The Sp4H deletion may contain a new locus essential for postimplantation development.

Abstract:

:Sp4H is a semi-dominant mutation that maps to mouse chromosome 1. Heterozygous mice exhibit white spotting of the belly, whereas the fate of the homozygous embryos is unknown. We have previously shown that the entire coding region of the Pax3 gene is deleted in the Sp4H mutant. In this study, we have analyzed the fate of the Sp4H homozygous embryos. No Sp4H homozygotes were detected by Southern blot or PCR analysis in 82 E9-E13-day embryos. We have also documented a significant increase in the number of resorption sites in Sp4H heterozygous matings compared to control litters. Sections of the resorption sites (moles) suggest that postimplantation development is arrested prior to gastrulation. We have mapped the extent of the deletion to a maximum of 1.53 +/- 0.6 cM using markers flanking the Pax3 locus. Four anonymous markers, D1Mit215, D1Mit253, D1Mit332, and D1McG156, have been shown to be deleted in the Sp4H mutation. Further nondeleted markers have been used to extend the linkage map of this region. A total of 22 loci were analyzed in a Splotch intraspecific backcross. Using these data and deletion mapping data, we predict the following order of markers: (D1Mit46, Vil)-(D1Mit79)-(D1Mit132, D1McG153)-(D1Mit332)-(D1-McG156, D1Mit253, D1Mit215, Pax3)-(D1Mit134)-(D1Mit8, D1Mit9, D1Mit44, D1Ler3, D1Mit183)-(D1Mit53, D1Mit82, D1Mit182)-(Bcl2). As the deletion is large enough to include other genes, and it seems that deletion of Pax3 is not likely to account for the early death of the embryos, we suggest that another developmentally important gene may be deleted in the Sp4H mouse mutant and that this may be responsible for the early death of the homozygous mutant embryos.

journal_name

Genomics

journal_title

Genomics

authors

Fleming J,Pearce A,Brown SD,Steel KP

doi

10.1006/geno.1996.0267

subject

Has Abstract

pub_date

1996-06-01 00:00:00

pages

205-12

issue

2

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(96)90267-0

journal_volume

34

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Rapid detection of mitochondrial sequence polymorphisms using multiplex solid-phase fluorescent minisequencing.

    abstract::This work describes a novel method, multiplex solid-phase fluorescent minisequencing, for the simultaneous detection of several point mutations and/or small deletions and insertions. The method is applied to the analysis of mitochondrial DNA polymorphisms for the purposes of individual identification. A database of 15...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0247

    authors: Tully G,Sullivan KM,Nixon P,Stones RE,Gill P

    更新日期:1996-05-15 00:00:00

  • Transcriptome profiling and dimorphic expression of sex-related genes in fifth-instar nymphs of Sogatella furcifera, an important rice pest.

    abstract::Sogatella furcifera is an important rice pest. In order to understand the molecular basis of the sex determination in this pest, we performed de novo transcriptome sequencing of six cDNA libraries (three biological replicates) of female and male fifth-instar nymphs. Total 65,199 unigenes were obtained, with an average...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.06.024

    authors: Lin J,He J,Liang A,Wang F

    更新日期:2020-03-01 00:00:00

  • The cloning and nucleotide sequence of human ST2L cDNA.

    abstract::The ST2 gene is a member of the IL-1 receptor family and is hypothesized to be involved in helper T cell function, but its functional ligand and physiological role remain unknown. We have cloned the human ST2L cDNA that encodes a distinct type of membrane-bound ST2 protein. The predicted 556-amino-acid sequence showed...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6269

    authors: Li H,Tago K,Io K,Kuroiwa K,Arai T,Iwahana H,Tominaga S,Yanagisawa K

    更新日期:2000-08-01 00:00:00

  • Reciprocal chromosome painting reveals detailed regions of conserved synteny between the karyotypes of the domestic dog (Canis familiaris) and human.

    abstract::The domestic dog is increasingly being recognized as a useful model for human disease. The aim of this study was to conduct the first detailed whole-genome comparison of human and dog using bidirectional heterologous chromosome painting (reciprocal Zoo-FISH) analysis. We used whole-chromosome paint probes produced fro...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5947

    authors: Breen M,Thomas R,Binns MM,Carter NP,Langford CF

    更新日期:1999-10-15 00:00:00

  • Molecular cloning and chromosomal localization of a pseudogene related to the human acyl-CoA binding protein/diazepam binding inhibitor.

    abstract::The acyl-CoA binding protein (ACBP) and the diazepam binding inhibitor (DBI) or endozepine are independent isolates of a single 86-amino-acid, 10-kDa protein. ACBP/DBI is highly conserved between species and has been identified in several diverse organisms, including human, cow, rat, frog, duck, insects, plants, and y...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80047-p

    authors: Gersuk VH,Rose TM,Todaro GJ

    更新日期:1995-01-20 00:00:00

  • Assignment of the gene for intercellular adhesion molecule-1 (Icam-1) to proximal mouse chromosome 9.

    abstract::Intercellular adhesion molecule-1 (ICAM-1) is an integral membrane protein, a member of the immunoglobulin superfamily, and a ligand for LFA-1, a beta 2 leukocyte integrin. ICAM-1 has a tissue distribution similar to that of the major histocompatibility complex class II antigens and is likely to play a role in inflamm...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90423-c

    authors: Ballantyne CM,Kozak CA,O'Brien WE,Beaudet AL

    更新日期:1991-03-01 00:00:00

  • Physical mapping and YAC contig analysis of the region surrounding Xist on the mouse X chromosome.

    abstract::The Xist sequence has been proposed as a potential candidate for the X-inactivation center based both on its localization within the candidate region for the X-inactivation center in man and mouse and on its unique pattern of expression from the inactive X chromosome. We have cloned 550 kb of DNA surrounding the mouse...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1108

    authors: Heard E,Simmler MC,Larin Z,Rougeulle C,Courtier B,Lehrach H,Avner P

    更新日期:1993-03-01 00:00:00

  • Comparative anatomy of the primate major histocompatibility complex DR subregion: evidence for combinations of DRB genes conserved across species.

    abstract::The class II region of the human major histocompatibility complex (HLA) is made up of three major subregions designated DR, DQ, and DP. With the aim of gaining an insight into the evolution and stability of DR haplotypes, a total of 63 cosmid clones were isolated from the DR subregion (Gogo-DR) of a western lowland go...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(05)80224-1

    authors: Kasahara M,Klein D,Vincek V,Sarapata DE,Klein J

    更新日期:1992-10-01 00:00:00

  • YY1-dependent transcriptional regulation of the human GDAP1 gene.

    abstract::Charcot-Marie-Tooth disease (CMT) is a heritable neurodegenerative condition, some types of which (notably CMT4A) are caused by mutations in the GDAP1 gene that encodes a protein of unknown molecular function implicated in regulation of mitochondrial fission. Here we present for the first time a functional analysis of...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2009.08.014

    authors: Ratajewski M,Pulaski L

    更新日期:2009-12-01 00:00:00

  • Genetic regulation of endotoxin-induced airway disease.

    abstract::To identify novel genes regulating the biologic response to lipopolysaccharide (LPS), we used a combination of quantitative trait locus (QTL) analysis and microarray-based gene expression studies of C57BL/6J x DBA/2J(BXD) F2 and recombinant inbred (RI) mice. A QTL affecting pulmonary TNF-alpha production was identifie...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2003.12.008

    authors: Cook DN,Wang S,Wang Y,Howles GP,Whitehead GS,Berman KG,Church TD,Frank BC,Gaspard RM,Yu Y,Quackenbush J,Schwartz DA

    更新日期:2004-06-01 00:00:00

  • Identification and functional characterization of SOC1-like genes in Pyrus bretschneideri.

    abstract::Flowering is a prerequisite for pear fruit production. Therefore, the development of flower buds and the control of flowering time are important for pear trees. However, the molecular mechanism of pear flowering is unclear. SOC1, a member of MADS-box family, is known as a flowering signal integrator in Arabidopsis. We...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.09.011

    authors: Liu Z,Wu X,Cheng M,Xie Z,Xiong C,Zhang S,Wu J,Wang P

    更新日期:2020-03-01 00:00:00

  • Molecular cloning and characterization of a novel human CC chemokine, SCYA26.

    abstract::By searching the Expressed Sequence Tag database, a full-length cDNA for a novel human CC chemokine was cloned. This cDNA encoded a 94-amino-acid protein with a putative signal peptide of 26 amino acids. The deduced mature protein had the four conserved cysteine residues characteristic of CC chemokines and showed 44% ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5837

    authors: Guo RF,Ward PA,Hu SM,McDuffie JE,Huber-Lang M,Shi MM

    更新日期:1999-06-15 00:00:00

  • A comparative transcriptional map of a region of 250 kb on the human and mouse X chromosome between the G6PD and the FLN1 genes.

    abstract::The transcriptional organization of the region of the mouse X chromosome between the G6pd and the Fln1 genes was studied in detail, and it was compared with the syntenic region of the human chromosome. A cosmid contig of 250 kb was constructed by screening mouse cosmid libraries with probes for human genes and with wh...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1164

    authors: Rivella S,Tamanini F,Bione S,Mancini M,Herman G,Chatterjee A,Maestrini E,Toniolo D

    更新日期:1995-08-10 00:00:00

  • Genome-wide analysis of expression modes and DNA methylation status at sense-antisense transcript loci in mouse.

    abstract::The functionality of sense-antisense transcripts (SATs), although widespread throughout the mammalian genome, is largely unknown. Here, we analyzed the SATs expression and its associated promoter DNA methylation status by surveying 12 tissues of mice to gain insights into the relationship between expression and DNA me...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2010.08.007

    authors: Watanabe Y,Numata K,Murata S,Osada Y,Saito R,Nakaoka H,Yamamoto N,Watanabe K,Kato H,Abe K,Kiyosawa H

    更新日期:2010-12-01 00:00:00

  • The gene for murine CTP:phosphocholine cytidylyltransferase (Ctpct) is located on mouse chromosome 16.

    abstract::CTP:phosphocholine cytidylyltransferase is the rate-controlling enzyme in phosphatidylcholine biosynthesis and is essential for the survival of eukaryotic cells. The murine cDNA for the cytidylyltransferase was cloned and sequenced. A genomic clone was isolated and the chromosomal location of the Ctpct locus determine...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(05)80377-5

    authors: Rutherford MS,Rock CO,Jenkins NA,Gilbert DJ,Tessner TG,Copeland NG,Jackowski S

    更新日期:1993-12-01 00:00:00

  • Transcriptome sequencing of Chinese and Caucasian population identifies ethnic-associated differential transcript abundance of heterogeneous nuclear ribonucleoprotein K (hnRNPK).

    abstract::Gene expression variations (GEV) among different ethnic groups have been a subject matter for extensive study. Relatively less known is the extent of alternative splicing variations (ASV) in the context of ethnicity. We conducted a transcriptome sequencing study of 20 lymphoblastoid cell lines obtained from Caucasian ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2013.12.005

    authors: Li JW,Lai KP,Ching AK,Chan TF

    更新日期:2014-01-01 00:00:00

  • Novel methodology for the detection of chromosome 21-specific alpha-satellite DNA sequences.

    abstract::We present a novel method, based on the hybridization of allele-specific oligonucleotide probes, that allows the specific detection of chromosome 21 alpha-satellite sequences. Absence of informative polymorphic markers from the centromeric region of chromosome 21 has constituted one of the difficulties in studying the...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5786

    authors: Maratou K,Siddique Y,Kessling AM,Davies GE

    更新日期:1999-05-01 00:00:00

  • Second-generation approach to the construction of yeast artificial-chromosome libraries.

    abstract::We describe an improved method for construction of yeast artificial-chromosome (YAC) libraries that contain large inserts of foreign DNA. The procedure consists of seven steps: (i) preparation of human DNA in agarose beads; (ii) partial digestion of the DNA with EcoRI; (iii) electrophoretic elimination of the smaller ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90285-3

    authors: Imai T,Olson MV

    更新日期:1990-10-01 00:00:00

  • Human indolethylamine N-methyltransferase: cDNA cloning and expression, gene cloning, and chromosomal localization.

    abstract::Indolethylamine N-methyltransferase (INMT) catalyzes the N-methylation of tryptamine and structurally related compounds. We recently cloned and characterized the rabbit INMT cDNA and gene as a step toward cloning the cDNA and gene for this enzyme in humans. We have now used a PCR-based approach to clone a human INMT c...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5960

    authors: Thompson MA,Moon E,Kim UJ,Xu J,Siciliano MJ,Weinshilboum RM

    更新日期:1999-11-01 00:00:00

  • CLONEPLACER: a software tool for simulating contig formation for ordered shotgun sequencing.

    abstract::This communication describes a software tool that enables one to simulate large-scale regional mapping using an ordered shotgun sequencing approach. The analysis routines that are provided yield an estimate of the depth of coverage of the physical map, the largest contig formed, and the number of gaps remaining at any...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80057-s

    authors: Singh GB,Krawetz SA

    更新日期:1995-01-20 00:00:00

  • The gene encoding human TFE3, a transcription factor that binds the immunoglobulin heavy-chain enhancer, maps to Xp11.22.

    abstract::TFE3, a member of the helix-loop-helix family of transcription factors, binds to the microE3 motif of the immunoglobulin heavy-chain enhancer and is expressed in many cell types. We have localized human TFE3 to the proximal short arm of the X chromosome using a somatic cell hybrid panel. A frequent RsaI RFLP detected ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90145-5

    authors: Henthorn PS,Stewart CC,Kadesch T,Puck JM

    更新日期:1991-10-01 00:00:00

  • Rapid restriction mapping of cosmids by sequence-specific triple-helix-mediated affinity capture.

    abstract::A simple and rapid strategy for restriction mapping based on sequence-specific triple-helix affinity capture (TAC) was developed. The strategy was applied to the analysis of cosmid clones by the construction of a new cosmid vector, ScosTriplex-II, containing two different triple-helix-forming sequences flanking the cl...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0030

    authors: Ji H,Francisco T,Smith LM,Guilfoyle RA

    更新日期:1996-01-15 00:00:00

  • YAC contig organization and CpG island analysis in Xq28.

    abstract::One hundred nineteen YACs were assembled into 6 contigs spanning about 7.1 Mb of Xq28. The contigs were formatted with 65 STSs and 136 hybridization probes and were extensive enough to be aligned and oriented by published genetic linkage and somatic cell hybrid panel data. Selected YACs from the entire region were map...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1592

    authors: Palmieri G,Romano G,Ciccodicola A,Casamassimi A,Campanile C,Esposito T,Cappa V,Lania A,Johnson S,Reinbold R

    更新日期:1994-11-01 00:00:00

  • Dysregulation in the expression of (lncRNA-TSIX, TP53INP2 mRNA, miRNA-1283) in spinal cord injury.

    abstract:AIM:The objective of this study is to examine the alterations in the levels of expression of serum lncRNA-TSIX, TP53INP2 mRNA, miRNA-1283 in spinal cord injured (SCI) patients versus healthy control. METHOD:The expression of the selected RNAs in the sera was determined in 23 patients suffering from acute spinal cord i...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.06.018

    authors: Salah SMM,Matboli M,Nasser HE,Abdelnaiem IA,Shafei AE,El-Asmer MF

    更新日期:2020-09-01 00:00:00

  • Genetic manipulations in crops: Challenges and opportunities.

    abstract::An alarming increase in the human population necessitates doubling the world food production in the next few decades. Although a number of possible biotechnological measures are under consideration, central to these efforts is the development of transgenic crops to produce more food, and the traits with which plants c...

    journal_title:Genomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.ygeno.2017.07.007

    authors: Ahmad N,Mukhtar Z

    更新日期:2017-10-01 00:00:00

  • The gene mutated in cocoa mice, carrying a defect of organelle biogenesis, is a homologue of the human Hermansky-Pudlak syndrome-3 gene.

    abstract::Hermansky-Pudlak syndrome (HPS) is a group of human disorders of organelle biogenesis characterized by defective synthesis of melanosomes, lysosomes, and platelet dense granules. In the mouse, at least 15 loci are associated with mutant phenotypes similar to human HPS. We have identified the gene mutated in cocoa (coa...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6644

    authors: Suzuki T,Li W,Zhang Q,Novak EK,Sviderskaya EV,Wilson A,Bennett DC,Roe BA,Swank RT,Spritz RA

    更新日期:2001-11-01 00:00:00

  • High-resolution mapping of D16led-1, Gart, Gas-4, Cbr, Pcp-4, and Erg on distal mouse chromosome 16.

    abstract::More than 500 backcross progeny from four intersubspecific backcrosses were typed for six markers on distal mouse chromosome 16. Five of these represented genes that mapped within the Sod-1 to Ets-2 interval, which was shown previously to contain the weaver (wv) gene. The map order, including previously mapped referen...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1336

    authors: Mjaatvedt AE,Citron MP,Reeves RH

    更新日期:1993-08-01 00:00:00

  • Isolation and regional localization of 35 unique anonymous DNA markers for human chromosome 22.

    abstract::Thirty-five new, unique, DNA probes have been isolated and each has been assigned to one of five regions on chromosome 22. The distribution of probes along the chromosome is what would be expected based on the estimated size of each region with the exception of the short arm (22p). RFLP analysis was performed using 13...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90190-p

    authors: Budarf ML,McDermid HE,Sellinger B,Emanuel BS

    更新日期:1991-08-01 00:00:00

  • The mouse Laf4 gene: exon/intron organization, cDNA sequence, alternative splicing, and expression during central nervous system development.

    abstract::The cerebral cortex is a tissue with a high degree of neuronal diversity. It consists of six cell layers with a unique set of neuronal subtypes. A crucial step in the process of cortical differentiation is the transition from a mitotically active neuroblast to a postmitotic young neuron. To identify genes involved in ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2002.6796

    authors: Britanova O,Lukyanov S,Gruss P,Tarabykin V

    更新日期:2002-07-01 00:00:00

  • An efficient method for selecting unique-sequence clones from DNA libraries and its application to fluorescent staining of human chromosome 21 using in situ hybridization.

    abstract::This paper describes an efficient procedure for selecting large numbers of unique-sequence or very low repeat-sequence probes from recombinant phage libraries. Probes were selected from the Charon 21A library LL21NS02 (made from DNA from human chromosome 21) in a multistep process in which (1) inserts from LL21NS02 we...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90092-x

    authors: Fuscoe JC,Collins CC,Pinkel D,Gray JW

    更新日期:1989-07-01 00:00:00