Abstract:
:In this study, we have identified 876 polymorphism sites in 145 complete or partial genomes of SARS-CoV available in the NCBI GenBank. One hundred and seventy-four of these sites existed in two or more SARS-CoV genome sequences. According to the sequence polymorphism, all SARS-CoVs can be divided into three groups: (I) group 1, animal-origin viruses (such as SARS-CoV SZ1, SZ3, SZ13 and SZ16); (II) group 2, all viruses with clinical origin during first epidemic; and (III) group 3, SARS-CoV GD03T0013. According to 10 special loci, group 2 again can be divided into genotypes C and T, which can be further divided into sub-genotypes C1-C4 and T1-T4. Positive Darwinian selections were identified between any pair of these three groups. Genotype C gives neutral selection. Genotype T, however, shows negative selection. By comparing the death rates of SARS patients in the different regions, it was found that the death rate caused by the viruses of the genotype C was lower than that of the genotype T. SARS-CoVs might originate from an unknown ancestor.
journal_name
FEBS Lettjournal_title
FEBS lettersauthors
Wang ZG,Zheng ZH,Shang L,Li LJ,Cong LM,Feng MG,Luo Y,Cheng SY,Zhang YJ,Ru MG,Wang ZX,Bao QYdoi
10.1016/j.febslet.2005.07.075keywords:
subject
Has Abstractpub_date
2005-09-12 00:00:00pages
4928-36issue
22eissn
0014-5793issn
1873-3468pii
S0014-5793(05)00943-9journal_volume
579pub_type
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