Abstract:
:Sogatella furcifera is an important rice pest. In order to understand the molecular basis of the sex determination in this pest, we performed de novo transcriptome sequencing of six cDNA libraries (three biological replicates) of female and male fifth-instar nymphs. Total 65,199 unigenes were obtained, with an average length of 971.5 bp and N50 length of 1708 bp. 20,287 open reading frames (ORFs) were predicted and annotated. Total 1019 differentially expressed genes with 873 upregulated and 146 downregulated were found in male compared to female. Total 164 sex-determining genes were identified, including the key sex-determining genes in fruit flies, such as Sxl, tra, dsx, etc. It implied that the sex determination mechanisms of S. furcifera may be the same as that of fruit flies. This study provided transcriptome resource as a fundamental support for future functional studies to elucidate the sex determination regulatory networks governing sexual dimorphism of S. furcifera.
journal_name
Genomicsjournal_title
Genomicsauthors
Lin J,He J,Liang A,Wang Fdoi
10.1016/j.ygeno.2019.06.024subject
Has Abstractpub_date
2020-03-01 00:00:00pages
1105-1111issue
2eissn
0888-7543issn
1089-8646pii
S0888-7543(19)30277-0journal_volume
112pub_type
杂志文章相关文献
GENOMICS文献大全abstract::Blood-based epigenome-wide association studies that aim at comparing CpG methylation between colorectal cancer (CRC) patients and controls can lead to the discovery of diagnostic or prognostic biomarkers. Numerous confounders can lead to spurious associations. We aimed to see if 5-fluorouracil (5-FU)/leucovorin chemot...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2015.09.003
更新日期:2015-12-01 00:00:00
abstract::Hes2 encodes a mammalian basic helix-loop-helix transcriptional repressor homologous to the products of Drosophila hairy and Enhancer of split. Here, we isolated and characterized the mouse Hes2 gene. This gene consists of four exons, and all the introns are located within the protein-coding region at positions homolo...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1998.5213
更新日期:1998-04-01 00:00:00
abstract::Members of the apolipoprotein gene cluster (APOA1/C3/A4/A5) on human chromosome 11q23 play an important role in lipid metabolism. Polymorphisms in both APOA5 and APOC3 are strongly associated with plasma triglyceride concentrations. The close genomic locations of these two genes as well as their functional similarity ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2003.11.016
更新日期:2004-05-01 00:00:00
abstract::Understanding differences in the repertoire of orthologous gene pairs is vital for interpretation of pharmacological and physiological experiments if conclusions are conveyed between species. Here we present a comprehensive dataset for G protein-coupled receptors (GPCRs) in both human and mouse with a phylogenetic roa...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2006.04.001
更新日期:2006-09-01 00:00:00
abstract::A human clone corresponding to the gene for the DNA-binding factor LFB3, a protein highly homologous to the liver-specific transcription factor LFB1, has been isolated and partially sequenced. This gene is designated TCF2. Oligonucleotide primers have been designed for LFB3 and used to amplify specifically the human g...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(90)90239-q
更新日期:1990-09-01 00:00:00
abstract::p26, a small heat shock protein, is thought to protect Artemia embryos from stress during encystment and diapause. Full-length p26 cDNAs were compared and used to determine phylogenetic relationships between several Artemia species. The alpha-crystallin domain of p26 was the most conserved region of the protein and p2...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2006.02.008
更新日期:2006-08-01 00:00:00
abstract::Type V collagen is a fibrillar collagen that is widely distributed in tissues as a minor component of extracellular matrix and is usually composed of one pro alpha 2 (V) and two pro alpha 1 (V) chains. In this report, recently isolated cDNA and genomic clones, which encode the pro alpha 1 (V) chain, are used as probes...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(92)90320-r
更新日期:1992-04-01 00:00:00
abstract::It is usually assumed that co-expressed genes suggest co-regulation in the underlying regulatory network. Determining sets of co-expressed genes is an important task, based on some criteria of similarity. This task is usually performed by clustering algorithms, where the genes are clustered into meaningful groups base...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2017.06.009
更新日期:2017-10-01 00:00:00
abstract::Neogenin was first identified in the chick embryo, and like a number of cell surface proteins of the immunoglobulin (Ig) superfamily, including N-CAM and L1 (generally called cell adhesion molecules or CAMs), it is expressed on growing nerve cells in the developing nervous system of vertebrate embryos. Neogenin is als...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1997.4688
更新日期:1997-05-01 00:00:00
abstract::To identify novel genes regulating the biologic response to lipopolysaccharide (LPS), we used a combination of quantitative trait locus (QTL) analysis and microarray-based gene expression studies of C57BL/6J x DBA/2J(BXD) F2 and recombinant inbred (RI) mice. A QTL affecting pulmonary TNF-alpha production was identifie...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2003.12.008
更新日期:2004-06-01 00:00:00
abstract::Zebrafish transgenesis is a powerful and increasingly common strategy to assay vertebrate transcriptional regulatory control. Several challenges remain, however, to the broader application of this technique; they include increasing the rate with which transgenes can be analyzed and maximizing the informational value o...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2010.02.011
更新日期:2010-06-01 00:00:00
abstract::Alternative splicing is an important cellular mechanism that increases the diversity of gene products. The number of alternatively spliced genes reported so far in plants is much smaller than that in mammals, but is increasing as a result of the explosive growth of available EST and genomic sequences. We have searched...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/s0888-7543(03)00204-0
更新日期:2003-12-01 00:00:00
abstract::Synucleins are a family of small intracellular proteins expressed mainly in the nervous system. The involvement of synucleins in neurodegeneration and malignancy has been demonstrated, but the physiological functions of these proteins remain elusive. Further studies including generation of animals with modified persyn...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1998.5674
更新日期:1999-03-01 00:00:00
abstract::The recessive male sterility and histoincompatibility (mshi) mutation in the mouse generates pleiotropic effects on histocompatibility and male reproduction, while female mutants appear to be reproductively normal. We have mapped the mshi mutation to mouse Chromosome (Chr) 10 by analysis of 126 progeny from an intrasp...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1996.4475
更新日期:1997-01-01 00:00:00
abstract::A novel gene, TEGT (testis enhanced gene transcript), has been identified in humans. It does not belong to any known gene family of vertebrates. The deduced amino acid sequence of the gene and a bacterial protein of unknown function show low but significant homology and very similar hydrophobicity profiles. Two differ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1995.1145
更新日期:1995-07-20 00:00:00
abstract::Single nucleotide polymorphism (SNP) interactions can explain the missing heritability of common complex diseases. Many interaction detection methods have been proposed in genome-wide association studies, and they can be divided into two types: population-based and family-based. Compared with population-based methods,...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2018.07.014
更新日期:2019-09-01 00:00:00
abstract::Gene expression variations (GEV) among different ethnic groups have been a subject matter for extensive study. Relatively less known is the extent of alternative splicing variations (ASV) in the context of ethnicity. We conducted a transcriptome sequencing study of 20 lymphoblastoid cell lines obtained from Caucasian ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2013.12.005
更新日期:2014-01-01 00:00:00
abstract::We employed cDNA representational difference analysis (RDA) with human-mouse somatic hybrid cells containing human chromosome 17 and obtained several cDNA clones specific for this chromosome. A cDNA library from PHA-stimulated T cells was screened with unknown cDNA clones obtained by RDA as probes. Subsequently, 1 com...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1997.4729
更新日期:1997-06-01 00:00:00
abstract::DNA methylation is a major epigenetic modification of the genome that affects basic biological functions, such as gene expression and cell development. We used the human genome sequences and the DNA methylation data that are available in order to establish a map of the levels of GC and methylation in isochores. We als...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2009.09.006
更新日期:2010-01-01 00:00:00
abstract::TM4SF11 is only 102 kb from the chemokine gene cluster composed of SCYA22, SCYD1, and SCYA17 on chromosome 16q13. CKLF maps on chromosome 16q22. CKLFs have some characteristics associated with the CCL22/MDC, CX3CL1/fractalkine, CCL17/TARC, and TM4SF proteins. Bioinformatics based on CKLF2 cDNA and protein sequences in...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/s0888-7543(03)00095-8
更新日期:2003-06-01 00:00:00
abstract::An exon representing a novel clathrin heavy chain gene (CLTCL) was isolated during gene identification studies and transcription mapping of human chromosome 22. Isolation and sequencing of cDNA clones corresponding to this exon revealed extensive similarity of the predicted amino acid sequence of this gene product to ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1996.0386
更新日期:1996-08-01 00:00:00
abstract::The sequence of the gorilla alpha-fetoprotein gene, including 869 base pairs of the 5' flanking region and 4892 base pairs of the 3' flanking region (24,607 in total), was determined from two overlapping lambda phage clones. The sequence extends 18,846 base pairs from the Cap site to the polyadenylation site, and it r...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(91)90221-y
更新日期:1991-01-01 00:00:00
abstract::We have used radiation hybrid (RH) mapping and pulsed-field gel electrophoresis (PFGE) to determine the order and positions of 28 DNA markers from the distal region of the long arm of human chromosome 21. The maps generated by these two methods are in good agreement. This study, combined with that of D. R. Cox et al. ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(91)90216-2
更新日期:1991-01-01 00:00:00
abstract::A mouse inositol polyphosphate 1-phosphatase (Inpp1) cDNA fragment (348 bp) was amplified by means of the polymerase chain reaction using a mouse cDNA library as template with primers designed from published human and bovine cDNA sequences. We isolated a 1623-bp full-length Inpp1 cDNA from a mouse brain cDNA library u...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1995.0030
更新日期:1995-11-20 00:00:00
abstract::Although 338 genetic loci and 1 or more candidate tumor suppressor genes have been assigned to chromosome 6, the physical and genetic map of this chromosome is at a very preliminary stage. In this study, we have performed subregional localization of 20 single-copy DNA sequences previously assigned to chromosome 6 usin...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1993.1206
更新日期:1993-05-01 00:00:00
abstract::We have characterized three terminal deletions of the long arm of the X chromosome. Southern analysis using Xq27/q28 probes suggests that two of the deletions have breakpoints near the fragile site at Xq27.3. Flow karyotype analysis provides an estimate of 12 X 10(6) bp for the size of the deleted region. We have not ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(87)90028-0
更新日期:1987-12-01 00:00:00
abstract::During the course of systematic sequence tag analysis of clones isolated from an adult testis cDNA library, clones 296 and 576 were found to detect 71-74% sequence identity to the guinea pig sperm surface protein PH-20. This surface protein is involved in sperm-egg adhesion in the guinea pig. Nucleotide sequence for 1...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1995.9931
更新日期:1995-10-10 00:00:00
abstract::Mammalian sex chromosomes are the remnants of an ancient autosomal pair present in the ancestral mammalian karyotype. As a consequence of random decay and chromosome rearrangements over evolutionary time, Y chromosome gene repertoires differ between eutherian lineages. To investigate the gene repertoire and transcript...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2008.06.012
更新日期:2008-11-01 00:00:00
abstract::Transport proteins have essential functions in the uptake of neurotransmitters and neuromodulators. We have mapped the gene encoding the taurine transporter, Taut, to the central region of mouse chromosome 6. Analysis of a cross segregating the neurological mutant mnd2 excluded Taut as a candidate gene for this closel...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(95)80146-d
更新日期:1995-01-01 00:00:00
abstract::The murine arylsulfatase A (ARSA) gene and cDNA have been cloned and sequenced. The gene is 3.8 kb long and contains eight exons. All intron/exon splice junctions conform to the GT/AG consensus sequence. The genomic structure is similar to that of the human gene. One major RNA species of 3.2 kb is transcribed. This RN...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1994.1055
更新日期:1994-01-15 00:00:00