Subcellular Chemical Imaging: New Avenues in Cell Biology.

Abstract:

:To better understand the physiology and acclimation capability of the cell, one of the great challenges of the future is to access the interior of a cell and unveil its chemical landscape (composition and distribution of elements and molecules). Chemical imaging has greatly improved in sensitivity and spatial resolution to visualize and quantify nutrients, metabolites, toxic elements, and drugs in single cells at the subcellular level. This review aims to present the current potential of these emerging imaging technologies and to guide biologists towards a strategy for interrogating biological processes at the nanoscale. We also describe various solutions to combine multiple imaging techniques in a correlative way and provide perspectives and future directions for integrative subcellular imaging across different disciplines.

journal_name

Trends Cell Biol

journal_title

Trends in cell biology

authors

Decelle J,Veronesi G,Gallet B,Stryhanyuk H,Benettoni P,Schmidt M,Tucoulou R,Passarelli M,Bohic S,Clode P,Musat N

doi

10.1016/j.tcb.2019.12.007

subject

Has Abstract

pub_date

2020-03-01 00:00:00

pages

173-188

issue

3

eissn

0962-8924

issn

1879-3088

pii

S0962-8924(19)30221-1

journal_volume

30

pub_type

杂志文章,评审
  • PDZ domains in synapse assembly and signalling.

    abstract::Synaptic junctions are highly specialized structures designed to promote the rapid and efficient transmission of signals from the presynaptic terminal to the postsynaptic membrane within the central nervous system. Proteins containing PDZ domains play a fundamental organizational role at both the pre- and postsynaptic...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0962-8924(00)01783-9

    authors: Garner CC,Nash J,Huganir RL

    更新日期:2000-07-01 00:00:00

  • Understanding Ubiquinone.

    abstract::Ubiquinone (UQ; also known as coenzyme Q; CoQ) is a mobile component of the mitochondrial electron transport chain, where it acts as a pro-oxidant in its ubisemiquinone state. Despite this, UQ is also believed to be a membrane antioxidant. These properties place UQ at the center of hotly debated questions about how mi...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2015.12.007

    authors: Wang Y,Hekimi S

    更新日期:2016-05-01 00:00:00

  • CGH-1 and the control of maternal mRNAs.

    abstract::Development requires the translation of stored maternal messenger RNAs (mRNAs) in a spatial and temporally specified manner. Maternal mRNAs are often in large RNA-protein (RNP) granules. Recent papers reveal that maternal mRNA granules in Caenorhabditis elegans oocytes and early development are dynamic and related to ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2008.11.001

    authors: Rajyaguru P,Parker R

    更新日期:2009-01-01 00:00:00

  • Intracellular organelle transport: few motors, many signals.

    abstract::Bidirectional microtubule-dependent organelle transport in melanophores is regulated by cAMP through organelle-bound protein kinase A (PKA); however, the mechanisms responsible for this regulation are unknown. A recent study by Gelfand and colleagues demonstrates that, in addition to PKA, transport is regulated by the...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/j.tcb.2005.06.002

    authors: Kashina A,Rodionov V

    更新日期:2005-08-01 00:00:00

  • Lymphocyte recirculation and homing: roles of adhesion molecules and chemoattractants.

    abstract::Lymphocyte migration from high endothelial venules into lymphoid organs is mediated by a sequence of interactions between cell adhesion molecules on lymphocytes and those on the vascular endothelial cells that line the vessels. recent studies suggest that the so-called lymphocyte homing receptors and vascular addressi...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/0962-8924(94)90234-8

    authors: Ager A

    更新日期:1994-09-01 00:00:00

  • CDK1, the Other 'Master Regulator' of Autophagy.

    abstract::Autophagy and cap-dependent mRNA translation are tightly regulated by the mechanistic target of rapamycin complex 1 (mTORC1) signalling complex in response to nutrient availability. However, the regulation of these processes, and mTORC1 itself, is different during mitosis, and this has remained an area of significant ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2020.11.001

    authors: Odle RI,Florey O,Ktistakis NT,Cook SJ

    更新日期:2021-02-01 00:00:00

  • Fibroblast biology in three-dimensional collagen matrices.

    abstract::Research on fibroblast biology in three-dimensional collagen matrices offers new opportunities to understand the reciprocal and adaptive interactions that occur between cells and surrounding matrix in a tissue-like environment. Such interactions are integral to the regulation of connective tissue morphogenesis and dyn...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0962-8924(03)00057-6

    authors: Grinnell F

    更新日期:2003-05-01 00:00:00

  • Intracellular proteolysis.

    abstract::Our present understanding of intracellular protein degradation developed from an attempt to understand the metabolic stability of proteins in cells. With the unravelling of its complex biochemical machinery has come a realization that protein degradation plays an important role in the most crucial events in the cell c...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:

    authors: Kirschner M

    更新日期:1999-12-01 00:00:00

  • Sorting nuclear membrane proteins at mitosis.

    abstract::The nuclear envelope (NE) breaks down reversibly and reassembles at mitosis. Two models of mitotic nuclear membrane disassembly and reformation have emerged from studies of NE dynamics in somatic cells and egg extracts. One model suggests that nuclear membranes fragment reversibly by vesiculation, producing NE-derived...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/s0962-8924(99)01697-9

    authors: Collas P,Courvalin JC

    更新日期:2000-01-01 00:00:00

  • Endoreplication: The Good, the Bad, and the Ugly.

    abstract::To battle adverse internal and external conditions and maintain homeostasis, diploid organisms employ various cellular processes, such as proliferation and apoptosis. In some tissues, an alternative mechanism, endoreplication, is employed toward similar goals. Endoreplication is an evolutionarily conserved cell cycle ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2018.02.006

    authors: Shu Z,Row S,Deng WM

    更新日期:2018-06-01 00:00:00

  • Caveolae: anchored, multifunctional platforms in the lipid ocean.

    abstract::The function of caveolae is hotly debated. It now seems clear that caveolae are stable membrane domains that are kept in place by the actin cytoskeleton. However, this stability can be perturbed, leading to caveolar internalization. Caveolae are important in the regulation of various signaling processes, such as nitri...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0962-8924(02)00039-9

    authors: van Deurs B,Roepstorff K,Hommelgaard AM,Sandvig K

    更新日期:2003-02-01 00:00:00

  • Surfing on a retrograde wave: how does Shiga toxin reach the endoplasmic reticulum?

    abstract::Bacterial Shiga toxin and related toxins are endocytosed by higher eukaryotic cells. The toxin protein is then transported via the Golgi apparatus to the endoplasmic reticulum (ER) and into the cytosol, where it exerts its toxic effect. This review discusses current understanding of this retrograde transport pathway a...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0962-8924(97)01209-9

    authors: Johannes L,Goud B

    更新日期:1998-04-01 00:00:00

  • Mitotic disassembly of the mammalian Golgi apparatus.

    abstract::A cell-free system that mimics mitotic fragmentation of Golgi stacks has provided a working model for the disassembly process. Two distinct pathways, one COP-dependent and one COP-independent, act on Golgi stacks to give rise to two types of end products: transport vesicles and larger, more heterogeneous vesicles and ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/s0962-8924(00)89094-7

    authors: Warren G,Levine T,Misteli T

    更新日期:1995-11-01 00:00:00

  • Dissecting clathrin-coated pits.

    abstract::In vitro cell biology has become an effective way to identify molecules responsible for membrane traffic. We have used this approach to study the assembly and budding of coated pits. So far our system has allowed us to identify a high-affinity binding site for the AP2 subunit on the inside surface of plasma membranes,...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/0962-8924(93)90205-f

    authors: Anderson RG

    更新日期:1993-06-01 00:00:00

  • Proteostasis impairment in protein-misfolding and -aggregation diseases.

    abstract::Cells possess an extensive network of components to safeguard proteome integrity and maintain protein homeostasis (proteostasis). When this proteostasis network (PN) declines in performance, as may be the case during aging, newly synthesized proteins are no longer able to fold efficiently and metastable proteins lose ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2014.05.003

    authors: Hipp MS,Park SH,Hartl FU

    更新日期:2014-09-01 00:00:00

  • Lysosomes nor Mice Move Forward without Borcs7.

    abstract::Lysosome function and position in the cytoplasm depends on the BORCS machinery, which tethers lysosomes to the kinesin microtubule motor. A recent paper of Snouwaert et al. in Cell Reports characterizes a mouse with a spontaneous mutation in the Borcs7 subunit, which causes axonal dystrophy and impaired motor function...

    journal_title:Trends in cell biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.tcb.2018.08.002

    authors: Joshi U,Houwman JA,van der Sluijs P

    更新日期:2018-10-01 00:00:00

  • Cell adhesion dynamics at endothelial junctions: VE-cadherin as a major player.

    abstract::The regulation of endothelial cell contacts is of central importance for the barrier function of the blood vessel wall and for the control of leukocyte extravasation. In addition, the plasticity of endothelial cell contacts is regulated during angiogenesis by growth factors, such as vascular endothelial growth factor ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2008.10.001

    authors: Vestweber D,Winderlich M,Cagna G,Nottebaum AF

    更新日期:2009-01-01 00:00:00

  • Classical and Nonclassical Intercellular Communication in Senescence and Ageing.

    abstract::Intercellular communication refers to the different ways through which cells communicate with each other and transfer a variety of messages. These communication methods involve a number of different processes that occur individually or simultaneously, which change depending on the physiological or pathological context...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2020.05.003

    authors: Fafián-Labora JA,O'Loghlen A

    更新日期:2020-08-01 00:00:00

  • MicroRNAs and neurodegeneration: role and impact.

    abstract::Neurodegenerative diseases are typically late-onset, progressive disorders that affect neural function and integrity. Although most attention has been focused on the genetic underpinnings of familial disease, mechanisms are likely to be shared with more predominant sporadic forms, which can be influenced by age, envir...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2012.08.013

    authors: Abe M,Bonini NM

    更新日期:2013-01-01 00:00:00

  • The Fas/APO-1 receptor and its deadly ligand.

    abstract::The cell surface receptor Fas/APO-1 and its ligand have recently been identified as important mediators of apoptosis. Both molecules are crucial for the maintenance of a sound immune system, and when defective they give rise to severe autoimmune disorders. Understanding the mechanism and regulation of Fas/APO-1-trigge...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/0962-8924(94)90102-3

    authors: Schulze-Osthoff K

    更新日期:1994-12-01 00:00:00

  • New regulatory mechanisms of TGF-beta receptor function.

    abstract::Transforming growth factor-beta (TGF-beta) regulates cell proliferation, differentiation and apoptosis, and TGF-beta-related proteins have key roles in development, tissue homeostasis and disease. Upon binding to their cell surface receptors, TGF-beta family proteins signal through Smads to induce changes in gene expr...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2009.05.008

    authors: Kang JS,Liu C,Derynck R

    更新日期:2009-08-01 00:00:00

  • Breaking glass?

    abstract::Why are women so under-represented at the top echelons of science? Why do so many drop out just as their careers should be blossoming? Are women in science being actively discriminated against by their peers, and, if, so what can be done about this? These were just a few of the puzzles reflected upon at a recent Europ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/s0962-8924(01)02182-1

    authors: Wilson EK

    更新日期:2001-11-01 00:00:00

  • On the Archaeal Origins of Eukaryotes and the Challenges of Inferring Phenotype from Genotype.

    abstract::If eukaryotes arose through a merger between archaea and bacteria, what did the first true eukaryotic cell look like? A major step toward an answer came with the discovery of Lokiarchaeum, an archaeon whose genome encodes small GTPases related to those used by eukaryotes to regulate membrane traffic. Although 'Loki' c...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2016.03.009

    authors: Dey G,Thattai M,Baum B

    更新日期:2016-07-01 00:00:00

  • ER-Phagy: Quality Control and Turnover of Endoplasmic Reticulum.

    abstract::The endoplasmic reticulum (ER) is the largest organelle in cells and has fundamental functions, such as folding, processing, and trafficking of proteins, cellular metabolism, and ion storage. To maintain its function, it is turned over constitutively, and even more actively under certain stress conditions. Quality con...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2020.02.001

    authors: Chino H,Mizushima N

    更新日期:2020-05-01 00:00:00

  • Orchestration of cell surface proteins by Rab11.

    abstract::The organization of cells into interconnected structures such as animal tissues requires a sophisticated system directing receptors and adhesion proteins to the cell surface. The Rab11 small G proteins (Rab11a, b, and Rab25) of the Ras superfamily are master regulators of the surface expression of receptors and adhesi...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2014.02.004

    authors: Welz T,Wellbourne-Wood J,Kerkhoff E

    更新日期:2014-07-01 00:00:00

  • A Novel Paradigm for Expert Core Facility Staff Training.

    abstract::Scientific research relies on a range of technologies, many of which are developing at a fast pace. Technical experts able to advise researchers on experimental design and validate the performance1 of shared instruments are increasingly recognized as critical members of the research community. Here I describe a novel ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/j.tcb.2020.06.001

    authors: Waters JC

    更新日期:2020-09-01 00:00:00

  • Principles of selective transport: coat complexes hold the key.

    abstract::The transport of protein through the secretory pathway of eukaryotic cells relies on small vesicular carriers, which mediate the movement of cargo between different compartments. Here, Meir Aridor and Bill Balch summarize what is currently known about the role of the cytosolic coat complexes in directing the formation...

    journal_title:Trends in cell biology

    pub_type: 杂志文章

    doi:10.1016/0962-8924(96)10027-1

    authors: Aridor M,Balch WE

    更新日期:1996-08-01 00:00:00

  • Replication licensing--defining the proliferative state?

    abstract::The proliferation of eukaryotic cells is a highly regulated process that depends on the precise duplication of chromosomal DNA in each cell cycle. Regulation of the replication licensing system, which promotes the assembly of complexes of proteins termed Mcm2-7 onto replication origins, is responsible for preventing r...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0962-8924(01)02203-6

    authors: Blow JJ,Hodgson B

    更新日期:2002-02-01 00:00:00

  • Oxidation of potassium channels by ROS: a general mechanism of aging and neurodegeneration?

    abstract::A wealth of evidence underscores the tight link between oxidative stress, neurodegeneration and aging. When the level of excess reactive oxygen species (ROS) increases in the cell, a phenomenon characteristic of aging, DNA is damaged, proteins are oxidized, lipids are degraded and more ROS are produced, all culminatin...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2009.09.008

    authors: Sesti F,Liu S,Cai SQ

    更新日期:2010-01-01 00:00:00

  • 'Disc-o-Fever': Getting Down with Giardia's Groovy Microtubule Organelle.

    abstract::Protists have evolved a myriad of highly specialized cytoskeletal organelles that expand known functional capacities of microtubule (MT) polymers. One such innovation - the ventral disc - is a cup-shaped MT organelle that the parasite Giardia uses to attach to the small intestine of its host. The molecular mechanisms ...

    journal_title:Trends in cell biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tcb.2017.10.007

    authors: Nosala C,Hagen KD,Dawson SC

    更新日期:2018-02-01 00:00:00