical characterization of a recombinant Japanese encephalitis virus RNA-dependent RNA polymerase.

    abstract:BACKGROUND:Japanese encephalitis virus (JEV) NS5 is a viral nonstructural protein that carries both methyltransferase and RNA-dependent RNA polymerase (RdRp) domains. It is a key component of the viral RNA replicase complex that presumably includes other viral nonstructural and cellular proteins. The biochemical proper...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-8-59

    authors: Kim YG,Yoo JS,Kim JH,Kim CM,Oh JW

    更新日期:2007-07-11 00:00:00

  • A modification of Representational Difference Analysis, with application to the cloning of a candidate in the Reelin signalling pathway.

    abstract:BACKGROUND:cDNA-RDA is one of the subtractive cloning techniques used to isolate differentially expressed genes between two complex cDNA populations. In the present study we present a modification of the protocol described by Hubank and Schatz. RESULTS:In the post-hybridization mix, the 5'-ends of homoduplexes of inte...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-3-6

    authors: Kuvbachieva AA,Goffinet AM

    更新日期:2002-04-24 00:00:00

  • Selection of reference genes for normalisation of real-time RT-PCR in brain-stem death injury in Ovis aries.

    abstract:BACKGROUND:Heart and lung transplantation is frequently the only therapeutic option for patients with end stage cardio respiratory disease. Organ donation post brain stem death (BSD) is a pre-requisite, yet BSD itself causes such severe damage that many organs offered for donation are unusable, with lung being the orga...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-10-72

    authors: Passmore M,Nataatmadja M,Fraser JF

    更新日期:2009-07-23 00:00:00

  • Alternative splicing of the neurofibromatosis type 1 pre-mRNA is regulated by the muscleblind-like proteins and the CUG-BP and ELAV-like factors.

    abstract:BACKGROUND:Alternative splicing is often subjected to complex regulatory control that involves many protein factors and cis-acting RNA sequence elements. One major challenge is to identify all of the protein players and define how they control alternative expression of a particular exon in a combinatorial manner. The M...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-13-35

    authors: Fleming VA,Geng C,Ladd AN,Lou H

    更新日期:2012-12-10 00:00:00

  • Molecular characterization of senescence marker protein-30 gene promoter: identification of repressor elements and functional nuclear factor binding sites.

    abstract:BACKGROUND:Senescence marker protein-30 (SMP30), whose expression declines during aging in rat liver, has been proposed as an important aging marker. Besides apoptosis, SMP30 also protects cells against various other injuries by enhancement of membrane calcium-pump activity. The mechanism of this differential gene expr...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-9-43

    authors: Rath B,Pandey RS,Debata PR,Maruyama N,Supakar PC

    更新日期:2008-04-29 00:00:00

  • Post-translational generation of constitutively active cores from larger phosphatases in the malaria parasite, Plasmodium falciparum: implications for proteomics.

    abstract:BACKGROUND:Although the complete genome sequences of a large number of organisms have been determined, the exact proteomes need to be characterized. More specifically, the extent to which post-translational processes such as proteolysis affect the synthesized proteins has remained unappreciated. We examined this issue ...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-5-6

    authors: Kumar R,Musiyenko A,Oldenburg A,Adams B,Barik S

    更新日期:2004-07-01 00:00:00

  • Characterization, phylogeny, alternative splicing and expression of Sox30 gene.

    abstract:BACKGROUND:Members of the Sox gene family isolated from both vertebrates and invertebrates have been proved to participate in a wide variety of developmental processes, including sex determination and differentiation. Among these members, Sox30 had been considered to exist only in mammals since its discovery, and its e...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-11-98

    authors: Han F,Wang Z,Wu F,Liu Z,Huang B,Wang D

    更新日期:2010-12-11 00:00:00

  • Identification of two amino acids in the C-terminal domain of mouse CRY2 essential for PER2 interaction.

    abstract:BACKGROUND:Cryptochromes (CRYs) are a class of flavoprotein blue-light signaling receptors found in plants and animals, and they control plant development and the entrainment of circadian rhythms. They also act as integral parts of the central circadian oscillator in humans and other animals. In mammals, the CLOCK-BMAL...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-11-69

    authors: Ozber N,Baris I,Tatlici G,Gur I,Kilinc S,Unal EB,Kavakli IH

    更新日期:2010-09-14 00:00:00

  • Ror2 modulates the canonical Wnt signaling in lung epithelial cells through cooperation with Fzd2.

    abstract:BACKGROUND:Wnt signaling is mediated through 1) the beta-catenin dependent canonical pathway and, 2) the beta-catenin independent pathways. Multiple receptors, including Fzds, Lrps, Ror2 and Ryk, are involved in Wnt signaling. Ror2 is a single-span transmembrane receptor-tyrosine kinase (RTK). The functions of Ror2 in ...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-9-11

    authors: Li C,Chen H,Hu L,Xing Y,Sasaki T,Villosis MF,Li J,Nishita M,Minami Y,Minoo P

    更新日期:2008-01-23 00:00:00

  • Regulation of poly(ADP-ribose) polymerase-1 (PARP-1) gene expression through the post-translational modification of Sp1: a nuclear target protein of PARP-1.

    abstract:BACKGROUND:Poly(ADP-ribose) polymerase-1 (PARP-1) is a nuclear enzyme that plays critical functions in many biological processes, including DNA repair and gene transcription. The main function of PARP-1 is to catalyze the transfer of ADP-ribose units from nicotinamide adenine dinucleotide (NAD+) to a large array of acc...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-8-96

    authors: Zaniolo K,Desnoyers S,Leclerc S,Guérin SL

    更新日期:2007-10-25 00:00:00

  • Parental origin of chromosomes influences crossover activity within the Kcnq1 transcriptionally imprinted domain of Mus musculus.

    abstract:BACKGROUND:Among the three functions of DNA, mammalian replication and transcription can be subject to epigenetic imprinting specified by the parental origin of chromosomes, and although there is suggestive indication that this is also true for meiotic recombination, no definitive evidence has yet been reported. RESUL...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-10-43

    authors: Ng SH,Madeira R,Parvanov ED,Petros LM,Petkov PM,Paigen K

    更新日期:2009-05-13 00:00:00

  • SPRR2A enhances p53 deacetylation through HDAC1 and down regulates p21 promoter activity.

    abstract:BACKGROUND:Small proline rich protein (SPRR) 2A is one of 14 SPRR genes that encodes for a skin cross-linking protein, which confers structural integrity to the cornified keratinocyte cell envelope. New evidence, however, shows that SPRR2A is also a critical stress and wound repair modulator: it enables a variety of ba...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-13-20

    authors: Mizuguchi Y,Specht S,Lunz JG 3rd,Isse K,Corbitt N,Takizawa T,Demetris AJ

    更新日期:2012-06-25 00:00:00

  • Sequence periodicity of Escherichia coli is concentrated in intergenic regions.

    abstract:BACKGROUND:Sequence periodicity with a period close to the DNA helical repeat is a very basic genomic property. This genomic feature was demonstrated for many prokaryotic genomes. The Escherichia coli sequences display the period close to 11 base pairs. RESULTS:Here we demonstrate that practically only ApA/TpT dinucle...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-5-14

    authors: Hosid S,Trifonov EN,Bolshoy A

    更新日期:2004-08-26 00:00:00

  • A reliable method for quantification of splice variants using RT-qPCR.

    abstract:BACKGROUND:The majority of protein isoforms arise from alternative splicing of the encoding primary RNA transcripts. To understand the significance of single splicing events, reliable techniques are needed to determine their incidence. However, existing methods are labour-intensive, error-prone or of limited use. RESU...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/s12867-016-0060-1

    authors: Camacho Londoño J,Philipp SE

    更新日期:2016-03-15 00:00:00

  • Single and combinatorial chromatin coupling events underlies the function of transcript factor Krüppel-like factor 11 in the regulation of gene networks.

    abstract:BACKGROUND:Krüppel-like factors (KLFs) are a group of master regulators of gene expression conserved from flies to human. However, scant information is available on either the mechanisms or functional impact of the coupling of KLF proteins to chromatin remodeling machines, a deterministic step in transcriptional regula...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-15-10

    authors: Calvo E,Grzenda A,Lomberk G,Mathison A,Iovanna J,Urrutia R

    更新日期:2014-05-25 00:00:00

  • Alternative splicing and differential subcellular localization of the rat FGF antisense gene product.

    abstract:BACKGROUND:GFG/NUDT is a nudix hydrolase originally identified as the product of the fibroblast growth factor-2 antisense (FGF-AS) gene. While the FGF-AS RNA has been implicated as an antisense regulator of FGF-2 expression, the expression and function of the encoded GFG protein is largely unknown. Alternative splicing...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-9-10

    authors: Zhang SC,MacDonald KA,Baguma-Nibasheka M,Geldenhuys L,Casson AG,Murphy PR

    更新日期:2008-01-23 00:00:00

  • Comparative in silico analysis identifies bona fide MyoD binding sites within the Myocyte stress 1 gene promoter.

    abstract:BACKGROUND:Myocyte stress 1 (MS1) is a striated muscle actin binding protein required for the muscle specific activity of the evolutionary ancient myocardin related transcription factor (MRTF)/serum response factor (SRF) transcriptional pathway. To date, little is known about the molecular mechanisms that govern skelet...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-9-50

    authors: Ounzain S,Dacwag CS,Samani NJ,Imbalzano AN,Chong NW

    更新日期:2008-05-19 00:00:00

  • Characterization of housekeeping genes in zebrafish: male-female differences and effects of tissue type, developmental stage and chemical treatment.

    abstract:BACKGROUND:Research using the zebrafish model has experienced a rapid growth in recent years. Although real-time reverse transcription PCR (QPCR), normalized to an internal reference ("housekeeping") gene, is a frequently used method for quantifying gene expression changes in zebrafish, many commonly used housekeeping ...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-9-102

    authors: McCurley AT,Callard GV

    更新日期:2008-11-12 00:00:00

  • RAD51 paralogs promote homology-directed repair at diversifying immunoglobulin V regions.

    abstract:BACKGROUND:Gene conversion depends upon the same factors that carry out more general process of homologous recombination, including homologous gene targeting and recombinational repair. Among these are the RAD51 paralogs, conserved factors related to the key recombination factor, RAD51. In chicken and other fowl, gene ...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-10-98

    authors: Ordinario EC,Yabuki M,Handa P,Cummings WJ,Maizels N

    更新日期:2009-10-28 00:00:00

  • Analysis of the regulation of fatty acid binding protein 7 expression in human renal carcinoma cell lines.

    abstract:BACKGROUND:Improving the treatment of renal cell carcinoma (RCC) will depend on the development of better biomarkers for predicting disease progression and aiding the design of appropriate therapies. One such marker may be fatty acid binding protein 7 (FABP7), also known as B-FABP and BLBP, which is expressed normally ...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-12-31

    authors: Takaoka N,Takayama T,Teratani T,Sugiyama T,Mugiya S,Ozono S

    更新日期:2011-07-19 00:00:00

  • From Gateway to MultiSite Gateway in one recombination event.

    abstract:BACKGROUND:Invitrogen Gateway technology exploits the integrase/att site-specific recombination system for directional cloning of PCR products and the subsequent subcloning into destination vectors. One or three DNA segments can be cloned using Gateway or MultiSite Gateway respectively. A vast number of single-site Gat...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-7-46

    authors: Magnani E,Bartling L,Hake S

    更新日期:2006-12-06 00:00:00

  • Interleukin-4 induction of the CC chemokine TARC (CCL17) in murine macrophages is mediated by multiple STAT6 sites in the TARC gene promoter.

    abstract:BACKGROUND:Macrophages (Mtheta) play a central role in the innate immune response and in the pathology of chronic inflammatory diseases. Macrophages treated with Th2-type cytokines such as Interleukin-4 (IL-4) and Interleukin-13 (IL-13) exhibit an altered phenotype and such alternatively activated macrophages are impor...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-7-45

    authors: Liddiard K,Welch JS,Lozach J,Heinz S,Glass CK,Greaves DR

    更新日期:2006-11-29 00:00:00

  • Checkpoint independence of most DNA replication origins in fission yeast.

    abstract:BACKGROUND:In budding yeast, the replication checkpoint slows progress through S phase by inhibiting replication origin firing. In mammals, the replication checkpoint inhibits both origin firing and replication fork movement. To find out which strategy is employed in the fission yeast, Schizosaccharomyces pombe, we use...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-8-112

    authors: Mickle KL,Ramanathan S,Rosebrock A,Oliva A,Chaudari A,Yompakdee C,Scott D,Leatherwood J,Huberman JA

    更新日期:2007-12-19 00:00:00

  • TRPC1 transcript variants, inefficient nonsense-mediated decay and low up-frameshift-1 in vascular smooth muscle cells.

    abstract:BACKGROUND:Transient Receptor Potential Canonical 1 (TRPC1) is a widely-expressed mammalian cationic channel with functional effects that include stimulation of cardiovascular remodelling. The initial aim of this study was to investigate variation in TRPC1-encoding gene transcripts. RESULTS:Extensive TRPC1 transcript ...

    journal_title:BMC molecular biology

    pub_type: 杂志文章

    doi:10.1186/1471-2199-12-30

    authors: Dedman AM,Majeed Y,Tumova S,Zeng F,Kumar B,Munsch C,Bateson AN,Wittmann J,Jäck HM,Porter KE,Beech DJ

    更新日期:2011-07-12 00:00:00