In vivo assembly and trafficking of olfactory Ionotropic Receptors.

Abstract:

BACKGROUND:Ionotropic receptors (IRs) are a large, divergent subfamily of ionotropic glutamate receptors (iGluRs) that are expressed in diverse peripheral sensory neurons and function in olfaction, taste, hygrosensation and thermosensation. Analogous to the cell biological properties of their synaptic iGluR ancestors, IRs are thought to form heteromeric complexes that localise to the ciliated dendrites of sensory neurons. IR complexes are composed of selectively expressed 'tuning' receptors and one of two broadly expressed co-receptors (IR8a or IR25a). While the extracellular ligand-binding domain (LBD) of tuning IRs is likely to define the stimulus specificity of the complex, the role of this domain in co-receptors is unclear. RESULTS:We identify a sequence in the co-receptor LBD, the 'co-receptor extra loop' (CREL), which is conserved across IR8a and IR25a orthologues but not present in either tuning IRs or iGluRs. The CREL contains a single predicted N-glycosylation site, which we show bears a sugar modification in recombinantly expressed IR8a. Using the Drosophila olfactory system as an in vivo model, we find that a transgenically encoded IR8a mutant in which the CREL cannot be N-glycosylated is impaired in localisation to cilia in some, though not all, populations of sensory neurons expressing different tuning IRs. This defect can be complemented by the presence of endogenous wild-type IR8a, indicating that IR complexes contain at least two IR8a subunits and that this post-translational modification is dispensable for protein folding or complex assembly. Analysis of the subcellular distribution of the mutant protein suggests that its absence from sensory cilia is due to a failure in exit from the endoplasmic reticulum. Protein modelling and in vivo analysis of tuning IR and co-receptor subunit interactions by a fluorescent protein fragment complementation assay reveal that the CREL N-glycosylation site is likely to be located on the external face of a heterotetrameric IR complex. CONCLUSIONS:Our data reveal an important role for the IR co-receptor LBD in control of intracellular transport, provide novel insights into the stoichiometry and assembly of IR complexes and uncover an unexpected heterogeneity in the trafficking regulation of this sensory receptor family.

journal_name

BMC Biol

journal_title

BMC biology

authors

Abuin L,Prieto-Godino LL,Pan H,Gutierrez C,Huang L,Jin R,Benton R

doi

10.1186/s12915-019-0651-7

subject

Has Abstract

pub_date

2019-04-17 00:00:00

pages

34

issue

1

issn

1741-7007

pii

10.1186/s12915-019-0651-7

journal_volume

17

pub_type

杂志文章
  • Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread.

    abstract:BACKGROUND:Increasing evidence suggests that influenza reassortment not only contributes to the emergence of new human pandemics but also plays an important role in seasonal influenza epidemics, disease severity, evolution, and vaccine efficacy. We studied this process within 2091 H3N2 full genomes utilizing a combinat...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-016-0337-3

    authors: Maljkovic Berry I,Melendrez MC,Li T,Hawksworth AW,Brice GT,Blair PJ,Halsey ES,Williams M,Fernandez S,Yoon IK,Edwards LD,Kuschner R,Lin X,Thomas SJ,Jarman RG

    更新日期:2016-12-29 00:00:00

  • A metabolic signature of long life in Caenorhabditis elegans.

    abstract:BACKGROUND:Many Caenorhabditis elegans mutations increase longevity and much evidence suggests that they do so at least partly via changes in metabolism. However, up until now there has been no systematic investigation of how the metabolic networks of long-lived mutants differ from those of normal worms. Metabolomic te...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/1741-7007-8-14

    authors: Fuchs S,Bundy JG,Davies SK,Viney JM,Swire JS,Leroi AM

    更新日期:2010-02-10 00:00:00

  • Q&A: What are exosomes, exactly?

    abstract::Exosomes are extracellular vesicles first described as such 30 years ago and since implicated in cell-cell communication and the transmission of disease states, and explored as a means of drug discovery. Yet fundamental questions about their biology remain unanswered. Here I explore what exosomes are, highlight the di...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-016-0268-z

    authors: Edgar JR

    更新日期:2016-06-13 00:00:00

  • The mono-ADP-ribosyltransferase ARTD10 regulates the voltage-gated K+ channel Kv1.1 through protein kinase C delta.

    abstract:BACKGROUND:ADP-ribosylation is a ubiquitous post-translational modification that involves both mono- and poly-ADP-ribosylation. ARTD10, also known as PARP10, mediates mono-ADP-ribosylation (MARylation) of substrate proteins. A previous screen identified protein kinase C delta (PKCδ) as a potential ARTD10 substrate, amo...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-020-00878-1

    authors: Tian Y,Korn P,Tripathi P,Komnig D,Wiemuth D,Nikouee A,Classen A,Bolm C,Falkenburger BH,Lüscher B,Gründer S

    更新日期:2020-10-15 00:00:00

  • Targeting protein quality control pathways in breast cancer.

    abstract::The efficient production, folding, and secretion of proteins is critical for cancer cell survival. However, cancer cells thrive under stress conditions that damage proteins, so many cancer cells overexpress molecular chaperones that facilitate protein folding and target misfolded proteins for degradation via the ubiqu...

    journal_title:BMC biology

    pub_type: 杂志文章,评审

    doi:10.1186/s12915-017-0449-4

    authors: Sannino S,Brodsky JL

    更新日期:2017-11-16 00:00:00

  • Gene expression in cortex and hippocampus during acute pneumococcal meningitis.

    abstract:BACKGROUND:Pneumococcal meningitis is associated with high mortality (approximately 30%) and morbidity. Up to 50% of survivors are affected by neurological sequelae due to a wide spectrum of brain injury mainly affecting the cortex and hippocampus. Despite this significant disease burden, the genetic program that regul...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/1741-7007-4-15

    authors: Coimbra RS,Voisin V,de Saizieu AB,Lindberg RL,Wittwer M,Leppert D,Leib SL

    更新日期:2006-06-02 00:00:00

  • Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize.

    abstract:BACKGROUND:A genome-wide association study (GWAS) is the foremost strategy used for finding genes that control human diseases and agriculturally important traits, but it often reports false positives. In contrast, its complementary method, linkage analysis, provides direct genetic confirmation, but with limited resolut...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-015-0187-4

    authors: Li C,Li Y,Bradbury PJ,Wu X,Shi Y,Song Y,Zhang D,Rodgers-Melnick E,Buckler ES,Zhang Z,Li Y,Wang T

    更新日期:2015-09-21 00:00:00

  • Wnt5 signaling in vertebrate pancreas development.

    abstract:BACKGROUND:Signaling by the Wnt family of secreted glycoproteins through their receptors, the frizzled (Fz) family of seven-pass transmembrane proteins, is critical for numerous cell fate and tissue polarity decisions during development. RESULTS:We report a novel role of Wnt signaling in organogenesis using the format...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/1741-7007-3-23

    authors: Kim HJ,Schleiffarth JR,Jessurun J,Sumanas S,Petryk A,Lin S,Ekker SC

    更新日期:2005-10-24 00:00:00

  • Spatial-temporal targeting of lung-specific mesenchyme by a Tbx4 enhancer.

    abstract:BACKGROUND:Reciprocal interactions between lung mesenchymal and epithelial cells play essential roles in lung organogenesis and homeostasis. Although the molecular markers and related animal models that target lung epithelial cells are relatively well studied, molecular markers of lung mesenchymal cells and the genetic...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/1741-7007-11-111

    authors: Zhang W,Menke DB,Jiang M,Chen H,Warburton D,Turcatel G,Lu CH,Xu W,Luo Y,Shi W

    更新日期:2013-11-13 00:00:00

  • Precise A•T to G•C base editing in the zebrafish genome.

    abstract:BACKGROUND:Base editors are a class of genome editing tools with the ability to efficiently induce point mutations in genomic DNA, without inducing double-strand breaks or relying on homology-direct repair as in other such technologies. Recently, adenine base editors (ABEs) have been developed to mediate the conversion...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-018-0609-1

    authors: Qin W,Lu X,Liu Y,Bai H,Li S,Lin S

    更新日期:2018-11-20 00:00:00

  • A modern circadian clock in the common angiosperm ancestor of monocots and eudicots.

    abstract::The circadian clock enhances fitness through temporal organization of plant gene expression, metabolism and physiology. Two recent studies, one in BMC Evolutionary Biology, demonstrate through phylogenetic analysis of the CCA1/LHY and TOC1/PRR gene families that the common ancestor of monocots and eudicots had compone...

    journal_title:BMC biology

    pub_type: 评论,杂志文章,评审

    doi:10.1186/1741-7007-8-55

    authors: McClung CR

    更新日期:2010-05-07 00:00:00

  • Modeling the within-host dynamics of HIV infection.

    abstract::The new field of viral dynamics, based on within-host modeling of viral infections, began with models of human immunodeficiency virus (HIV), but now includes many viral infections. Here we review developments in HIV modeling, emphasizing quantitative findings about HIV biology uncovered by studying acute infection, th...

    journal_title:BMC biology

    pub_type: 杂志文章,评审

    doi:10.1186/1741-7007-11-96

    authors: Perelson AS,Ribeiro RM

    更新日期:2013-09-03 00:00:00

  • The intestinal microbiota regulates host cholesterol homeostasis.

    abstract:BACKGROUND:Management of blood cholesterol is a major focus of efforts to prevent cardiovascular diseases. The objective of this study was to investigate how the gut microbiota affects host cholesterol homeostasis at the organism scale. RESULTS:We depleted the intestinal microbiota of hypercholesterolemic female Apoe-...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-019-0715-8

    authors: Le Roy T,Lécuyer E,Chassaing B,Rhimi M,Lhomme M,Boudebbouze S,Ichou F,Haro Barceló J,Huby T,Guerin M,Giral P,Maguin E,Kapel N,Gérard P,Clément K,Lesnik P

    更新日期:2019-11-27 00:00:00

  • The golgin coiled-coil proteins capture different types of transport carriers via distinct N-terminal motifs.

    abstract:BACKGROUND:The internal organization of cells depends on mechanisms to ensure that transport carriers, such as vesicles, fuse only with the correct destination organelle. Several types of proteins have been proposed to confer specificity to this process, and we have recently shown that a set of coiled-coil proteins on ...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-016-0345-3

    authors: Wong M,Gillingham AK,Munro S

    更新日期:2017-01-26 00:00:00

  • Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway.

    abstract:BACKGROUND:Many pathogens secrete toxins that target key host processes resulting in the activation of immune pathways. The secreted Pseudomonas aeruginosa toxin Exotoxin A (ToxA) disrupts intestinal protein synthesis, which triggers the induction of a subset of P. aeruginosa-response genes in the nematode Caenorhabdit...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-016-0334-6

    authors: McEwan DL,Feinbaum RL,Stroustrup N,Haas W,Conery AL,Anselmo A,Sadreyev R,Ausubel FM

    更新日期:2016-12-07 00:00:00

  • Repetitive elements in parasitic protozoa.

    abstract::A recent paper published in BMC Genomics suggests that retrotransposition may be active in the human gut parasite Entamoeba histolytica. This adds to our knowledge of the various types of repetitive elements in parasitic protists and the potential influence of such elements on pathogenicity. ...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/1741-7007-8-64

    authors: Clayton C

    更新日期:2010-05-24 00:00:00

  • Novel developmental bases for the evolution of hypobranchial muscles in vertebrates.

    abstract:BACKGROUND:Vertebrates are characterized by possession of hypobranchial muscles (HBMs). Cyclostomes, or modern jawless vertebrates, possess a rudimentary and superficial HBM lateral to the pharynx, whereas the HBM in jawed vertebrates is internalized and anteroposteriorly specified. Precursor cells of the HBM, marked b...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-020-00851-y

    authors: Kusakabe R,Higuchi S,Tanaka M,Kadota M,Nishimura O,Kuratani S

    更新日期:2020-09-09 00:00:00

  • Nitrate enhances skeletal muscle fatty acid oxidation via a nitric oxide-cGMP-PPAR-mediated mechanism.

    abstract:BACKGROUND:Insulin sensitivity in skeletal muscle is associated with metabolic flexibility, including a high capacity to increase fatty acid (FA) oxidation in response to increased lipid supply. Lipid overload, however, can result in incomplete FA oxidation and accumulation of potentially harmful intermediates where mi...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-015-0221-6

    authors: Ashmore T,Roberts LD,Morash AJ,Kotwica AO,Finnerty J,West JA,Murfitt SA,Fernandez BO,Branco C,Cowburn AS,Clarke K,Johnson RS,Feelisch M,Griffin JL,Murray AJ

    更新日期:2015-12-22 00:00:00

  • Yeast histone H3 lysine 4 demethylase Jhd2 regulates mitotic rDNA condensation.

    abstract:BACKGROUND:Nucleolar rDNA is tightly associated with silent heterochromatin, which is important for rDNA stability, nucleolar integration, and cellular senescence. Two pathways have been described that lead to rDNA silencing in yeast: 1) the RENT (regulator of nucleolar silencing and telophase exit) complex, which is c...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-014-0075-3

    authors: Ryu HY,Ahn S

    更新日期:2014-09-24 00:00:00

  • Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination.

    abstract:BACKGROUND:Root and tuber crops are a major food source in tropical Africa. Among these crops are several species in the monocotyledonous genus Dioscorea collectively known as yam, a staple tuber crop that contributes enormously to the subsistence and socio-cultural lives of millions of people, principally in West and ...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-017-0419-x

    authors: Tamiru M,Natsume S,Takagi H,White B,Yaegashi H,Shimizu M,Yoshida K,Uemura A,Oikawa K,Abe A,Urasaki N,Matsumura H,Babil P,Yamanaka S,Matsumoto R,Muranaka S,Girma G,Lopez-Montes A,Gedil M,Bhattacharjee R,Abberton M

    更新日期:2017-09-19 00:00:00

  • Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations.

    abstract:BACKGROUND:Analyzing and understanding the relationship between genotypes and phenotypes is at the heart of genetics. Research on the nematode Caenorhabditis elegans has been instrumental for unraveling genotype-phenotype relations, and has important implications for understanding the biology of mammals, but almost all...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/1741-7007-11-93

    authors: Volkers RJ,Snoek LB,Hubar CJ,Coopman R,Chen W,Yang W,Sterken MG,Schulenburg H,Braeckman BP,Kammenga JE

    更新日期:2013-08-19 00:00:00

  • An automated aquatic rack system for rearing marine invertebrates.

    abstract:BACKGROUND:One hundred years ago, marine organisms were the dominant systems for the study of developmental biology. The challenges in rearing these organisms outside of a marine setting ultimately contributed to a shift towards work on a smaller number of so-called model systems. Those animals are typically non-marine...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-020-00772-w

    authors: Henry JQ,Lesoway MP,Perry KJ

    更新日期:2020-05-04 00:00:00

  • Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida.

    abstract:BACKGROUND:Complex multicellularity requires elaborate developmental mechanisms, often based on the versatility of heterodimeric transcription factor (TF) interactions. Homeobox TFs in the TALE superclass are deeply embedded in the gene regulatory networks that orchestrate embryogenesis. Knotted-like homeobox (KNOX) TF...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-018-0605-5

    authors: Joo S,Wang MH,Lui G,Lee J,Barnas A,Kim E,Sudek S,Worden AZ,Lee JH

    更新日期:2018-11-05 00:00:00

  • Gut bacterial deamination of residual levodopa medication for Parkinson's disease.

    abstract:BACKGROUND:Parkinson's disease (PD) is a progressive neurodegenerative disorder characterized by both motor and non-motor symptoms. Gastrointestinal tract dysfunction is one of the non-motor features, where constipation is reported as the most common gastrointestinal symptom. Aromatic bacterial metabolites are attracti...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-020-00876-3

    authors: van Kessel SP,de Jong HR,Winkel SL,van Leeuwen SS,Nelemans SA,Permentier H,Keshavarzian A,El Aidy S

    更新日期:2020-10-20 00:00:00

  • OptiMouse: a comprehensive open source program for reliable detection and analysis of mouse body and nose positions.

    abstract:BACKGROUND:Accurate determination of mouse positions from video data is crucial for various types of behavioral analyses. While detection of body positions is straightforward, the correct identification of nose positions, usually more informative, is far more challenging. The difficulty is largely due to variability in...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-017-0377-3

    authors: Ben-Shaul Y

    更新日期:2017-05-15 00:00:00

  • mTORC1/AMPK responses define a core gene set for developmental cell fate switching.

    abstract:BACKGROUND:Kinases mTORC1 and AMPK act as energy sensors, controlling nutrient responses and cellular growth. Changes in nutrient levels affect diverse transcriptional networks, making it challenging to identify downstream paths that regulate cellular growth or a switch to development via nutrient variation. The life c...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-019-0673-1

    authors: Jaiswal P,Kimmel AR

    更新日期:2019-07-18 00:00:00

  • Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics.

    abstract::Animal domestication has fascinated biologists since Charles Darwin first drew the parallel between evolution via natural selection and human-mediated breeding of livestock and companion animals. In this review we show how studies of ancient DNA from domestic animals and their wild progenitors and congeners have shed ...

    journal_title:BMC biology

    pub_type: 杂志文章,评审

    doi:10.1186/s12915-019-0724-7

    authors: McHugo GP,Dover MJ,MacHugh DE

    更新日期:2019-12-02 00:00:00

  • Comparative analysis of Wnt expression identifies a highly conserved developmental transition in flatworms.

    abstract:BACKGROUND:Early developmental patterns of flatworms are extremely diverse and difficult to compare between distant groups. In parasitic flatworms, such as tapeworms, this is confounded by highly derived life cycles involving indirect development, and even the true orientation of the tapeworm antero-posterior (AP) axis...

    journal_title:BMC biology

    pub_type: 杂志文章

    doi:10.1186/s12915-016-0233-x

    authors: Koziol U,Jarero F,Olson PD,Brehm K

    更新日期:2016-03-04 00:00:00

  • A central role for p38 MAPK in the early transcriptional response to stress.

    abstract::The mitogen-activated protein kinase p38 (p38 MAPK) is activated by a number of stresses. A recent study in BMC Genomics has uncovered the early transcriptional responses to three types of stress and has demonstrated a central role for p38 MAPK in mediating these responses. See research article http://www.biomedcentra...

    journal_title:BMC biology

    pub_type: 评论,社论

    doi:10.1186/1741-7007-8-47

    authors: Whitmarsh AJ

    更新日期:2010-04-27 00:00:00

  • Focusing on optic tectum circuitry through the lens of genetics.

    abstract::The visual pathway is tasked with processing incoming signals from the retina and converting this information into adaptive behavior. Recent studies of the larval zebrafish tectum have begun to clarify how the 'micro-circuitry' of this highly organized midbrain structure filters visual input, which arrives in the supe...

    journal_title:BMC biology

    pub_type: 杂志文章,评审

    doi:10.1186/1741-7007-8-126

    authors: Nevin LM,Robles E,Baier H,Scott EK

    更新日期:2010-09-28 00:00:00