Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria.

Abstract:

:Computational comparative techniques were applied to analysis of the aromatic amino acid regulon in Gram-positive bacteria. A new candidate transcription regulation signal of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and shikimate kinase genes was identified in Streptococcus and Lactococcus species. New T-boxes were found upstream of aromatic amino acid biosynthesis and transport genes in the Bacillus/Clostridium group. The substrate specificity of proteins from the PabA/TrpG family was assigned based on metabolic reconstruction and analysis of regulatory signals and phylogenetic patterns. New candidate tryptophan transporters were identified; their specificity was predicted by analysis of T-box regulatory sites. Comparison of all available genomes shows that regulation of genes of the aromatic amino acid biosynthesis pathway is quite labile and involves at least four regulatory systems, two at the DNA level and two more involving competition of alternative RNA secondary structures for transcription and/or translation regulation at the RNA level.

journal_name

FEMS Microbiol Lett

authors

Panina EM,Vitreschak AG,Mironov AA,Gelfand MS

doi

10.1016/S0378-1097(03)00303-3

keywords:

subject

Has Abstract

pub_date

2003-05-28 00:00:00

pages

211-20

issue

2

eissn

0378-1097

issn

1574-6968

pii

S0378109703003033

journal_volume

222

pub_type

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