Phylogenetic classification of Japanese mtDNA assisted by complete mitochondrial DNA sequences.

Abstract:

:We investigated control and coding region polymorphisms in mitochondrial DNA (mtDNA) in 100 unrelated individuals from a Japanese population and determined the basal phylogenetic haplogroup lineages in all samples under updated information. Many of the basal phylogenetic haplogroup lineages assigned on East Asian mtDNA haplogroups corresponded to those previously established. However, new haplogroup lineages such as M7a2a, M7a2b, M7a2*, M7c1b, M11b2*, G2b*, D4c1b1a, D4g2b, A4*, A9, N9b*, B4d1, B4d2, and F1e were identified and established by complete sequencing. Although sequence comparison of the 1.15-kb control region identified 84 mitochondrial haplotypes, examination of coding region polymorphisms increased the total number of haplotypes to 91. Determination of the basal haplogroup lineages increased the discrimination power of mtDNA polymorphisms for personal identification and their usefulness in determining geographic origin in forensic casework in Japanese and other East Asian populations.

journal_name

Int J Legal Med

authors

Nohira C,Maruyama S,Minaguchi K

doi

10.1007/s00414-008-0308-5

subject

Has Abstract

pub_date

2010-01-01 00:00:00

pages

7-12

issue

1

eissn

0937-9827

issn

1437-1596

journal_volume

124

pub_type

杂志文章
  • A new method for ABO genotyping to avoid discrepancy between genetic and serological determinations.

    abstract::In Japan and elsewhere, ABO genotyping is frequently used in forensic practice for identification of a decomposed body. However, the phenotype deduced from the genotyping data is occasionally inconsistent with the real phenotype. In this paper, we report a simple ABO genotyping method in which five single nucleotide p...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-006-0148-0

    authors: Shintani-Ishida K,Zhu BL,Maeda H,Uemura K,Yoshida K

    更新日期:2008-01-01 00:00:00

  • Expression of heat-shock protein 70 (Hsp70) in the respiratory tract and lungs of fire victims.

    abstract::Immunohistochemical investigation of the respiratory tract and lungs of 63 fire victims revealed a statistically significant enhanced expression of heat-shock protein 70 (Hsp70) in the epiglottis, the trachea, and the main and the peripheral bronchi compared with a control group. In the fire victims, a strong expressi...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-006-0105-y

    authors: Marschall S,Rothschild MA,Bohnert M

    更新日期:2006-11-01 00:00:00

  • Evaluation of DNA mixtures involving two pairs of relatives.

    abstract::This paper considers the statistical evaluation of DNA mixtures in the following situations: (1) two unknown contributors are related respectively to two typed persons, (2) two of the unknown or untyped contributors are related and the third unknown contributor is related to a typed person, or (3) there are two pairs ...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-004-0493-9

    authors: Hu YQ,Fung WK

    更新日期:2005-09-01 00:00:00

  • Genetic variability at nine STR loci in the Chueta (Majorcan Jews) and the Balearic populations investigated by a single multiplex reaction.

    abstract::A study of the genetic variability in the Chueta (Majorcan Jews) and the Balearic (Majorca and Minorca Islands) populations was carried out using a multiplex system containing the nine tetrameric STRs D3S1358, vWA, FGA, D8S1179, D21S11, D18S51, D5S818, D13S317 and D7S820. The Chueta population has remained isolated be...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s004149900101

    authors: Tomàs C,Picornell A,Castro JA,Ramon MM,Gusmão L,Lareu MV,Carracedo A

    更新日期:2000-01-01 00:00:00

  • Genetic polymorphisms of 32 Y-STR loci in Meizhou Hakka population.

    abstract::Using AGCU Y24 Plus PCR Amplification Kit, 32 Y short tandem repeat (STR) loci were analyzed in 355 unrelated male participants of Meizhou city in Guangdong Province of China. By analyzing 341 different haplotypes, it was found that haplotype diversity (HD) and discrimination capacity (DC) were 0.9995 and 0.9605, resp...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-018-1845-1

    authors: Du W,Wu W,Wu Z,Guo L,Wang B,Chen L

    更新日期:2019-03-01 00:00:00

  • Serum lipid feature and potential biomarkers of lethal ventricular tachyarrhythmia (LVTA) induced by myocardial ion channel diseases: a rat model study.

    abstract::To determine the cause of death in myocardial ion channel diseases (MICD)-induced sudden cardiac death (SCD) cases is a difficulty in forensic identification practices. The majority of MICD-induced SCD cases would experience lethal ventricular tachyarrhythmia (LVTA) before deaths; thus, confirming the occurrence of LV...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-017-1710-7

    authors: Wu J,Wu Q,Dai W,Kong J,Lv J,Yu X,Wang X,Wang D

    更新日期:2018-03-01 00:00:00

  • delta-Storage pool disease: a pitfall in the forensic investigation of sudden anal blood loss in children: a case report.

    abstract::We present the case of a 3.5-year-old boy with sudden anal blood loss at school. Sexual abuse was suspected, and, apart from anal fissures seen on sigmoidoscopy, no other clinical signs of any sort of disorder were present. As no medical explanation for the blood loss could be given, penetrating anal trauma was sugges...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章,评审

    doi:10.1007/s00414-005-0053-y

    authors: De Munnynck K,Van Geet C,De Vos R,Van de Voorde W

    更新日期:2007-01-01 00:00:00

  • Comparative study on the effect of ethnicity on wisdom tooth eruption.

    abstract::The current knowledge base for evaluating the influence of ethnic origin on wisdom tooth eruption is still inadequate. We therefore analyzed and compared the chronology of wisdom tooth eruption in three ethnic populations-German, Japanese, and black South African-based on evidence from 2,482 conventional orthopantomog...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-007-0171-9

    authors: Olze A,van Niekerk P,Ishikawa T,Zhu BL,Schulz R,Maeda H,Schmeling A

    更新日期:2007-11-01 00:00:00

  • BamHI polymorphism of locus D2S44 in a West German population as revealed by VNTR probe YNH24.

    abstract::BamHI polymorphism at the VNTR locus D2S44 was investigated, concentrating on band frequencies, mutation rate and confirmation of Mendelian inheritance. In this series 39 restriction fragments showing frequencies less than 10% could clearly be distinguished. No mutations could be observed and the Mendelian character o...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/BF01816481

    authors: Henke L,Cleef S,Zakrzewska M,Henke J

    更新日期:1990-12-01 00:00:00

  • New bone post-processing tools in forensic imaging: a multi-reader feasibility study to evaluate detection time and diagnostic accuracy in rib fracture assessment.

    abstract:PURPOSE:The aim of this multi-reader feasibility study was to evaluate new post-processing CT imaging tools in rib fracture assessment of forensic cases by analyzing detection time and diagnostic accuracy. MATERIALS AND METHODS:Thirty autopsy cases (20 with and 10 without rib fractures in autopsy) were randomly select...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-016-1412-6

    authors: Glemser PA,Pfleiderer M,Heger A,Tremper J,Krauskopf A,Schlemmer HP,Yen K,Simons D

    更新日期:2017-03-01 00:00:00

  • Postmortem imaging findings and cause of death determination compared with autopsy: a systematic review of diagnostic test accuracy and meta-analysis.

    abstract:BACKGROUND:The aim of this study was to evaluate the sensitivity of postmortem computed tomography (PMCT), postmortem magnetic resonance imaging (PMMR) and PMCT angiography (PMCTA) compared with autopsy in cases of adult death investigations. METHODS:For this systematic review and meta-analysis, Embase, PubMed, Scopus...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章,meta分析

    doi:10.1007/s00414-019-02140-y

    authors: Ampanozi G,Halbheer D,Ebert LC,Thali MJ,Held U

    更新日期:2020-01-01 00:00:00

  • The iliac crest in forensic age diagnostics: evaluation of the apophyseal ossification in conventional radiography.

    abstract::Due to the increasing significance of forensic age estimations in the age of globalisation, novel radiographic criteria besides clavicles and hand bones may provide additional certainty for forensic age expertises. The present study analyses the suitability of the iliac crest apophysis by means of 643 pelvic radiograp...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-012-0763-x

    authors: Wittschieber D,Vieth V,Domnick C,Pfeiffer H,Schmeling A

    更新日期:2013-03-01 00:00:00

  • Development of a 13-locus PCR multiplex system for paternity testing.

    abstract::In this study the development of a 13-locus multiplex-PCR system fitting the updated demands for paternity testing in Germany is described. For this purpose an existing multiplex PCR system that allows the simultaneous amplification of eight different STR loci together with the sex-specific locus amelogenin ( genRESMP...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-003-0420-5

    authors: Schlenk J,Seidl S,Braunschweiger G,Betz P,Lederer T

    更新日期:2004-02-01 00:00:00

  • A dangerous design for a mountain bike.

    abstract::The case of a man's death as a consequence of an accident with a mountain bike was examined. Despite only slight external injuries, a general examination revealed the existence of a rupture of the diaphragm which was the ultimate cause of death. The discussion reconstructs the way the accident occurred and briefly ana...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s004140100237

    authors: Alvarez-Segui M,Castello-Ponce A,Verdu-Pascual F

    更新日期:2001-12-01 00:00:00

  • Dental age estimation in Somali children using the Willems et al. model.

    abstract:AIM:The aim of the current study was to retrospectively collect dental panoramic radiographs from Somali children living in Finland, to use the radiographic data to develop a new age estimation model based on the model established by Willems et al. (J Forensic Sci 46(4):893-895, 2001), and to compare the age prediction...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-018-1926-1

    authors: Metsäniitty M,Waltimo-Sirén J,Ranta H,Fieuws S,Thevissen P

    更新日期:2018-11-01 00:00:00

  • Airbag contact in traffic accidents: DNA detection to determine the driver identity.

    abstract::A total of 34 deployed driver and passenger airbags from altogether 20 vehicles after frontal collisions were investigated. In 80% of the airbags possible biological traces could be located with an alternative light source (ALS, Polilight) at a wavelength of 450-470 nm. These traces were swabbed, a part of them additi...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-003-0406-3

    authors: Grubwieser P,Pavlic M,Günther M,Rabl W

    更新日期:2004-02-01 00:00:00

  • DNA typing of cellular material on perforating bullets.

    abstract::DNA typing of cellular debris from perforating bullets was investigated following shooting experiments. A total of 14 perforating gunshots were fired into 9 calves. PCR typing of tissue fragments was done using bovine-specific primers flanking a 247 bp segment within the bovine lactoglobulin gene. Positive amplificati...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/BF01369787

    authors: Karger B,Meyer E,Knudsen PJ,Brinkmann B

    更新日期:1996-01-01 00:00:00

  • Neuropathological studies in the brains of AIDS patients with opportunistic diseases.

    abstract::The brains of 70 fatal cases with AIDS were studied by means of immunohistochemistry and in-situ hybridization in a consecutive autopsy series (1985-July 1992). In addition, the neuropathological changes were correlated with the neurological and neuroimaging findings. Opportunistic infections included toxoplasmosis (1...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/BF01222119

    authors: Neuen-Jacob E,Figge C,Arendt G,Wendtland B,Jacob B,Wechsler W

    更新日期:1993-01-01 00:00:00

  • The pharmacology and toxicology of kratom: from traditional herb to drug of abuse.

    abstract::Mitragyna speciosa (Rubiaceae), commonly known as kratom, is a tropical tree with a long history of traditional use in parts of Africa and Southeast Asia. In recent years, kratom has gained popularity for use as a recreational drug across the globe. Relatively new to the illicit market and used in a manner different f...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章,评审

    doi:10.1007/s00414-015-1279-y

    authors: Warner ML,Kaufman NC,Grundmann O

    更新日期:2016-01-01 00:00:00

  • The analysis of temporal gene expression to estimate the age of forensically important blow fly pupae: results from three blind studies.

    abstract::The estimation of the minimum postmortem interval can be implemented by age estimation of corpse-associated primary colonizers such as the blow flies (Diptera: Calliphoridae). In cases where pupae represent the oldest stages found on a body, their age must be added to the duration of prepupal development to estimate t...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-013-0922-8

    authors: Boehme P,Spahn P,Amendt J,Zehner R

    更新日期:2014-05-01 00:00:00

  • An acute gabapentin fatality: a case report with postmortem concentrations.

    abstract::Gabapentin (GBP) (Neurontin®, Horizant®, Gralise®) is a widely prescribed medication used primarily for the treatment of epilepsy and neuropathic pain. GBP has a favorable adverse effect profile in therapeutic dosing with the most common reported effects being dizziness, fatigue, drowsiness, weight gain, and periphera...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-015-1193-3

    authors: Cantrell FL,Mena O,Gary RD,McIntyre IM

    更新日期:2015-07-01 00:00:00

  • Haplotype diversity in mitochondrial DNA hypervariable region in a population of southeastern Brazil.

    abstract::Brazilian population derives from Native Amerindians, Europeans, and Africans. Southeastern Brazil is the most populous region of the country. The present study intended to characterize the maternal genetic ancestry of 290 individuals from southeastern (Brazil) population. Thus, we made the sequencing of the three hyp...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-014-1023-z

    authors: Fridman C,Gonzalez RS,Pereira AC,Cardena MM

    更新日期:2014-07-01 00:00:00

  • Forensic 3D documentation of skin injuries.

    abstract::An accurate and precise documentation of injuries is fundamental in a forensic pathological context. Photographs and manual measurements are taken of all injuries during autopsies, but ordinary photography projects a 3D wound on a 2D space. Using technologies such as photogrammetry, it is possible to create 3D detaile...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-016-1499-9

    authors: Villa C

    更新日期:2017-05-01 00:00:00

  • Medico-legal assessment of methamphetamine and amphetamine serum concentrations-what can we learn from survived intoxications?

    abstract::Medico-legal experts are increasingly enlisted to assess the methamphetamine and amphetamine serum concentrations after a criminal offense. However, since criminal users rarely provide useful information to medico-legal experts regarding the substances abused, when the substance(s) was/were used, dose of ingestion too...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-017-1607-5

    authors: Weber M,Lessig R,Richter C,Ritter AP,Weiß I

    更新日期:2017-09-01 00:00:00

  • Impact energy of everyday items used for assault.

    abstract::Blunt force is a frequently used type of violence especially because it can be performed with basically every object of our daily lives or with bare hands or feet. The injuries and medical consequences have been widely examined, whereas the forces and especially the energies acting on impact have rarely been analyzed....

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-017-1689-0

    authors: Siegenthaler L,Sprenger FD,Kneubuehl BP,Jackowski C

    更新日期:2018-01-01 00:00:00

  • Forensic identification of urine samples: a comparison between nuclear and mitochondrial DNA markers.

    abstract::Urine samples from 20 male volunteers of European Caucasian origin were stored at 4 degrees C over a 4-month period in order to compare the identification potential of nuclear DNA (nDNA) and mitochondrial DNA (mtDNA) markers. The amount of nDNA recovered from urines dramatically declined over time. Consequently, nDNA ...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-005-0004-7

    authors: Castella V,Dimo-Simonin N,Brandt-Casadevall C,Robinson N,Saugy M,Taroni F,Mangin P

    更新日期:2006-03-01 00:00:00

  • Are coding systems of frontal sinuses anatomically reliable? A study of correlation among morphological and metrical features.

    abstract::Frontal sinuses are of special interest for personal identification thanks to their high variability. A common procedure for comparing ante-mortem and post-mortem material is based on coding systems classifying frontal sinuses according to their morphological and metrical characteristics. However, the calculation of p...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-020-02293-1

    authors: Gibelli D,Cellina M,Gibelli S,Oliva AG,Termine G,Sforza C

    更新日期:2020-09-01 00:00:00

  • First Polish DNA "manhunt"--an application of Y-chromosome STRs.

    abstract::This study presents the application of Y-chromosomal STR polymorphisms to male identification in the case of a serial rapist and woman murderer in Poland. Since August 1996 a rapist from Swinoujscie (northwest Poland) committed at least 14 rapes. In the year 2000 he brutally raped 8 young girls and murdered a 22-year-...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-002-0320-0

    authors: Dettlaff-Kakol A,Pawlowski R

    更新日期:2002-10-01 00:00:00

  • A novel dimorphism in the human SRY gene: usefulness in human migration studies.

    abstract::A nucleotide polymorphism of C or T was detected at position 465 in the sex-determining region Y (SRY) gene. To evaluate the utility of this dimorphism in human population studies, the frequency and the frequency of the haplotype combined with the two polymorphic loci YAP and M9 were examined in a total of 130 unrelat...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s004149900111

    authors: Naito E,Umetsu K,Yuasa I,Dewa K,Sumi H,Yamanouchi H

    更新日期:2001-01-01 00:00:00

  • Evaluation of new primers for CSF1PO.

    abstract::We describe new primers for the detection of the STR polymorphism at the CSF1PO locus. These primers have been designed to produce shorter amplicons (150-182 bp) than the primers in standard use (295-327 bp). The reliability of the new primers for CSF1PO typing has been demonstrated by testing on known samples and by ...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/BF02441025

    authors: Yoshida K,Sekiguchi K,Kasai K,Sato H,Seta S,Sensabaugh GF

    更新日期:1997-01-01 00:00:00