Neutralizing activity of antibodies to the V3 loop region of HIV-1 gp120 relative to their epitope fine specificity.

Abstract:

:The V3 loop of HIV-1 gp120 is considered occluded on many primary viruses. However, virus sensitivity to neutralization by different V3 mAbs often varies, indicating that access to V3 is not restricted equally for all antibodies. Here, we have sought to gain a better understanding of these restrictions by determining the neutralizing activities of 7 V3 mAbs (19b, 39F, CO11, F2A3, F530, LA21, and LE311) against 15 subtype B primary isolates and relating these activities to the fine specificity of the mAbs. Not surprisingly, we found that most mAbs neutralized the same 2-3 viruses, with only mAb F530 able to neutralize 2 additional viruses not neutralized by the other mAbs. Epitope mapping revealed that positively-charged residues in or near the V3 stem are important for the binding of all the mAbs and that most mAbs seem to require the Pro residue that forms the GPGR beta hairpin turn in the V3 tip for binding. Based on the mapping, we determined that V3 sequence variation accounted for neutralization resistance of approximately half the viruses tested. Comparison of these results to those of select V3 mAbs with overall better neutralizing activities in the light of structural information illustrates how an antibody's mode of interaction with V3, driven by contact residue requirements, may restrict the antibody from accessing its epitope on different viruses. Based on the data we propose an angle of interaction with V3 that is less stringent on access for antibodies with cross-neutralizing activity compared to antibodies that neutralize relatively fewer viruses.

journal_name

Virology

journal_title

Virology

authors

Pantophlet R,Wrin T,Cavacini LA,Robinson JE,Burton DR

doi

10.1016/j.virol.2008.08.032

subject

Has Abstract

pub_date

2008-11-25 00:00:00

pages

251-60

issue

2

eissn

0042-6822

issn

1096-0341

pii

S0042-6822(08)00552-7

journal_volume

381

pub_type

杂志文章

相关文献

VIROLOGY文献大全
  • Isolation of a novel subgroup B feline leukemia virus from a cat infected with FeLV-A.

    abstract::Proviruses were cloned directly from a cat that developed neurological disorders approximately 28 months after inoculation with a molecularly cloned, minimally pathogenic subgroup A feline leukemia virus (FeLV-A). In addition to FeLV-A proviruses that were nearly identical to the inoculated virus, we detected a subgro...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1994.1597

    authors: Boomer S,Gasper P,Whalen LR,Overbaugh J

    更新日期:1994-11-01 00:00:00

  • Mapping regions of Epstein-Barr virus (EBV) glycoprotein B (gB) important for fusion function with gH/gL.

    abstract::Glycoproteins gB and gH/gL are required for entry of Epstein-Barr virus (EBV) into cells, but the role of each glycoprotein and how they function together to mediate fusion is unclear. Analysis of the functional homology of gB from the closely related primate gammaherpesvirus, rhesus lymphocryptovirus (Rh-LCV), showed...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2010.12.006

    authors: Plate AE,Reimer JJ,Jardetzky TS,Longnecker R

    更新日期:2011-04-25 00:00:00

  • Immunization with dissociated neuraminidase, matrix, and nucleoproteins from influenza A virus eliminates cognate help and antigenic competition.

    abstract::When hemagglutinin (HA) and neuraminidase (NA) are presented together on an intact influenza virus particle, the antigens are competitive, with HA dominant over NA in T- and B-cell priming. Immunization with mixtures of purified HA and NA eliminates antigenic competition between HA and NA, as well as between N1-N2 NA ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0581

    authors: Johansson BE,Kilbourne ED

    更新日期:1996-11-01 00:00:00

  • La Crosse bunyavirus can mediate pH-dependent fusion from without.

    abstract::Lipid binding properties which are dependent on exposure to acid pH are an important mechanism for the cellular entry pathway for some enveloped viruses and for other macromolecules. Cell-to-cell fusion can be used to demonstrate this function. La Crosse virus, a member of the family Bunyaviridae, fused BHK-21 cells f...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(84)90107-7

    authors: Gonzalez-Scarano F,Pobjecky N,Nathanson N

    更新日期:1984-01-15 00:00:00

  • Negative regulation of a heterologous promoter by human cytomegalovirus immediate-early protein IE2.

    abstract::The HCMV IE2 protein promiscuously activates transcription of many viral and cellular genes. IE2 also negatively autoregulates its own expression by binding to a strategically positioned IE2 binding site, called CRS, located immediately downstream of the TATA box of the HCMV major IE promoter. Here we show that IE2 is...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1997.8855

    authors: Tsai HL,Kou GH,Tang FM,Wu CW,Lin YS

    更新日期:1997-11-24 00:00:00

  • ZikaBase: An integrated ZIKV- Human Interactome Map database.

    abstract::Re-emergence of ZIKV has caused infections in more than 1.5 million people. The molecular mechanism and pathogenesis of ZIKV is not well explored due to unavailability of adequate model and lack of publically accessible resources to provide information of ZIKV-Human protein interactome map till today. This study made ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2017.11.007

    authors: Gurumayum S,Brahma R,Naorem LD,Muthaiyan M,Gopal J,Venkatesan A

    更新日期:2018-01-15 00:00:00

  • Low levels of herpes simplex virus thymidine- thymidylate kinase are not limiting for sensitivity to certain antiviral drugs or for latency in a mouse model.

    abstract::Herpes simplex virus mutant KG111 contains a nonsense mutation at codon 44 of the viral thymidine kinase (tk) gene and produces low amounts of a truncated tk polypeptide. We tested mutant KG111 and related viruses that specify varying amounts of similar truncated tk polypeptides for their sensitivities to antiviral nu...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90261-4

    authors: Coen DM,Irmiere AF,Jacobson JG,Kerns KM

    更新日期:1989-02-01 00:00:00

  • The genome sequence of the multinucleocapsid nucleopolyhedrovirus of the Chinese oak silkworm Antheraea pernyi.

    abstract::The complete genome sequence of the Liaoning isolate of the Antheraea pernyi multinucleocapsid nucleopolyhedrovirus (AnpeMNPV) was determined. The viral genome size is 126,246 bp, relatively GC-rich (53.5% G+C), with 145 predicted open reading frames (ORFs) of more than 50 amino acids, accounting for more than 97% of ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.04.027

    authors: Fan Q,Li S,Wang L,Zhang B,Ye B,Zhao Z,Cui L

    更新日期:2007-09-30 00:00:00

  • Vaccination with herpes simplex virus type 1 glycoprotein K impairs clearance of virus from the trigeminal ganglia resulting in chronic infection.

    abstract::Following primary ocular infection, HSV-1 establishes a latent infection in the trigeminal ganglia with the complete absence of detectable infectious virus. Recently, we showed that vaccination of BALB/cJ with HSV-1 glycoprotein K (gK), but not other HSV-1 glycoproteins, significantly exacerbated the severity of HSV-1...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0537

    authors: Ghiasi H,Cai S,Nesburn AB,Wechsler SL

    更新日期:1996-10-01 00:00:00

  • Identification and characterization of the repetitive DNA element in the genome of insect iridescent virus type 6.

    abstract::The genome of the Chilo iridescent virus (CIV) was analyzed for existence of repetitive DNA sequences by DNA-DNA hybridization using a defined and complete gene library of the viral genome (209 kbp) and by heteroduplex mapping. These experiments revealed the presence of repetitive DNA elements in the CIV genome, which...

    journal_title:Virology

    pub_type: 杂志文章

    doi:

    authors: Fischer M,Schnitzler P,Delius H,Darai G

    更新日期:1988-12-01 00:00:00

  • Varicella-zoster virus infection of human sensory neurons.

    abstract::Primary varicella-zoster virus (VZV) infection of humans may result in latent infection of sensory neurons in the peripheral nervous system. To examine the interaction of VZV with the sensory neuron we infected immunochemically defined human neurons with cell-associated VZV. Utilizing double-label immunofluorescence t...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(86)90141-8

    authors: Wigdahl B,Rong BL,Kinney-Thomas E

    更新日期:1986-07-30 00:00:00

  • Shared ancestry of herpes simplex virus 1 strain Patton with recent clinical isolates from Asia and with strain KOS63.

    abstract::Herpes simplex virus 1 (HSV-1) is a widespread pathogen that persists for life, replicating in surface tissues and establishing latency in peripheral ganglia. Increasingly, molecular studies of latency use cultured neuron models developed using recombinant viruses such as HSV-1 GFP-US11, a derivative of strain Patton ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2017.09.016

    authors: Pourchet A,Copin R,Mulvey MC,Shopsin B,Mohr I,Wilson AC

    更新日期:2017-12-01 00:00:00

  • Expression and glycosylation of the respiratory syncytial virus G protein in Saccharomyces cerevisiae.

    abstract::A cDNA encoding the entire amino acid sequence of the G glycoprotein of respiratory syncytial virus (RSV) was inserted into a yeast-Escherichia coli shuttle vector such that expression of the virus gene was regulated by the yeast GAL1 promoter. Transformation of Saccharomyces cerevisiae with the vector led to the form...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(87)90485-5

    authors: Ding MX,Wen DZ,Schlesinger MJ,Wertz GW,Ball LA

    更新日期:1987-08-01 00:00:00

  • The P genes of human parainfluenza virus type 1 clinical isolates are polycistronic and microheterogeneous.

    abstract::The nucleotide sequence of the P gene of human parainfluenza virus type 1 (hPIV1) strain C35 was determined directly from genomic viral RNA and by molecular cloning. The gene contained 1893 nucleotides. Four open reading frames (ORF) capable of encoding a P protein (568 amino acids; M(r) = 64,784), a C' protein (219 a...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90712-x

    authors: Power UF,Ryan KW,Portner A

    更新日期:1992-07-01 00:00:00

  • Identification of an octanucleotide motif sequence essential for viral protein, DNA, and progeny virus biosynthesis at the origin of DNA replication of porcine circovirus type 2.

    abstract::A plasmid-based transfection system capable of generating infectious porcine circovirus type 2 (PCV2) was established. This system was then used in mutagenesis studies to investigate the involvement of a "conserved" nonanucleotide (which constitutes a portion of the loop sequence) located at the origin of DNA replicat...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2004.03.037

    authors: Cheung AK

    更新日期:2004-06-20 00:00:00

  • Strains and mutants of tobacco mosaic virus are both found in virus derived from single-lesion-passaged inoculum.

    abstract::An analysis has been made of variants found in preparations of the common (U1) strain of tobacco mosaic virus (TMV) which had been obtained after the inoculum had been passaged through a necrotic local lesion. These lesions were induced with a minimal number of virions (3000 or 30,000) per inoculation point. The relat...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(84)90097-7

    authors: García-Arenal F,Palukaitis P,Zaitlin M

    更新日期:1984-01-15 00:00:00

  • Characterization of the capsid associating activity of bacteriophage P4's Psu protein.

    abstract::The Psu (Polarity suppression) protein of satellite bacteriophage P4 was first characterized as an anti-terminator of transcription termination in Escherichia coli. Psu is also a structural component of mature P4 capsids, where it is present as a decoration protein. Psu is located externally on the capsid surface, and...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1993.1307

    authors: Isaksen ML,Dokland T,Lindqvist BH

    更新日期:1993-06-01 00:00:00

  • Temperature and density dependent induction of a cytopathic effect following infection with non-cytopathic HAV strains.

    abstract::Hepatitis A virus infection and growth in cultured cells is protracted, cell-type restricted, and generally not accompanied by the appearance of a cytopathic effect, with the exception of some culture-adapted strains. We demonstrate that the non-cytopathic HAV strain HM175/clone 1 can be induced to exhibit a cytopathi...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2012.04.010

    authors: Wales SQ,Ngo D,Hida K,Kulka M

    更新日期:2012-08-15 00:00:00

  • Differences in transformation activity between HPV-18 and HPV-16 map to the viral LCR-E6-E7 region.

    abstract::Homologous, subgenomic fragments of the viral LCR and E6/E7 transforming genes of HPV-18 and HPV-16 were amplified from several primary cervical, penile, and vulvar tumors and cloned into a pUC-18-derived vector. When assayed by a quantitative transformation assay using primary human keratinocytes, the subgenomic regi...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(91)90507-8

    authors: Villa LL,Schlegel R

    更新日期:1991-03-01 00:00:00

  • Gene flow and competitive exclusion of avian influenza A virus in natural reservoir hosts.

    abstract::Geographical separation of host species has shaped the avian influenza A virus gene pool into independently evolving Eurasian and American lineages, although phylogenetic evidence for gene flow and reassortment indicates that these lineages also mix on occasion. While the evolutionary dynamics of the avian influenza g...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.05.002

    authors: Bahl J,Vijaykrishna D,Holmes EC,Smith GJ,Guan Y

    更新日期:2009-08-01 00:00:00

  • Effect of C-terminal mutations of alfalfa mosaic virus coat protein on dimer formation and assembly in vitro.

    abstract::The coat protein (CP) of alfalfa mosaic virus (AMV) strain 425 assembles to bacilliform or rod-shaped particles in the presence of nucleic acids or to T = 1 empty icosahedral particles in the absence of nucleic acids. To study the determinants of CP assembly, recombinant CPs (rCPs) that contained a (His)(6) region wer...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.9805

    authors: Choi J,Loesch-Fries LS

    更新日期:1999-07-20 00:00:00

  • Intracellular factors, but not virus receptor levels, influence the age-related outcome of DHBV infection of ducks.

    abstract::Previous serological studies of experimental infection with duck hepatitis B virus (DHBV) have shown that the outcome of infection depends largely on the age of the duck at the time of inoculation. To examine the hypothesis that decreased susceptibility with increased age might be due to the loss of the virus receptor...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90017-j

    authors: Qiao M,Gowans EJ,Burrell CJ

    更新日期:1992-02-01 00:00:00

  • Transforming activity of the E6 gene of HPV-11gt in NIH 3T3 and REF 52 cells: correlation with the level of E6 transcription.

    abstract::Among human papillomavirus (HPV) types, clinical association with benign vs malignant lesions correlates with the ability of the corresponding oncogenes to transform cells in vitro. However, even though HPV-11 is considered a low-risk type, we have reported previously that the E5a oncogene of HPV-11gt is capable of tr...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0279

    authors: Trujillo JM,Mounts P

    更新日期:1996-06-01 00:00:00

  • Identification of human and mouse homologs of the MC51L-53L-54L family of secreted glycoproteins encoded by the Molluscum contagiosum poxvirus.

    abstract::Molluscum contagiosum virus (MCV) is a human poxvirus that produces small, benign skin tumors primarily in young children and encodes proteins that modulate the host immune response. The MC51L, MC53L, and MC54L open reading frames of MCV have significant amino acid sequence similarities and related proteins are encode...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.9676

    authors: Xiang Y,Moss B

    更新日期:1999-05-10 00:00:00

  • The effect of elevated levels of herpes simplex virus alpha-gene products on the expression of model early and late genes in vivo.

    abstract::The rate of synthesis in vivo and the steady-state level of mRNA of four "model" herpes simplex virus type 1 (HSV-1) genes were measured as a function of high levels of alpha-gene products. The genes studied were ICP4 (alpha), deoxy-UTPase (beta), VP5 (beta gamma), and glycoprotein C (gC, gamma). Accumulation of high ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(87)90318-7

    authors: Zhang YF,Devi-Rao GB,Rice M,Sandri-Goldin RM,Wagner EK

    更新日期:1987-03-01 00:00:00

  • Prediction of functional class of novel viral proteins by a statistical learning method irrespective of sequence similarity.

    abstract::The function of a substantial percentage of the putative protein-coding open reading frames (ORFs) in viral genomes is unknown. As their sequence is not similar to that of proteins of known function, the function of these ORFs cannot be assigned on the basis of sequence similarity. Methods complement or in combination...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2004.10.020

    authors: Han LY,Cai CZ,Ji ZL,Chen YZ

    更新日期:2005-01-05 00:00:00

  • Deletion of 55 open reading frames from the termini of vaccinia virus.

    abstract::Each copy of the inverted terminal repeat of vaccinia virus consists of 8 kb of DNA containing 9 ORFS flanked near the terminus of the genome by 4 kb of repetitive DNA which in turn contains blocks of tandem repeats. Using plasmids containing repetitive DNA as the external arm, we have generated deletions at both the ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(91)90047-f

    authors: Perkus ME,Goebel SJ,Davis SW,Johnson GP,Norton EK,Paoletti E

    更新日期:1991-01-01 00:00:00

  • Characterization of tail sheath protein of giant bacteriophage phiKZ Pseudomonas aeruginosa.

    abstract::The tail sheath protein of giant bacteriophage phiKZ Pseudomonas aeruginosa encoded by gene 29 was identified and its expression system was developed. Localization of the protein on the virion was confirmed by immunoelectron microscopy. Properties of gene product (gp) 29 were studied by electron microscopy, immunoblot...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.09.015

    authors: Kurochkina LP,Aksyuk AA,Sachkova MY,Sykilinda NN,Mesyanzhinov VV

    更新日期:2009-12-20 00:00:00

  • Impact of viral accessory proteins of SIVsmmPBj on early steps of infection of quiescent cells.

    abstract::Although lentiviruses like HIV-1 are able to infect non-dividing cells, particular resting cells such as non-stimulated primary peripheral blood mononuclear cells (PBMC) are resistant to infection. In contrast to other lentiviruses, SIVsmmPBj can replicate in non-stimulated PBMC. Moreover, SIVsmmPBj-derived, but not H...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.03.008

    authors: Wolfrum N,Mühlebach MD,Schüle S,Kaiser JK,Kloke BP,Cichutek K,Schweizer M

    更新日期:2007-08-01 00:00:00

  • Virulence and pathogenesis of the MSW and MSD strains of Californian myxoma virus in European rabbits with genetic resistance to myxomatosis compared to rabbits with no genetic resistance.

    abstract::The pathogenesis of two Californian strains of myxoma virus (MSW and MSD) was examined in European rabbits (Oryctolagus cuniculus) that were either susceptible to myxomatosis (laboratory rabbits) or had undergone natural selection for genetic resistance to myxomatosis (Australian wild rabbits). MSW was highly lethal f...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2005.12.007

    authors: Silvers L,Inglis B,Labudovic A,Janssens PA,van Leeuwen BH,Kerr PJ

    更新日期:2006-04-25 00:00:00