Two-hybrid technologies in proteomics research.

Abstract:

:Given that protein-protein interactions (PPIs) regulate nearly every living process; the exploration of global and pathway-specific protein interaction networks is expected to have major implications in the understanding of diseases and for drug discovery. Consequently, the development and application of methodologies that address physical associations among proteins is of major importance in today's proteomics research. The most widely and successfully used methodology to assess PPIs is the yeast two-hybrid system (YTH). Here we present an overview on the current applications of YTH and variant technologies in yeast and mammalian systems. Two-hybrid-based methods will not only continue to have a dominant role in the assessment of protein interactomes but will also become important in the development of novel compounds that target protein interaction interfaces for therapeutic intervention.

journal_name

Curr Opin Biotechnol

authors

Suter B,Kittanakom S,Stagljar I

doi

10.1016/j.copbio.2008.06.005

subject

Has Abstract

pub_date

2008-08-01 00:00:00

pages

316-23

issue

4

eissn

0958-1669

issn

1879-0429

pii

S0958-1669(08)00075-X

journal_volume

19

pub_type

杂志文章,评审
  • Novel perspectives for the engineering of abiotic stress tolerance in plants.

    abstract::Adverse environmental conditions pose serious limitations to agricultural production. Classical biotechnological approaches towards increasing abiotic stress tolerance focus on boosting plant endogenous defence mechanisms. However, overexpression of regulatory elements or effectors is usually accompanied by growth han...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2013.09.011

    authors: Cabello JV,Lodeyro AF,Zurbriggen MD

    更新日期:2014-04-01 00:00:00

  • Decaying signals: will understanding bacterial-plant communications lead to control of soft rot?

    abstract::Soft rot pathogens cause significant losses worldwide in fruit and vegetable production during the growing season and after harvest. These pathogens engage in molecular interactions with their plant hosts via acyl-homoserine lactone (AHL) quorum sensing, pectin metabolites, phenolic acids, and auxin. The AHL-based int...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2009.01.005

    authors: Charkowski AO

    更新日期:2009-04-01 00:00:00

  • Antisense technology in molecular and cellular bioengineering.

    abstract::Antisense technology is finding increasing application not only in clinical development, but also for cellular engineering. Several types of antisense methods (e.g. antisense oligonucleotides, antisense RNA and small interfering RNA) can be used to inhibit the expression of a target gene. These antisense methods are b...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(03)00115-0

    authors: Lee LK,Roth CM

    更新日期:2003-10-01 00:00:00

  • Globin gene switching: a paradigm or what?

    abstract::The delineation of the beta-globin locus control region has led to a new understanding of the developmental regulation of the beta-globin gene cluster. It now seems that globin gene switching is effected through the sequential and mutually exclusive interaction of the locus control region with the embryonic, fetal and...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(05)80108-9

    authors: Enver T,Greaves DR

    更新日期:1991-12-01 00:00:00

  • Advances in the clinical translation of nanotechnology.

    abstract::The use of novel materials in the nano-scale size range for applications in devices, drugs and diagnostic agents comes with a number of new opportunities, and also serious challenges to human applications. The larger size of particulate-based agents, as compared to traditional drugs, allows for the significant advanta...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.01.002

    authors: Scheinberg DA,Grimm J,Heller DA,Stater EP,Bradbury M,McDevitt MR

    更新日期:2017-08-01 00:00:00

  • Discovery of new enzymatic functions and metabolic pathways using genomic enzymology web tools.

    abstract::The continuing expansion of protein and genome sequence databases is an opportunity to identify novel enzymes with biotechnological applications. Whether applied to enzymology, chemical biology, systems biology, and microbiology, database mining must be 'user-friendly' so that experimentalists can devise focused strat...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2020.12.004

    authors: Zallot R,Oberg N,Gerlt JA

    更新日期:2021-01-05 00:00:00

  • Engineering carbon fixation with artificial protein organelles.

    abstract::Based on projections for global population growth, current techniques for improving agricultural yields will not be able to address future demands for major food crops. Improving photosynthetic efficiency by engineering carbon fixation has been identified as one of the most important approaches for increasing agricult...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.01.004

    authors: Giessen TW,Silver PA

    更新日期:2017-08-01 00:00:00

  • Environmental monitoring using autonomous vehicles: a survey of recent searching techniques.

    abstract::Autonomous vehicles are becoming an essential tool in a wide range of environmental applications that include ambient data acquisition, remote sensing, and mapping of the spatial extent of pollutant spills. Among these applications, pollution source localization has drawn increasing interest due to its scientific and ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.01.009

    authors: Bayat B,Crasta N,Crespi A,Pascoal AM,Ijspeert A

    更新日期:2017-06-01 00:00:00

  • Current strategies for cell delivery in cartilage and bone regeneration.

    abstract::Several cell-based tissue-engineering therapies are emerging to regenerate damaged tissues. These strategies use autologous cells in combination with bioresorbable delivery materials. Major functions of a delivery scaffold are to provide initial mechanical stability, homogenous three-dimensional cell distribution, imp...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2004.08.010

    authors: Sittinger M,Hutmacher DW,Risbud MV

    更新日期:2004-10-01 00:00:00

  • Local sequence-structure correlations in proteins.

    abstract::Considerable progress has been made in understanding the relationship between local amino acid sequence and local protein structure. Recent highlights include numerous studies of the structures adopted by short peptides, new approaches to correlating sequence patterns with structure patterns, and folding simulations u...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(96)80117-0

    authors: Bystroff C,Simons KT,Han KF,Baker D

    更新日期:1996-08-01 00:00:00

  • Tracing metabolic flux through time and space with isotope labeling experiments.

    abstract::Metabolism is dynamic and must function in context-specific ways to adjust to changes in the surrounding cellular and ecological environment. When isotopic tracers are used, metabolite flow (i.e. metabolic flux) can be quantified through biochemical networks to assess metabolic pathway operation. The cellular activiti...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2019.11.003

    authors: Allen DK,Young JD

    更新日期:2020-08-01 00:00:00

  • Bacterial biofilms.

    abstract::Over the review period, a significant amount of literature has been published documenting the impact of biofilms on engineered and biomedical systems. Reactor systems and analytical techniques have evolved to study the molecular chemistry and microbial ecology within biofilm layers only tens of micrometers thick, and ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(93)90125-g

    authors: Bryers JD

    更新日期:1993-04-01 00:00:00

  • The Silicon Cell initiative: working towards a detailed kinetic description at the cellular level.

    abstract::The Silicon Cell initiative aims to understand cellular systems on the basis of the characteristics of their components. As a tool to achieve this, detailed kinetic models at the network reaction level are being constructed. Such detailed kinetic models are extremely useful for medical and biotechnological application...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2005.05.003

    authors: Snoep JL

    更新日期:2005-06-01 00:00:00

  • Recent trends in nanopores for biotechnology.

    abstract::Nanopore technology employs a nanoscale hole in an insulating membrane to stochastically sense with high throughput individual biomolecules in solution. The generality of the nanopore detection principle and the ease of single-molecule detection suggest many potential applications of nanopores in biotechnology. Recent...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.11.008

    authors: Stoloff DH,Wanunu M

    更新日期:2013-08-01 00:00:00

  • Bacterial persistence from a system-level perspective.

    abstract::In recent years, our understanding about bacterial persistence has significantly advanced: we comprehend the persister phenotype better, more triggers for persistence entry have been found, and more insights in the involvement and role of toxin-antitoxin systems and other molecular mechanisms have been unravelled. In ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.02.012

    authors: Radzikowski JL,Schramke H,Heinemann M

    更新日期:2017-08-01 00:00:00

  • Lignin biosynthesis and its integration into metabolism.

    abstract::Lignin is a principal structural component of cell walls in higher terrestrial plants. It reinforces the cell walls, facilitates water transport, and acts as a physical barrier to pathogens. Lignin is typically described as being composed of p-hydroxyphenyl (H), guaiacyl (G), and syringyl (S) units that derive from th...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2019.02.018

    authors: Vanholme R,De Meester B,Ralph J,Boerjan W

    更新日期:2019-04-01 00:00:00

  • T-cell receptor peptide-MHC interactions: biological lessons from structural studies.

    abstract::Fifteen years have passed since T-cell receptor (TCR) genes were identified (reviewed in [1]). Unlike the situation for antibodies, no direct structural information on the TCR proteins has been available for most of this time. Recently, however, the crystal structures of isolated alpha and beta chains were determined,...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(98)80004-9

    authors: Garcia KC,Teyton L

    更新日期:1998-08-01 00:00:00

  • Plantibodies: applications, advantages and bottlenecks.

    abstract::Various strategies have been developed to exploit plants as bioreactors for the production of pharmaceutical antibodies, to engineer antibody-mediated pathogen resistance or to alter the plant phenotype by immunomodulation. Recent research developments focus on the fine-tuning of expression systems and the detailed ch...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(02)00303-8

    authors: Stoger E,Sack M,Fischer R,Christou P

    更新日期:2002-04-01 00:00:00

  • Engineered fatty acid catabolism for fuel and chemical production.

    abstract::Fatty acid oxidation pathways are attractive for metabolic engineering purposes due to their cyclic nature as well as their reactions that allow for the selective functionalization of alkyl chains. These characteristics allow for the production of various chemicals, such as alcohols, alkanes, ketones and hydroxyacids,...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2016.07.004

    authors: Kim S,Cheong S,Chou A,Gonzalez R

    更新日期:2016-12-01 00:00:00

  • Ligand-binding domain of estrogen receptors.

    abstract::Estrogen receptors are multi-domain proteins that interact with other proteins and DNA to fulfil their function: the regulation of transcription. During the past 2-3 years, our understanding of this complex process has increased tremendously as crystal structures of isolated ligand-binding domains in complex with vari...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(99)00034-8

    authors: Mueller-Fahrnow A,Egner U

    更新日期:1999-12-01 00:00:00

  • Heterologous biosynthesis as a platform for producing new generation natural products.

    abstract::Natural products have demonstrated value across numerous application areas, with antibiotics a notable historical example. Native cellular hosts provide an initial option in efforts to harness natural product production. However, various complexities associated with native hosts, including fastidious growth traits and...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2020.06.014

    authors: Park D,Swayambhu G,Pfeifer BA

    更新日期:2020-12-01 00:00:00

  • Metabolic flux analysis in eukaryotes.

    abstract::Metabolic flux analysis (MFA) represents a powerful tool for systems biology research on eukaryotic cells. This review describes recent advances, the challenges as well as applications of metabolic flux analysis comprising fungi, mammalian cells and plants. While MFA is widely established and applied in microorganisms...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.01.011

    authors: Niklas J,Schneider K,Heinzle E

    更新日期:2010-02-01 00:00:00

  • In situ treatment of PCBs by anaerobic microbial dechlorination in aquatic sediment: are we there yet?

    abstract::The remediation of polychlorinated biphenyls (PCBs) in soils and sediments remains a particularly difficult problem to solve. The possibility of in situ degradation by microorganisms has been pursued for many years since this approach has the potential to provide a cost-effective and environmentally sustainable altern...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.10.004

    authors: Sowers KR,May HD

    更新日期:2013-06-01 00:00:00

  • Systems biology of yeast: enabling technology for development of cell factories for production of advanced biofuels.

    abstract::Transportation fuels will gradually shift from oil based fuels towards alternative fuel resources like biofuels. Current bioethanol and biodiesel can, however, not cover the increasing demand for biofuels and there is therefore a need for advanced biofuels with superior fuel properties. Novel cell factories will provi...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.11.021

    authors: de Jong B,Siewers V,Nielsen J

    更新日期:2012-08-01 00:00:00

  • Constructing immortalized human cell lines.

    abstract::Obtaining an abundant supply of human cells with specific differentiated properties is a key issue in many research studies and biotechnology applications. Recent advances in this area include the finding that forced expression of the enzyme telomerase can greatly increase the proliferative potential of at least some ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(99)00011-7

    authors: Yeager TR,Reddel RR

    更新日期:1999-10-01 00:00:00

  • Designer microbes for biosynthesis.

    abstract::Microbes have long been adapted for the biosynthetic production of useful compounds. There is increasing demand for the rapid and cheap microbial production of diverse molecules in an industrial setting. Microbes can now be designed and engineered for a particular biosynthetic purpose, thanks to recent developments in...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.02.014

    authors: Quin MB,Schmidt-Dannert C

    更新日期:2014-10-01 00:00:00

  • Human-on-chip for therapy development and fundamental science.

    abstract::Organ-on-chip systems integrate microfluidic technology and living cells to study human physiology and pathophysiology. These human in vitro models are promising substitutes for animal testing, and their small scale enables precise control of culture conditions and high-throughput experiments, which would not be econo...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2013.08.015

    authors: Luni C,Serena E,Elvassore N

    更新日期:2014-02-01 00:00:00

  • Engineering nanoreactors using bacterial microcompartment architectures.

    abstract::Bacterial microcompartments (BMCs) are organelles that encapsulate enzymes involved in CO2 fixation or carbon catabolism in a selectively permeable protein shell. Here, we highlight recent advances in the bioengineering of these protein-based nanoreactors in heterologous systems, including transfer and expression of B...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.09.005

    authors: Plegaria JS,Kerfeld CA

    更新日期:2018-06-01 00:00:00

  • Microorganisms relevant to bioremediation.

    abstract::Naturally occurring microbial consortia have been utilized in a variety of bioremediation processes. Recent developments in molecular microbial ecology offer new tools that facilitate molecular analyses of microbial populations at contaminated and bioremediated sites. Information provided by such analyses aids in the ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00205-6

    authors: Watanabe K

    更新日期:2001-06-01 00:00:00

  • Bioactive fungal polysaccharides as potential functional ingredients in food and nutraceuticals.

    abstract::Fungal bioactive polysaccharides deriving mainly from the Basidiomycetes family (and some from the Ascomycetes) and medicinal mushrooms have been well known and widely used in far Asia as part of traditional diet and medicine, and in the last decades have been the core of intense research for the understanding and the...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.01.010

    authors: Giavasis I

    更新日期:2014-04-01 00:00:00