Transcript profiling of expressed sequence tags from intramuscular fat, longissimus dorsi muscle and liver in Korean cattle (Hanwoo).

Abstract:

:A large data set of Hanwoo (Korean cattle) ESTs was analyzed to obtain differential gene expression results for the following three libraries: intramuscular fat, longissimus dorsi muscle and liver. To better understand the gene expression profiles, we identified differentially expressed genes (DEGs) via digital gene expression analysis. Hierarchical clustering of genes was performed according to their relative abundance within the six separate groups (Hanwoo fat versus non-Hanwoo fat, Hanwoo muscle versus non-Hanwoo muscle and Hanwoo liver versus non-Hanwoo liver), producing detailed patterns of gene expression. We determined the quantitative traits associated with the highly expressed genes. We also provide the first list of putative regulatory elements associated with differential tissue expression in Hanwoo cattle. In addition, we conducted evolutionary analysis that suggests a subset of genes accelerated in the bovine lineage are strongly correlated with their expression in Hanwoo muscle.

journal_name

BMB Rep

journal_title

BMB reports

authors

Lim D,Lee SH,Cho YM,Yoon D,Shin Y,Kim KW,Park HS,Kim H

doi

10.5483/bmbrep.2010.43.2.115

subject

Has Abstract

pub_date

2010-02-01 00:00:00

pages

115-21

issue

2

eissn

1976-6696

issn

1976-670X

journal_volume

43

pub_type

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