Phylogenetic analysis of porcine astrovirus in domestic pigs and wild boars in South Korea.

Abstract:

:Porcine astrovirus (PAstV) belongs to genetically divergent lineages within the genus Mamastrovirus. In this study, 25/129 (19.4 %) domestic pig and 1/146 (0.7 %) wild boar fecal samples tested in South Korea were positive for PAstV. Positive samples were mainly from pigs under 6 weeks old. Bayesian inference (BI) tree analysis for RNA-dependent RNA polymerase (RdRp) and capsid (ORF2) gene sequences, including Mamastrovirus and Avastrovirus, revealed a relatively geographically divergent lineage. The PAstVs of Hungary and America belong to lineage PAstV 4; those of Japan belong to PAstV 1; and those of Canada belong to PAstV 1, 2, 3, and 5, but not to 4. This study revealed that the PAstVs of Korea belong predominantly to lineage PAstV 4 and secondarily to PAstV 2. It was also observed that PAstV infections are widespread in South Korea regardless of the disease state in domestic pigs and in wild boars as well.

journal_name

Virus Genes

journal_title

Virus genes

authors

Lee MH,Jeoung HY,Park HR,Lim JA,Song JY,An DJ

doi

10.1007/s11262-012-0816-8

subject

Has Abstract

pub_date

2013-02-01 00:00:00

pages

175-81

issue

1

eissn

0920-8569

issn

1572-994X

journal_volume

46

pub_type

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