Abstract:
:Understanding differences in the repertoire of orthologous gene pairs is vital for interpretation of pharmacological and physiological experiments if conclusions are conveyed between species. Here we present a comprehensive dataset for G protein-coupled receptors (GPCRs) in both human and mouse with a phylogenetic road map. We performed systematic searches applying several search tools such as BLAST, BLAT, and Hidden Markov models and searches in literature data. We aimed to gather a full-length version of each human or mouse GPCR in only one copy referring to a single chromosomal position. Moreover, we performed detailed phylogenetic analysis of the transmembrane regions of the receptors to establish accurate orthologous pairs. The results show the identity of 495 mouse and 400 human functional nonolfactory GPCRs. Overall, 329 of the receptors are found in one-to-one orthologous pairs, while 119 mouse and 31 human receptors originate from species-specific expansions or deletions. The average percentage similarity of the orthologue pairs is 85%, while it varies between the main GRAFS families from an average of 59 to 94%. The orthologous pairs for the lipid-binding GPCRs had the lowest levels of conservation, while the biogenic amines had highest levels of conservation. Moreover, we searched for expressed sequence tags (ESTs) and identified more than 17,000 ESTs matching GPCRs in mouse and human, providing information about their expression patterns. On the whole, this is the most comprehensive study of the gene repertoire that codes for human and mouse GPCRs. The datasets are available for downloading.
journal_name
Genomicsjournal_title
Genomicsauthors
Bjarnadóttir TK,Gloriam DE,Hellstrand SH,Kristiansson H,Fredriksson R,Schiöth HBdoi
10.1016/j.ygeno.2006.04.001subject
Has Abstractpub_date
2006-09-01 00:00:00pages
263-73issue
3eissn
0888-7543issn
1089-8646pii
S0888-7543(06)00105-4journal_volume
88pub_type
杂志文章相关文献
GENOMICS文献大全abstract::Data from family studies demonstrating RH:MYCL linkage (zeta = 4.07 at theta = 0.09) in paternal meioses are presented. Although positive, MYCL:PGM1 lods are not of the magnitude of those for RH:MYCL. Taken together, these results are consistent with the physical assignment of MYCL to 1p32. Furthermore, evidence to su...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(88)90097-3
更新日期:1988-02-01 00:00:00
abstract::Familial hypertrophic cardiomyopathy (HCM) is a primary myocardial disease with a prevalence of 1 in 500 in human beings. Causative mutations have been identified in several sarcomeric genes, including the cardiac myosin binding protein C (MYBPC3) gene. Heritable HCM also exists in a large-animal model, the cat, and w...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2007.04.007
更新日期:2007-08-01 00:00:00
abstract::Although 338 genetic loci and 1 or more candidate tumor suppressor genes have been assigned to chromosome 6, the physical and genetic map of this chromosome is at a very preliminary stage. In this study, we have performed subregional localization of 20 single-copy DNA sequences previously assigned to chromosome 6 usin...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1993.1206
更新日期:1993-05-01 00:00:00
abstract::Balanced reciprocal translocation carriers are usually phenotypically normal but are at an increased risk of infertility, recurrent miscarriage or having affected children. Preimplantation genetic testing on chromosomal structural rearrangement (PGT-SR) offers a way to screen against unbalanced embryos. Here, we demon...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2019.04.001
更新日期:2020-01-01 00:00:00
abstract::Monocyte chemotactic proteins (MCPs) form a subfamily of chemokines that recruit leukocytes to sites of inflammation and that may contribute to tumor-associated leukocyte infiltration and to the antiviral state against HIV infection. With the use of degenerate primers that were based on CC chemokine consensus sequence...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1996.4594
更新日期:1997-03-01 00:00:00
abstract::A genetic map of nine loci defined by polymorphic DNA markers was created using a single cross of F344/N and LEW/N rats. The markers contained polymorphic simple sequence repeats identified in five genes, renin (Ren), cardiac troponin T (Tnnt3), synaptotagmin (Syt2), Na+,K(+)-ATPase catalytic subunit (Atp1a2), and the...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1993.1466
更新日期:1993-11-01 00:00:00
abstract::Mutations in the DKC1 gene are responsible for causing X-linked recessive dyskeratosis congenita (DKC) and a more severe allelic variant of the disease, Hoyeraal-Hreidarsson syndrome. Both diseases are characterized by progressive and fatal bone marrow failure. The nucleolar protein dyskerin is the pseudouridine synth...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.2000.6227
更新日期:2000-07-15 00:00:00
abstract::Glaucoma is a very common disorder of the eye wherein the disturbance of the structural or functional integrity of the optic nerve causes characteristic atrophic changes in the optic nerve, which may lead to specific visual field defects over time. Primary open angle glaucoma (POAG) is most frequent among the three pr...
journal_title:Genomics
pub_type: 杂志文章,评审
doi:10.1016/j.ygeno.2016.11.003
更新日期:2017-01-01 00:00:00
abstract::The single functional mouse gene for MIF (macrophage migration inhibitory factor) has been cloned from a P1 library, and its exon/intron structure determined and shown to resemble that of the human gene. The gene was mapped to chromosome 10 using two multilocus crosses between laboratory strains and either Mus musculu...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1995.1070
更新日期:1995-06-10 00:00:00
abstract::Sex determination in humans is mediated through the expression of a testis-determining gene on the Y chromosome. In humans, a candidate gene for the testis-determining factor (TDF) that encodes a protein with a putative DNA-binding motif and has been isolated is termed SRY. Here we describe an XY sex-reversed female w...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(92)90164-n
更新日期:1992-07-01 00:00:00
abstract::We have constructed two YAC contigs in the Xp11.23-p11.22 interval of the human X chromosome, a region that was previously poorly characterized. One contig, of at least 1.4 Mb, links the pseudogene OATL1 to the genes GATA1, TFE3, and SYP and also contains loci implicated in Wiskott-Aldrich syndrome and synovial sarcom...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1995.9976
更新日期:1995-09-20 00:00:00
abstract::The recent release of the domestic dog genome provides us with an ideal opportunity to investigate dog-specific genomic features. In this study, we performed a systematic analysis of CpG islands (CGIs), which are often considered gene markers, in the dog genome. Relative to the human and mouse genomes, the dog genome ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2009.04.007
更新日期:2009-08-01 00:00:00
abstract::Regions of DNA homology between human and marmoset (Callithrix jacchus) chromosomes have been demonstrated using fluorescence in situ hybridization. All 24 chromosome paints and two centromere repeat sequences from Homo sapiens (HSA) have been annealed to previously G-banded metaphase spreads of Callithrix jacchus. Al...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1996.0186
更新日期:1996-04-15 00:00:00
abstract::The sensing of extracellular calcium is a general paradigm for regulating diverse cellular functions in many tissues. A calcium-sensing receptor (Casr) belonging to the metabotropic glutamate family of G-protein-coupled receptors (GPCR) that transduces the effects of extracellular calcium in the parathyroid gland as w...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1997.4943
更新日期:1997-10-15 00:00:00
abstract::Transcobalamin I (TCI) is a vitamin B12 binding protein that is found in the secondary granules of mature neutrophils. The expression of the gene for TCI (TCN1) within neutrophils has been shown to be restricted to the later stages of myeloid development and can therefore be used as a marker for granulocyte differenti...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(92)90435-u
更新日期:1992-03-01 00:00:00
abstract:UNLABELLED:Pancreatic cancer is one of the most aggressive malignant tumors, mainly due to an aggressive metastasis spreading. In recent years, circulating tumor cells became associated to tumor metastasis. Little is known about their expression profiles. The aim of this study was to develop a complete workflow making ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2015.02.003
更新日期:2015-07-01 00:00:00
abstract::Cell wall lytic enzymes play key roles in biochemical, morphological, genetic research and industry fields. To save time and labor costs, bioinformatic methods are usually adopted to narrow the scope of in vitro experimentation. In this paper, we established a novel machine learning (support vector machine) based iden...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2020.08.015
更新日期:2020-11-01 00:00:00
abstract::We report monozygotic twin girls with syndromic intellectual disability who underwent exome sequencing but with negative pathogenic variants. To search for variants that are unrecognized by exome sequencing, high-fidelity long-read genome sequencing (HiFi LR-GS) was applied. A 12-kb copy-neutral inversion was precisel...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2020.10.038
更新日期:2020-11-04 00:00:00
abstract::Linkage of the gene responsible for an X-linked early onset parkinsonism disorder with mental retardation (McKusick 311510) to DNA probes that detect restriction fragment length polymorphisms is described. The disease gene is linked to the F8C gene, and to DNA probes detecting polymorphic loci DXS52, DXS15, DXS134, an...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(91)90363-j
更新日期:1991-04-01 00:00:00
abstract::Abnormal histone modifications (HMs) and transcription factors (TFs) can alter the expression of cancer-related genes to promote tumorigenesis. We studied the variations of 11 HMs and 2 TFs in human breast cancer cells (MCF-7) compared to human normal mammary epithelial cells (HMEC), and the effects of HMs/TFs in vari...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2019.05.026
更新日期:2020-01-01 00:00:00
abstract::Physical maps of the human genome are being constructed by many groups using a mapping strategy that relies on the development of sequence-tagged sites (STSs). Thousands of physically mapped STSs, representing hundreds of kilobases (kb) of unique human DNA sequence, have been generated by these efforts. Since sequence...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1996.0019
更新日期:1996-01-01 00:00:00
abstract::Human myosin light chain-2 (MYL2) is an important protein involved in the regulation of myosin ATPase activity in smooth muscle. In cardiac muscle, the precise role of MYL2 is not well understood; however, an increase in ventricular MYL2 is observed during myocardial hypertrophy in cardiac patients with valve stenosis...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(92)90161-k
更新日期:1992-07-01 00:00:00
abstract::The Xist sequence has been proposed as a potential candidate for the X-inactivation center based both on its localization within the candidate region for the X-inactivation center in man and mouse and on its unique pattern of expression from the inactive X chromosome. We have cloned 550 kb of DNA surrounding the mouse...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.1993.1108
更新日期:1993-03-01 00:00:00
abstract::Full-length coding sequences of two novel human cadherin cDNAs were obtained by sequence analysis of several EST clones and 5' and 3' rapid amplification of cDNA ends (RACE) products. Exons for a third cDNA sequence were identified in a public-domain human genomic sequence, and the coding sequence was completed by 3' ...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.2000.6305
更新日期:2000-09-15 00:00:00
abstract::For diseases in which thrombosis plays a pivotal role, such as virus-induced fulminant hepatitis, fetal loss syndrome, and xenograft rejection, the major procoagulant has remained elusive. Here we describe the isolation and functional expression of a distinct human prothrombinase, termed FGL2. The murine fgl2 gene pro...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.2000.6444
更新日期:2001-02-01 00:00:00
abstract::For genetic linkage analysis of Japanese flounder, 160 doubled haploids (DH) were artificially produced using mitotic gynogenesis and were genotyped for 458 simple sequence repeat (SSR) markers, 101 of which show distortional segregation. The genetic linkage map was constructed by modifying recombination fractions bet...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2017.08.006
更新日期:2018-01-01 00:00:00
abstract::We investigated a family with a duplication, dup(X)q26-q27, that was present in two brothers, their mother, and their maternal grandmother. The brothers carrying the duplication displayed spina bifida and panhypopituitarism, whereas a third healthy brother inherited the normal X chromosome. Preferential inactivation o...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.2000.6327
更新日期:2000-10-15 00:00:00
abstract::Syndactyly in Holstein cattle is an autosomal recessive abnormality characterized by the fusion of the functional digits. This disorder has been previously mapped to the telomeric part of bovine chromosome 15. Here, we describe the fine-mapping of syndactyly in Holstein cattle to a 3.5-Mb critical interval using a com...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/j.ygeno.2006.05.007
更新日期:2006-11-01 00:00:00
abstract::A NotI linking library constructed from flow-sorted human chromosome 17 material was screened to aid in construction of a long-range restriction map of the Miller-Dieker chromosome region (MDCR) in 17p13.3. A total of 66 clones were mapped to one of eight regions of chromosome 17 using a somatic cell hybrid panel, and...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1016/0888-7543(90)90549-a
更新日期:1990-06-01 00:00:00
abstract::Unbalanced chromosome translocations with breakpoints around 8p12, resulting in loss of distal 8p, are common in carcinomas. We have mapped the 8p12 breakpoints in three breast cancer cell lines, T-47D, MDA-MB-361, and ZR-75-1, using YACs and PACs between D8S540 and D8S255 by fluorescence in situ hybridization. All th...
journal_title:Genomics
pub_type: 杂志文章
doi:10.1006/geno.2000.6178
更新日期:2000-05-15 00:00:00