Expression analysis, genomic structure, and mapping to 7q31 of the human sperm adhesion molecule gene SPAM1.

Abstract:

:During the course of systematic sequence tag analysis of clones isolated from an adult testis cDNA library, clones 296 and 576 were found to detect 71-74% sequence identity to the guinea pig sperm surface protein PH-20. This surface protein is involved in sperm-egg adhesion in the guinea pig. Nucleotide sequence for 1919 bp of human DNA from a series of overlapping cDNA clones isolated from a testis cDNA library confirmed the sequence identity within a 1527-bp open reading frame to be 71-74% to the guinea pig gene and the similarity to be 60% for the predicted protein of 509 amino acids. Southern blot analysis of human genomic DNA and DNA from somatic cell hybrids indicates that the gene (SPAM1) is unique and does not form part of a larger family and that it maps to chromosome 7. Fluorescence in situ hybridization with yeast artificial chromosome (YAC) clones isolated from the CEPH megaYAC library has refined this localization to 7q31. PCR analysis of genomic DNA and YAC clone DNA has shown that the 1919 bp of the gene that has been cloned covers approximately 11 kb of genomic DNA and is encoded by at least 4 exons. Northern analysis of poly(A)+ mRNA from a range of 16 human tissues has demonstrated that expression of the gene as a single 2.4-kb transcript is strictly limited to the testis.

journal_name

Genomics

journal_title

Genomics

authors

Jones MH,Davey PM,Aplin H,Affara NA

doi

10.1006/geno.1995.9931

subject

Has Abstract

pub_date

1995-10-10 00:00:00

pages

796-800

issue

3

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(85)79931-4

journal_volume

29

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • A YAC contig joining the desmocollin and desmoglein loci on human chromosome 18 and ordering of the desmocollin genes.

    abstract::The desmocollins and desmogleins are members of the cadherin family of adhesive proteins present in the desmosome type of cell-cell junction. All of the known desmoglein and desmocollin isoforms, which have differing tissue and developmental distributions, are coded by very closely linked genes at 18q12.1. We have pre...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4718

    authors: Cowley CM,Simrak D,Marsden MD,King IA,Arnemann J,Buxton RS

    更新日期:1997-06-01 00:00:00

  • Physical and transcriptional map of a 311-kb segment of chromosome 18q21, a candidate lung tumor suppressor locus.

    abstract::Here, we report the complete genomic sequence and the characterization of the 311-kb region of 18q21, a candidate tumor suppressor locus containing a region of homozygous deletion in a lung cancer cell line, Ma29. This region contained two known genes, SMAD4 and ME2 (mitochondrial malate oxydoreductase), and two novel...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6454

    authors: Yanaihara N,Kohno T,Takakura S,Takei K,Otsuka A,Sunaga N,Takahashi M,Yamazaki M,Tashiro H,Fukuzumi Y,Fujimori Y,Hagiwara K,Tanaka T,Yokota J

    更新日期:2001-03-01 00:00:00

  • Genomic structure and chromosomal localization of the mouse persyn gene.

    abstract::Synucleins are a family of small intracellular proteins expressed mainly in the nervous system. The involvement of synucleins in neurodegeneration and malignancy has been demonstrated, but the physiological functions of these proteins remain elusive. Further studies including generation of animals with modified persyn...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5674

    authors: Alimova-Kost MV,Ninkina NN,Imreh S,Gnuchev NV,Adu J,Davies AM,Buchman VL

    更新日期:1999-03-01 00:00:00

  • Genomic structure of the EWS gene and its relationship to EWSR1, a site of tumor-associated chromosome translocation.

    abstract::The EWS gene has been identified based on its location at the chromosome 22 breakpoint of the t(11;22)(q24;q12) translocation that characterizes Ewing sarcoma and related neuroectodermal tumors. The EWS gene spans about 40 kb of DNA and is encoded by 17 exons. The nucleotide sequence of the exons is identical to that ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(05)80363-5

    authors: Plougastel B,Zucman J,Peter M,Thomas G,Delattre O

    更新日期:1993-12-01 00:00:00

  • The proximity of DNA sequences in interphase cell nuclei is correlated to genomic distance and permits ordering of cosmids spanning 250 kilobase pairs.

    abstract::The physical distance between DNA sequences in interphase nuclei was determined using eight cosmids containing fragments of the Chinese hamster genome that span 273 kb surrounding the dihydrofolate reductase (DHFR) gene. The distance between these sequences at the molecular level has been determined previously by rest...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90112-2

    authors: Trask B,Pinkel D,van den Engh G

    更新日期:1989-11-01 00:00:00

  • A mutation in apolipoprotein A-I in the Iowa type of familial amyloidotic polyneuropathy.

    abstract::Immunoblotting of isoelectric focusing gels of plasma and direct genomic DNA sequencing have been used to characterize a mutation in apolipoprotein A-I associated with the familial amyloidotic polyneuropathy originally described by Van Allen in an Iowa kindred. An arginine for glycine substitution in apolipoprotein A-...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90288-6

    authors: Nichols WC,Gregg RE,Brewer HB Jr,Benson MD

    更新日期:1990-10-01 00:00:00

  • Genome wide microarray based expression profiles associated with BmNPV resistance and susceptibility in Indian silkworm races of Bombyx mori.

    abstract::The molecular mechanism involved in BmNPV resistance was investigated using a genome wide microarray in midgut tissue of Indian silkworm Bombyx mori. In resistant race (Sarupat), 735 genes up-regulated and 589 genes down-regulated at 12 h post BmNPV infection. Similarly, in case of susceptible race (CSR-2), 2183 genes...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2015.09.002

    authors: Lekha G,Gupta T,Awasthi AK,Murthy GN,Trivedy K,Ponnuvel KM

    更新日期:2015-12-01 00:00:00

  • Chromosomal assignment of retinoic acid receptor (RAR) genes in the human, mouse, and rat genomes.

    abstract::The human genes encoding the alpha and beta forms of the retinoic acid receptor are known to be located on chromosomes 17 (band q21.1:RARA) and 3 (band p24:RARB). By in situ hybridization, we have now localized the gene for retinoic acid receptor gamma, RARG, on chromosome 12, band q13. We also mapped the three retino...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90199-o

    authors: Mattei MG,Rivière M,Krust A,Ingvarsson S,Vennström B,Islam MQ,Levan G,Kautner P,Zelent A,Chambon P

    更新日期:1991-08-01 00:00:00

  • Striking bimodal methylation of the repeat unit of the tandem array encoding human U2 snRNA (the RNU2 locus).

    abstract::The genes encoding human U2 small nuclear RNA are arrayed in tandem (the RNU2 locus) and have undergone concerted evolution for >35 Myr. Tandem organization of repetitive sequences may facilitate recombination that underlies concerted evolution, but could risk instability. Since DNA methylation plays a crucial role in...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.6052

    authors: Jiang C,Liao D

    更新日期:1999-12-15 00:00:00

  • Structure of the gene for the testis-specific proprotein convertase 4 and of its alternate messenger RNA isoforms.

    abstract::Proprotein convertase 4 (PC4) is a mammalian secretory serine endoproteinase similar to the yeast KEX2 gene product and specifically expressed in testicular germs cells. PC4 mRNA isoforms that vary in size and 3' coding sequence have been reported (N. G. Seitah, R. Day, J. Hamelin, A. Gaspar, M. W. Collard, and M. Chr...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1158

    authors: Mbikay M,Raffin-Sanson ML,Tadros H,Sirois F,Seidah NG,Chretien M

    更新日期:1994-03-15 00:00:00

  • Genomic organization, alternative splicing, and expression patterns of the DSCR1 (Down syndrome candidate region 1) gene.

    abstract::Down syndrome is a major cause of mental retardation and congenital heart defects and is due to the presence of three copies of human chromosome 21 in the affected individual. We have identified a gene, DSCR1 (HGMW-approved symbol), from the region 21q22.1-q22.2, which is highly expressed in human fetal brain and adul...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4866

    authors: Fuentes JJ,Pritchard MA,Estivill X

    更新日期:1997-09-15 00:00:00

  • DLG3, the gene encoding human neuroendocrine Dlg (NE-Dlg), is located within the 1.8-Mb dystonia-parkinsonism region at Xq13.1.

    abstract::Neuroendocrine-Dlg (NE-Dlg) is a member of the discs-large-related (DLG) subfamily of the membrane-associated guanylate kinase-related protein family. Based on evidence from model systems, this protein appears to be critical for synaptogenesis, acting as a site-specific organizational center for integral membrane prot...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5243

    authors: Stathakis DG,Lee D,Bryant PJ

    更新日期:1998-04-15 00:00:00

  • Localization of a new type of X-linked liver glycogenosis to the chromosomal region Xp22 containing the liver alpha-subunit of phosphorylase kinase (PHKA2).

    abstract::We describe here a new type of X-linked liver glycogen storage disease. The main symptoms include liver enlargement and growth retardation. The clinical and biochemical abnormalities of this glycogenosis are similar to those of classical X-linked liver glycogenosis due to phosphorylase kinase deficiency (XLG). However...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1322

    authors: Hendrickx J,Coucke P,Hors-Cayla MC,Smit GP,Shin YS,Deutsch J,Smeitink J,Berger R,Lee P,Fernandes J

    更新日期:1994-06-01 00:00:00

  • Insertional mutation of the motor endplate disease (med) locus on mouse chromosome 15.

    abstract::Homozygous transgenic mice from line A4 have an early-onset progressive neuromuscular disorder characterized by paralysis of the rear limbs, muscle atrophy, and lethality by 4 weeks of age. The transgene insertion site was mapped to distal chromosome 15 close to the locus motor endplate disease (med). The sequence of ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80198-u

    authors: Kohrman DC,Plummer NW,Schuster T,Jones JM,Jang W,Burgess DL,Galt J,Spear BT,Meisler MH

    更新日期:1995-03-20 00:00:00

  • Sole head transcriptomics reveals a coordinated developmental program during metamorphosis.

    abstract::Most teleosts undergo a thyroid hormone (TH) regulated larval to juvenile transition known as metamorphosis. In Pleuronectiformes (flatfish), metamorphosis is most dramatic, and one eye of the symmetric pelagic larvae migrates to the opposite side of the head, giving rise to an asymmetric benthic juvenile with both ey...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.04.011

    authors: Louro B,Marques JP,Manchado M,Power DM,Campinho MA

    更新日期:2020-01-01 00:00:00

  • Invertebrate tissue inhibitor of metalloproteinase: structure and nested gene organization within the synapsin locus is conserved from Drosophila to human.

    abstract::Vertebrate tissue inhibitors of metalloproteinases (TIMPs) regulate extracellular matrix metalloproteinases and are thus involved in a wide variety of developmental and physiological processes. By identifying cDNAs of a transcript detected within an intron of the Drosophila synapsin gene we have cloned the Drosophila ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5776

    authors: Pohar N,Godenschwege TA,Buchner E

    更新日期:1999-04-15 00:00:00

  • The generation of a library of PCR-analyzed microsatellite variants for genetic mapping of the mouse genome.

    abstract::Forty-three sequences containing simple sequence repeats or microsatellites were generated from an M13 library of total genomic mouse DNA. These sequences were analyzed for size variation using the polymerase chain reaction and gel electrophoresis without the need for radiolabeling. Seventy-two percent of the sequence...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90175-e

    authors: Cornall RJ,Aitman TJ,Hearne CM,Todd JA

    更新日期:1991-08-01 00:00:00

  • Construction of 110 cosmid markers and a 4.5-Mb YAC contig on human chromosome 8p12-q11.

    abstract::Microcell hybrids containing various regions of human chromosome 8 were formed by microcell-mediated transfer of neo-tagged chromosome 8 into the cells derived from severe combined immunodeficiency (SCID) mouse. Thus, 110 cosmid markers were isolated from SV40-transformed SCID fibroblast cell line (SCVA) containing a ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1125

    authors: Kurimasa A,Suzuki N,Kumano S,Li H,Wells D,Wagner MJ,Chen F,Chen DJ,Oshimura M

    更新日期:1995-07-20 00:00:00

  • Identification and characterization of a cDNA and the structural gene encoding the mouse epithelial membrane protein-1.

    abstract::The PMP22/EMP/MP20 gene family includes four closely related proteins, peripheral myelin protein-22 (PMP22), epithelial membrane protein-1 (EMP-1), epithelial membrane protein-2 (EMP-2), and epithelial membrane protein-3 (EMP-3), which share amino acid identities ranging from 33 to 43%. In addition, the lens-specific ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0482

    authors: Lobsiger CS,Magyar JP,Taylor V,Wulf P,Welcher AA,Program AE,Suter U

    更新日期:1996-09-15 00:00:00

  • Cloning and characterization of RNF6, a novel RING finger gene mapping to 13q12.

    abstract::Myeloproliferative disorders frequently show deletions or rearrangements of the long arm of chromosome 13. We report here the cloning of RNF6, a new gene that maps close to the chromosome 13 breakpoint in a case of myelofibrosis with a t(4;13)(q26;q12). RNF6 is predicted to encode a 685-amino-acid protein with a coile...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5802

    authors: Macdonald DH,Lahiri D,Sampath A,Chase A,Sohal J,Cross NC

    更新日期:1999-05-15 00:00:00

  • Comparative sequence analysis of the Gdf6 locus reveals a duplicon-mediated chromosomal rearrangement in rodents and rapidly diverging coding and regulatory sequences.

    abstract::Duplicated segments of genomic DNA can catalyze both gene evolution and chromosome evolution. Here we describe a rodent-specific duplication involving the Uqcrb gene, a cis-regulatory element for the Gdf6 gene, and a chromosomal rearrangement. Comparisons of Gdf6 sequences from several placental mammals and platypus r...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.07.009

    authors: Mortlock DP,Portnoy ME,Chandler RL,NISC Comparative Sequencing Program.,Green ED

    更新日期:2004-11-01 00:00:00

  • A risk signature of three autophagy-related genes for predicting lower grade glioma survival is associated with tumor immune microenvironment.

    abstract::Treatment for lower-grade gliomas (LGG) has been challenging. Though emerging approaches such as immunotherapy is promising, it is still faced with immune tolerance, an obstacle that may be overcome by targeting autophagy-related (ATG) genes. After identifying three differentially expressed ATG genes (RIPK2, MUL1 and ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.10.008

    authors: Lin JZ,Lin N

    更新日期:2020-10-15 00:00:00

  • DNA-methylation dependent regulation of embryo-specific 5S ribosomal DNA cluster transcription in adult tissues of sea urchin Paracentrotus lividus.

    abstract::We have previously reported a molecular and cytogenetic characterization of three different 5S rDNA clusters in the sea urchin Paracentrotus lividus and recently, demonstrated the presence of high heterogeneity in functional 5S rRNA. In this paper, we show some important distinctive data on 5S rRNA transcription for t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2013.08.001

    authors: Bellavia D,Dimarco E,Naselli F,Caradonna F

    更新日期:2013-10-01 00:00:00

  • Deletion mapping of the medulloblastoma locus on chromosome 17p.

    abstract::Isochromosome 17q has previously been observed consistently in cytogenetic studies of medulloblastoma, the most common posterior fossa neoplasm in children. We performed a restriction fragment length polymorphism (RFLP) investigation of medulloblastoma which showed a loss of chromosome 17p sequences in 45% of these tu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90283-z

    authors: Cogen PH,Daneshvar L,Metzger AK,Edwards MS

    更新日期:1990-10-01 00:00:00

  • Genomic mismatch scanning identifies human genomic DNA shared identical by descent.

    abstract::Genomic mismatch scanning (GMS) is a high-throughput, high-resolution identity by descent mapping technique that enriches for genomic DNA fragments that are shared between related individuals. In GMS, DNA heteroduplexes are formed from restriction-digested genomic DNA fragments from two relatives. Mismatch-free DNA he...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.5082

    authors: Cheung VG,Nelson SF

    更新日期:1998-01-01 00:00:00

  • Acquisition of social behavior in mammalian lineages is related with duplication events of FPR genes.

    abstract::Formyl peptide receptors (FPRs) were firstly detected in immune cells where they act as key mediators of leukocyte chemotaxis, promoting the host defense against pathogens. Recently, three paralogs were reported in Homo sapiens (FPR1-3) and seven paralogs in Mus musculus (FPR1, FPRrs1-4, FPRrs6 and FPRrs7), but inform...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.03.015

    authors: Silva L,Mendes T,Antunes A

    更新日期:2020-07-01 00:00:00

  • The gene for human U2 snRNP auxiliary factor small 35-kDa subunit (U2AF1) maps to the progressive myoclonus epilepsy (EPM1) critical region on chromosome 21q22.3.

    abstract::We used targeted exon trapping to clone portions of genes from human chromosome 21q22.3. One trapped sequence showed complete homology with the cDNA of human U2AF35 (M96982; HGM-approved nomenclature U2AF1), which encodes for the small 35-kDa subunit of the U2 snRNP auxiliary factor. Using the U2AF1 cDNA as a probe, w...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0196

    authors: Lalioti MD,Gos A,Green MR,Rossier C,Morris MA,Antonarakis SE

    更新日期:1996-04-15 00:00:00

  • Human uroporphyrinogen-III synthase: genomic organization, alternative promoters, and erythroid-specific expression.

    abstract::Uroporphyrinogen-III (URO) synthase is the heme biosynthetic enzyme defective in congenital erythropoietic porphyria. The approximately 34-kb human URO-synthase gene (UROS) was isolated, and its organization and tissue-specific expression were determined. The gene had two promoters that generated housekeeping and eryt...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6373

    authors: Aizencang G,Solis C,Bishop DF,Warner C,Desnick RJ

    更新日期:2000-12-01 00:00:00

  • CLONEPLACER: a software tool for simulating contig formation for ordered shotgun sequencing.

    abstract::This communication describes a software tool that enables one to simulate large-scale regional mapping using an ordered shotgun sequencing approach. The analysis routines that are provided yield an estimate of the depth of coverage of the physical map, the largest contig formed, and the number of gaps remaining at any...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80057-s

    authors: Singh GB,Krawetz SA

    更新日期:1995-01-20 00:00:00

  • Assignment of a novel protein tyrosine phosphatase gene (Hcph) to mouse chromosome 6.

    abstract::Hematopoietic cell phosphatase (Hcph) was identified by amplification of conserved protein tyrosine phosphatase sequences from a myeloid cell line and is predominantly expressed in hematopoietic cells. Hcph is unique in containing two, tandemly repeated, src-homology 2 domains in the amino terminal region of the phosp...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(05)80189-2

    authors: Yi T,Gilbert DJ,Jenkins NA,Copeland NG,Ihle JN

    更新日期:1992-11-01 00:00:00