Single cell stable isotope probing in microbiology using Raman microspectroscopy.

Abstract:

:Microbial communities are essential for most ecosystem processes and interact in highly complex ways with virtually all eukaryotes. Thus, a detailed understanding of the function of such communities is a fundamental prerequisite for microbial ecologists, applied microbiologists and microbiome researchers. Using single cell Raman microspectroscopy, biochemical fingerprints of individual microbial cells can be obtained in an externally label-free and non-destructive manner. If combined with stable isotope probing (SIP), Raman spectroscopy can directly reveal functions of single microorganisms in their natural habitat. This review provides an update on various SIP-approaches suitable for combination with different Raman scattering techniques and illustrates how single cell Raman SIP can be directly combined with the omics-centric analysis pipelines to investigate microbial communities.

journal_name

Curr Opin Biotechnol

authors

Wang Y,Huang WE,Cui L,Wagner M

doi

10.1016/j.copbio.2016.04.018

subject

Has Abstract

pub_date

2016-10-01 00:00:00

pages

34-42

eissn

0958-1669

issn

1879-0429

pii

S0958-1669(16)30126-4

journal_volume

41

pub_type

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