Cytoplasmic aggregation of DDX1 in developing embryos: Early embryonic lethality associated with Ddx1 knockout.

Abstract:

:Temporally-regulated maternal RNA translation is essential for embryonic development, with defective degradation resulting in stalled 2-cell embryos. We show that DDX1, a DEAD box protein implicated in RNA transport, may be a key regulator of maternal RNA utilization. DDX1 protein localizes exclusively to cytoplasmic granules in both oocytes and early stage mouse embryos, with DDX1 requiring RNA for retention at these sites. Homozygous knockout of Ddx1 causes stalling of mouse embryos at the 2-4 cell stages. These results suggest a maternal RNA-dependent role for DDX1 in the progression of embryos past the 2-4 cell stage. The change in appearance of DDX1-containing granules in developing embryos further supports a role in temporally-regulated degradation of RNAs. We carried out RNA-immunoprecipitations (RNA-IPs) to identify mRNAs bound to DDX1 in 2-cell embryos, focusing on 16 maternal genes previously shown to be essential for embryonic development past the 1- to 2-cell stages. Five of these RNAs were preferentially bound by DDX1: Ago2, Zar1, Tle6, Floped and Tif1α. We propose that DDX1 controls access to subsets of key maternal RNAs required for early embryonic development.

journal_name

Dev Biol

journal_title

Developmental biology

authors

Hildebrandt MR,Wang Y,Li L,Yasmin L,Glubrecht DD,Godbout R

doi

10.1016/j.ydbio.2019.07.014

subject

Has Abstract

pub_date

2019-11-15 00:00:00

pages

420-433

issue

2

eissn

0012-1606

issn

1095-564X

pii

S0012-1606(19)30180-0

journal_volume

455

pub_type

杂志文章
  • Mechanisms of mesendoderm internalization in the Xenopus gastrula: lessons from the ventral side.

    abstract::Two main processes are involved in driving ventral mesendoderm internalization in the Xenopus gastrula. First, vegetal rotation, an active movement of the vegetal cell mass, initiates gastrulation by rolling the peripheral blastocoel floor against the blastocoel roof. In this way, the leading edge of the internalized ...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.2001.0459

    authors: Ibrahim H,Winklbauer R

    更新日期:2001-12-01 00:00:00

  • Msx1 and Msx2 regulate survival of secondary heart field precursors and post-migratory proliferation of cardiac neural crest in the outflow tract.

    abstract::Msx1 and Msx2 are highly conserved, Nk-related homeodomain transcription factors that are essential for a variety of tissue-tissue interactions during vertebrate organogenesis. Here we show that combined deficiencies of Msx1 and Msx2 cause conotruncal anomalies associated with malalignment of the cardiac outflow tract...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2007.05.037

    authors: Chen YH,Ishii M,Sun J,Sucov HM,Maxson RE Jr

    更新日期:2007-08-15 00:00:00

  • Genetic analysis of melanophore development in zebrafish embryos.

    abstract::Vertebrate pigment cells are derived from neural crest, a tissue that also forms most of the peripheral nervous system and a variety of ectomesenchymal cell types. Formation of pigment cells from multipotential neural crest cells involves a number of common developmental processes. Pigment cells must be specified; the...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.2000.9840

    authors: Kelsh RN,Schmid B,Eisen JS

    更新日期:2000-09-15 00:00:00

  • Differential regenerative capacity of neonatal mouse hearts after cryoinjury.

    abstract::Neonatal mouse hearts fully regenerate after ventricular resection similar to adult zebrafish. We established cryoinjury models to determine if different types and varying degrees of severity in cardiac injuries trigger different responses in neonatal mouse hearts. In contrast to ventricular resection, neonatal mouse ...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2014.12.018

    authors: Darehzereshki A,Rubin N,Gamba L,Kim J,Fraser J,Huang Y,Billings J,Mohammadzadeh R,Wood J,Warburton D,Kaartinen V,Lien CL

    更新日期:2015-03-01 00:00:00

  • Tbx18 is essential for normal development of vasculature network and glomerular mesangium in the mammalian kidney.

    abstract::Tbx18 has been shown to be essential for ureteral development. However, it remains unclear whether it plays a direct role in kidney development. Here we addressed this by focusing on examining the pattern and contribution of Tbx18+ cells in the kidney and its role in kidney vascular development. Expression studies and...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2014.04.006

    authors: Xu J,Nie X,Cai X,Cai CL,Xu PX

    更新日期:2014-07-01 00:00:00

  • Ammonium transporter C of Dictyostelium discoideum is required for correct prestalk gene expression and for regulating the choice between slug migration and culmination.

    abstract::Ammonium transporter C (AmtC) is one of three transporters in Dictyostelium that have been proposed to regulate entry and exit of ammonia in a cell type dependent manner and to mediate ammonia signaling. Previous work demonstrated that disruption of the amtC gene results in a slugger phenotype in which the cells remai...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2005.08.043

    authors: Kirsten JH,Xiong Y,Dunbar AJ,Rai M,Singleton CK

    更新日期:2005-11-01 00:00:00

  • Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development.

    abstract::Vasa is a DEAD-box RNA helicase that functions in translational regulation of specific mRNAs. In many animals it is essential for germ line development and may have a more general stem cell role. Here we identify vasa in two sea urchin species and analyze the regulation of its expression. We find that vasa protein acc...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2007.11.039

    authors: Voronina E,Lopez M,Juliano CE,Gustafson E,Song JL,Extavour C,George S,Oliveri P,McClay D,Wessel G

    更新日期:2008-02-15 00:00:00

  • XNP-1/ATR-X acts with RB, HP1 and the NuRD complex during larval development in C. elegans.

    abstract::Mutations in the XNP/ATR-X gene cause several X-linked mental retardation syndromes in humans. The XNP/ATR-X gene encodes a DNA-helicase belonging to the SNF2 family. It has been proposed that XNP/ATR-X might be involved in chromatin remodelling. The lack of a mouse model for the ATR-X syndrome has, however, hampered ...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2004.10.014

    authors: Cardoso C,Couillault C,Mignon-Ravix C,Millet A,Ewbank JJ,Fontés M,Pujol N

    更新日期:2005-02-01 00:00:00

  • DSulfatase-1 fine-tunes Hedgehog patterning activity through a novel regulatory feedback loop.

    abstract::Sulfs are secreted sulfatases that catalyse removal of sulfate from Heparan Sulfate Proteoglycans (HSPGs) in the extracellular space. These enzymes are well known to regulate a number of crucial signalling pathways during development. In this study, we report that DSulfatase-1 (DSulf1), the unique Drosophila Sulf prot...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2011.07.027

    authors: Wojcinski A,Nakato H,Soula C,Glise B

    更新日期:2011-10-01 00:00:00

  • Syndecan-3 and syndecan-4 specifically mark skeletal muscle satellite cells and are implicated in satellite cell maintenance and muscle regeneration.

    abstract::Myogenesis in the embryo and the adult mammal consists of a highly organized and regulated sequence of cellular processes to form or repair muscle tissue that include cell proliferation, migration, and differentiation. Data from cell culture and in vivo experiments implicate both FGFs and HGF as critical regulators of...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.2001.0416

    authors: Cornelison DD,Filla MS,Stanley HM,Rapraeger AC,Olwin BB

    更新日期:2001-11-01 00:00:00

  • Epidermal growth factor inhibits morphogenesis and cell differentiation in cultured mouse embryonic teeth.

    abstract::Although local epithelial-mesenchymal tissue interactions which are presumably mediated by extracellular matrix molecules are important regulators of tooth morphogenesis and differentiation, our studies have indicated that these developmental processes also depend on circulating molecules. The iron-carrying serum prot...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(85)90437-3

    authors: Partanen AM,Ekblom P,Thesleff I

    更新日期:1985-09-01 00:00:00

  • Identification and partial characterization of yolk and cortical granule proteins in eggs and embryos of the starfish, Pisaster ochraceus.

    abstract::The unfertilized oocyte contains various granules which serve as storage sites for proteins, the majority which are yolk granules or platelets. Yolk granules are thought to provide the developing embryo with nutrients essential for its survival, while other granules contain proteins such as enzymes and extracellular m...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1995.1040

    authors: Reimer CL,Crawford BJ

    更新日期:1995-02-01 00:00:00

  • Photoreversible inhibition by ultraviolet light of germ line development in Smittia sp. (Chironomidae, Diptera).

    abstract::Pole cell formation in embryos of the parthenogenetic midge, Smittia sp., can be delayed or inhibited by irradiation of the posterior egg pole with ultraviolet light (uv). This leaves the schedule of nuclear divisions and chromosome eliminations virtually unaffected. However, uv irradiation delays the precocious migra...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(83)90236-1

    authors: von Brunn A,Kalthoff K

    更新日期:1983-12-01 00:00:00

  • Characterization and regulation of insulin binding by embryonic chick heart cells.

    abstract::We have compared insulin binding by heart cells at 7 and 14 days of development. Species specificity, optimum pH, temperature relationships, and time to equilibrium for binding of insulin were the same in both 7 and 14-day systems. Curvilinear Scatchard plots for chicken insulin binding were demonstrated. Binding affi...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(81)90410-3

    authors: Serravezza JC,Wheeler FB,DeHaan RL,Elsas LJ

    更新日期:1981-06-01 00:00:00

  • Myosin heavy chain expression in embryonic cardiac cell cultures.

    abstract::Chick embryonic heart cell isolates and monolayer cultures were prepared from atria and ventricles at selected stages of cardiac development. The cardiac myocytes were assayed for myosin heavy chain (MHC) content using monoclonal antibodies (McAbs) specific in the heart for atrial (B-1), ventricular (ALD-19), or condu...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(86)90241-1

    authors: Zadeh BJ,González-Sánchez A,Fischman DA,Bader DM

    更新日期:1986-05-01 00:00:00

  • Teloplasm formation in a leech, Helobdella triserialis, is a microtubule-dependent process.

    abstract::Fertilized eggs of the leech Helobdella triserialis undergo a cytoplasmic reorganization which generates domains of nonyolky cytoplasm, called teloplasm, at the animal and vegetal poles. The segregation of teloplasm to one cell of the eight-cell embryo is responsible for a unique developmental fate of that cell, i.e.,...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(89)90181-4

    authors: Astrow SH,Holton B,Weisblat DA

    更新日期:1989-10-01 00:00:00

  • Scalloped a member of the Hippo tumor suppressor pathway controls mushroom body size in Drosophila brain by non-canonical regulation of neuroblast proliferation.

    abstract::Cell proliferation, growth and survival are three different basic processes which converge at determining a fundamental property -the size of an organism. Scalloped (Sd) is the first characterised transcriptional partner to Yorkie (Yki), the downstream effector of the Hippo pathway which is a highly potential and evol...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2017.10.016

    authors: Rohith BN,Shyamala BV

    更新日期:2017-12-15 00:00:00

  • Postnatal myosin heavy chain isoform expression in normal mice and mice null for IIb or IId myosin heavy chains.

    abstract::The patterns of myosin heavy chain (MyHC) isoform expression in the embryo and in the adult mouse are reasonably well characterized and quite distinct. However, little is known about the transition between these two states, which involves major decreases and increases in the expression of several MyHC genes. In the pr...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.2000.9974

    authors: Allen DL,Leinwand LA

    更新日期:2001-01-15 00:00:00

  • A novel mode of tangential migration of cortical projection neurons.

    abstract::Projection neurons of the developing cerebral cortex are generated in the cerebral ventricular zone and subsequently move to the developing cortical plate via radial migration. Conversely, most inhibitory interneurons originate in the ganglionic eminences and enter the developing cortical plate by tangential migration...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2006.06.040

    authors: Britanova O,Alifragis P,Junek S,Jones K,Gruss P,Tarabykin V

    更新日期:2006-10-01 00:00:00

  • Organotypic differentiation of trypsin-dissociated fetal rat intestine.

    abstract::These studies examined the potential for reorganization and differentiation of dissociated 18-day fetal rat intestine. Cultures of trypsin-dissociated fetal intestine were maintained in vitro for 1 week on a three-dimensional matrix, then transplanted into syngeneic hosts. When harvested after 4 weeks, these transplan...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(83)90209-9

    authors: Montgomery RK,Zinman HM,Smith BT

    更新日期:1983-11-01 00:00:00

  • Increased sensitivity and clustering of elementary Ca2+ release events during oocyte maturation.

    abstract::The universal signal for egg activation at fertilization is a rise in cytoplasmic Ca(2+) with defined spatial and temporal kinetics. Mammalian and amphibian eggs acquire the ability to produce such Ca(2+) signals during a maturation period that precedes fertilization and encompasses resumption of meiosis and progressi...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2004.08.004

    authors: Machaca K

    更新日期:2004-11-01 00:00:00

  • AMPK regulation of mouse oocyte meiotic resumption in vitro.

    abstract::We have previously shown that the adenosine analog 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranoside (AICAR), an activator of AMP-activated protein kinase (AMPK), stimulates an increase in AMPK activity and induces meiotic resumption in mouse oocytes [Downs, S.M., Hudson, E.R., Hardie, D.G., 2002. A potential rol...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2005.11.039

    authors: Chen J,Hudson E,Chi MM,Chang AS,Moley KH,Hardie DG,Downs SM

    更新日期:2006-03-15 00:00:00

  • The extracellular matrix dimension of skeletal muscle development.

    abstract::Cells anchor to substrates by binding to extracellular matrix (ECM). In addition to this anchoring function however, cell-ECM binding is a mechanism for cells to sense their surroundings and to communicate and coordinate behaviour amongst themselves. Several ECM molecules and their receptors play essential roles in mu...

    journal_title:Developmental biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.ydbio.2011.03.015

    authors: Thorsteinsdóttir S,Deries M,Cachaço AS,Bajanca F

    更新日期:2011-06-15 00:00:00

  • The basal position of nuclei is one pre-requisite for asymmetric cell divisions in the early mouse embryo.

    abstract::The early mouse embryo undertakes two types of cell division: symmetric that gives rise to the trophectoderm and then placenta or asymmetric that gives rise to inner cells that generate the embryo proper. Although cell division orientation is important, the mechanism regulating it has remained unclear. Here, we identi...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2014.05.009

    authors: Ajduk A,Biswas Shivhare S,Zernicka-Goetz M

    更新日期:2014-08-15 00:00:00

  • Axis determination in polyspermic Xenopus laevis eggs.

    abstract::Polyspermic Xenopus laevis eggs can be identified easily because of regions of pigment accumulation and white stripes, which arise by a nocodazole-sensitive process. Eggs containing up to four sperm are capable of forming a single embryonic axis. Dispermic eggs display two regions of pigment accumulation, one around e...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(86)90262-9

    authors: Render JA,Elinson RP

    更新日期:1986-06-01 00:00:00

  • Imprinted expression in cystic embryoid bodies shows an embryonic and not an extra-embryonic pattern.

    abstract::A large subset of mammalian imprinted genes show extra-embryonic lineage (EXEL) specific imprinted expression that is restricted to placental trophectoderm lineages and to visceral yolk sac endoderm (ysE). Isolated ysE provides a homogenous in vivo model of a mid-gestation extra-embryonic tissue to examine the mechani...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2015.04.010

    authors: Kulinski TM,Casari MR,Guenzl PM,Wenzel D,Andergassen D,Hladik A,Datlinger P,Farlik M,Theussl HC,Penninger JM,Knapp S,Bock C,Barlow DP,Hudson QJ

    更新日期:2015-06-15 00:00:00

  • Osteogenic cell lineage analysis is facilitated by organ cultures of embryonic chick periosteum.

    abstract::Monoclonal antibodies against the surface of embryonic osteogenic cells (SB-1, SB-2, SB-3, and SB-5) have been used to characterize the sequence of transitions involved in the osteogenic cell lineage. In the present study, immunohistochemical analyses of the expression of osteogenic cell surface antigens in organ cult...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/0012-1606(90)90388-y

    authors: Bruder SP,Caplan AI

    更新日期:1990-10-01 00:00:00

  • Expression of platelet-derived growth factor (PDGF) and PDGF alpha- and beta-receptors in the peripheral nervous system: an analysis of sciatic nerve and dorsal root ganglia.

    abstract::Previous studies have shown that cultured Schwann cells secrete platelet-derived growth factor (PDGF) and express PDGF receptors which transmit a mitogenic response particularly when their levels are upregulated by elevation of intracellular cAMP. In this study the expression of PDGF and PDGF alpha- and beta-receptors...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1006/dbio.1993.1044

    authors: Eccleston PA,Funa K,Heldin CH

    更新日期:1993-02-01 00:00:00

  • Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair.

    abstract::Actin-related protein 5 (ARP5) is a conserved subunit of the INO80 chromatin-remodeling complex in yeast and mammals. We have characterized the expression and subcellular distribution of Arabidopsis thaliana ARP5 and explored its role in the epigenetic control of multicellular development and DNA repair. ARP5-specific...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2009.08.006

    authors: Kandasamy MK,McKinney EC,Deal RB,Smith AP,Meagher RB

    更新日期:2009-11-01 00:00:00

  • Visualizing digestive organ morphology and function using differential fatty acid metabolism in live zebrafish.

    abstract::Lipids are essential for cellular function as sources of fuel, critical signaling molecules and membrane components. Deficiencies in lipid processing and transport underlie many metabolic diseases. To better understand metabolic function as it relates to disease etiology, a whole animal approach is advantageous, one i...

    journal_title:Developmental biology

    pub_type: 杂志文章

    doi:10.1016/j.ydbio.2011.09.010

    authors: Carten JD,Bradford MK,Farber SA

    更新日期:2011-12-15 00:00:00