Evidence for targeting common siRNA hotspots and GC preference by plant Dicer-like proteins.

Abstract:

:Small interfering (si)RNAs isolated from Brassica juncea leaves infected by Turnip mosaic virus (TuMV) were characterized by cloning and sequencing. The TuMV siRNA population was dominated by 21 and 22-nt long species originated mainly from the same siRNA hotspots, indicating operational similarity between the plant Dicer-like (DCL) enzymes. Robust GC bias was observed for TuMV siRNAs versus the virus genome, indicating that DCL was more likely to target GC-rich regions. Furthermore, dicot micro-(mi)RNAs displayed higher GC% than their DCL1 substrate RNAs, implicating that the GC bias may be ancient, therefore may be important for the RNAi technology.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Ho T,Wang H,Pallett D,Dalmay T

doi

10.1016/j.febslet.2007.06.022

subject

Has Abstract

pub_date

2007-07-10 00:00:00

pages

3267-72

issue

17

eissn

0014-5793

issn

1873-3468

pii

S0014-5793(07)00671-0

journal_volume

581

pub_type

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