Genetic typing of classical swine fever viruses from Lao PDR by analysis of the 5' non-coding region.

Abstract:

:The 5' non-coding region (5'-NCR) of 27 classical swine fever virus (CSFV) isolates from Lao People's Democratic Republic (Lao PDR) during 1997 and 1999 were amplified by RT-PCR. A 150-bp region of the 5'-NCR amplicons was analysed and compared with reference CSFV of European and Asian origin and a phylogenetic dendrogram constructed. Following analysis, all viruses were determined to belong to genogroup 2. Viruses from Lao PDR grouped on a geographical basis with the majority of northern/central isolates falling into subgroup 2.1 and southern/central isolates falling into subgroup 2.2. These results concur with previous studies of CSF viruses from Lao PDR, although this study recognized the first occurrence of subgroup 2.1 in southern Lao PDR.

journal_name

Virus Genes

journal_title

Virus genes

authors

Blacksell SD,Khounsy S,Boyle DB,Gleeson LJ,Westbury HA,Mackenzie JS

doi

10.1007/s11262-005-3253-0

subject

Has Abstract

pub_date

2005-12-01 00:00:00

pages

349-55

issue

3

eissn

0920-8569

issn

1572-994X

journal_volume

31

pub_type

杂志文章
  • Analysis of the molecular variability of Grapevine leafroll-associated virus 1 reveals the presence of two distinct virus groups and their mixed occurrence in grapevines.

    abstract::Genetic diversity of eight Grapevine leafroll-associated virus 1 (GLRaV-1) isolates recovered from grapevines in three distinct locations in the Czech Republic and Slovakia was characterised by restriction fragment length polymorphism (RFLP) analysis and by sequencing of cloned 540 bp fragment of the heat shock protei...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-005-3236-1

    authors: Komínek P,Glasa M,Bryxiová M

    更新日期:2005-12-01 00:00:00

  • Prevalence and genotyping of group 3 torque teno viruses detected in health care workers in Hungary.

    abstract::Torque teno viruses (TTVs) are classified into the Anellovirus genus of the Circoviridae family. In addition to TTV isolates, TTV genogroup 3 also includes the 8 virus strains known as SENV-A to H. In this study, the prevalence of TTV group 3 viruses and that of SENV-D and H in particular were determined among the sta...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0369-7

    authors: Dencs A,Hettmann A,Szomor KN,Kis Z,Takács M

    更新日期:2009-08-01 00:00:00

  • The minimal sequence essential for replication and movement of Cotton leaf curl Multan betasatellite DNA by a helper virus in plant cells.

    abstract::Betasatellites are single-stranded circular DNAs associated with a number of monopartite begomoviruses. Betasatellites rely on the helper begomoviruses for replication and movement in plant tissues and plant-to-plant transmission by vectors. Their genomes are approximately half the size of the helper viruses and consi...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1354-6

    authors: Eini O,Behjatnia SA

    更新日期:2016-10-01 00:00:00

  • In vitro isolation and molecular identification of reptarenavirus in Malaysia.

    abstract::Boid inclusion body disease (BIBD) is a viral disease of boids caused by reptarenavirus. In this study, tissue from naturally infected boid snakes were homogenized and propagated in African Monkey kidney (Vero) and rat embryonic fibroblast (REF) cells. Virus replication was determined by the presence of cytopathic eff...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1345-7

    authors: Abba Y,Hassim H,Hamzah H,Ibrahim OE,Ilyasu Y,Bande F,Mohd Lila MA,Noordin MM

    更新日期:2016-10-01 00:00:00

  • The 2A2 protein of Duck hepatitis A virus type 1 induces apoptosis in primary cell culture.

    abstract::Duck hepatitis A virus type 1, (DHAV-1) 2A2pro, is one of the most highly conserved viral proteins within the DHAV serotypes. However, its effect on host cells is unclear. We predicted that DHAV-1 2A2pro was a GTPase-like protein based on the results of multiple sequence alignment and homologous modeling analysis. Upo...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1364-4

    authors: Cao J,Ou X,Zhu D,Ma G,Cheng A,Wang M,Chen S,Jia R,Liu M,Sun K,Yang Q,Wu Y,Chen X

    更新日期:2016-12-01 00:00:00

  • Wuhan large pig roundworm virus identified in human feces in Brazil.

    abstract::We report here the complete genome sequence of a bipartite virus, herein denoted WLPRV/human/BRA/TO-34/201, from a sample collected in 2015 from a two-year-old child in Brazil presenting acute gastroenteritis. The virus has 98-99% identity (segments 2 and 1, respectively) with the Wuhan large pig roundworm virus (uncl...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-018-1557-0

    authors: Luchs A,Leal E,Komninakis SV,de Pádua Milagres FA,Brustulin R,da Aparecida Rodrigues Teles M,Gill DE,Deng X,Delwart E,Sabino EC,da Costa AC

    更新日期:2018-06-01 00:00:00

  • Phylogenetic analysis of partial RNA-polymerase blocks II and III of Rabies virus isolated from the main rabies reservoirs in Brazil.

    abstract::This study describes the results of the sequencing and analysis of segments of Blocks II and III of the RNA polymerase L gene of Rabies virus isolates from different reservoir species of Brazil. The phylogenetic relations of the virus were determined and a variety of species-specific nucleotides were found in the anal...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-012-0743-8

    authors: Carnieli P Jr,de Novaes Oliveira R,de Oliveira Fahl W,de Carvalho Ruthner Batista HB,Scheffer KC,Iamamoto K,Castilho JG

    更新日期:2012-08-01 00:00:00

  • Sequence determination and molecular analysis of two strains of bovine parainfluenza virus type 3 that are attenuated for primates.

    abstract::The Kansas/15626/84 (Ka) and Shipping Fever (SF) strains of bovine parainfluenza virus type 3 (BPIV3) replicate less efficiently than human PIV3 (HPIV3) in the upper and lower respiratory tract of rhesus monkeys, and BPIV3 Ka is also highly attenuated in humans and is in clinical trials as a candidate vaccine against ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1008130917204

    authors: Bailly JE,McAuliffe JM,Skiadopoulos MH,Collins PL,Murphy BR

    更新日期:2000-01-01 00:00:00

  • Cleavage of transcripts of foot and mouth disease virus (FMDV), Asia1 serotype, by ribozymes targeted to the VP3 and VP4 genes.

    abstract::Two ribozyme genes were designed to cut within the VP4 and VP3 sequences of foot and mouth disease virus (FMDV) Asia1 serotype genome. The two genes were synthesized and cloned into pBluescript under the control of the T3 promoter. The ribozyme designed to cut the VP4 gene contained two catalytic sequences targeted to...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01702658

    authors: Stram Y,Molad T

    更新日期:1995-01-01 00:00:00

  • Genetic characterization of an isolate of canine distemper virus from a Tibetan Mastiff in China.

    abstract::Canine distemper (CD) is a highly contagious, often fatal, multisystemic, and incurable disease in dogs and other carnivores, which is caused by canine distemper virus (CDV). Although vaccines have been used as the principal means of controlling the disease, CD has been reported in vaccinated animals. The hemoagglutin...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1062-z

    authors: Li W,Li T,Liu Y,Gao Y,Yang S,Feng N,Sun H,Wang S,Wang L,Bu Z,Xia X

    更新日期:2014-08-01 00:00:00

  • Hepatitis B virus subgenotype A1, occurrence of subgenotype D4, and S gene mutations among voluntary blood donors in Kenya.

    abstract::Kenya is one of the high endemic zones for hepatitis B virus (HBV) infection. The consensuses on prevalence of the HBV genotypes and the existence of their variants have not been fully established in Kenya. Hence, there is a need to further monitor the diversity of HBV. This study aimed to extend the current molecular...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-0976-1

    authors: Kwange SO,Budambula NL,Kiptoo MK,Okoth F,Ochwoto M,Oduor M,Kimotho JH

    更新日期:2013-12-01 00:00:00

  • Nuclear localization signals of varicella zoster virus ORF4.

    abstract::The varicella zoster virus (VZV) ORF4 protein, one of immediate-early genes protein, is associated with the tegument in purified virions. ORF4 protein functions at both transcriptional and post-transcriptional levels, present during different phase of whole VZV life cycle. ORF4 protein acts as a nucleocytoplasm shuttl...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-1006-z

    authors: Huang Y,Zhang J,Halawa MA,Yao S

    更新日期:2014-04-01 00:00:00

  • Unique evolution characteristics of the envelope protein of EIAV(LN₄₀), a virulent strain of equine infectious anemia virus.

    abstract::The Chinese equine infectious anemia virus (EIAV) virulent strain EIAV(LN40) is derived from a naturally occurring virus by continuously passing in horses for 16 generations. Its genome sequence is 23% different from that of the American strains or the Japanese strains, and the variation of envelope gp90 surface unit ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-010-0563-7

    authors: Wang X,Wang S,Lin Y,Jiang C,Ma J,Zhao L,Lv X,Wang F,Shen R,Zhou J

    更新日期:2011-04-01 00:00:00

  • Emerging viruses in the genus Comovirus.

    abstract::The intraspecies variability of capsid proteins of five viruses of the genus Comovirus was established. Inclusion of both capsid proteins to the sequence analysis reduces some uncertainties about species/strains demarcation criteria in the Comovirus genus. New approach is proposed for discrimination of Turnip ringspot...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0443-1

    authors: Petrzik K,Koloniuk I

    更新日期:2010-04-01 00:00:00

  • Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity.

    abstract::The spontaneous host-range mutants 812F1 and K1/420 are derived from polyvalent phage 812 that is almost identical to phage K, belonging to family Myoviridae and genus Kayvirus. Phage K1/420 is used for the phage therapy of staphylococcal infections. Endolysin of these mutants designated LysF1, consisting of an N-term...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-017-1507-2

    authors: Benešík M,Nováček J,Janda L,Dopitová R,Pernisová M,Melková K,Tišáková L,Doškař J,Žídek L,Hejátko J,Pantůček R

    更新日期:2018-02-01 00:00:00

  • Effects of gE/gI deletions on the miRNA expression of PRV-infected PK-15 cells.

    abstract::Pseudorabies virus (PRV) belongs to the Alphaherpesvirinae subfamily of Herpesviridae. PRV-induced pseudorabies is a highly contagious disease that has caused huge economic losses to the global swine industry. The PRV gE/gI gene deletion vaccine strain (Fa ΔgE/gI strain) constructed from the PRV Fa wild-type strain wa...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-020-01760-6

    authors: Liu X,Zhou Y,Luo Y,Chen Y

    更新日期:2020-08-01 00:00:00

  • Adaptation of wild-type measles virus to cotton rat lung cells: E89K mutation in matrix protein contributes to its fitness.

    abstract::Wild-type measles virus (wtMeV) adapted well to cotton rat lung (CRL) cells after serial passages. In order to evaluate the contributions of the individual genes of wtMeV for adaptation, whole genome sequences of the adapted and original viruses were determined and analyzed. The results showed that there were two muta...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0408-4

    authors: Dong JB,Saito A,Mine Y,Sakuraba Y,Nibe K,Goto Y,Komase K,Nakayama T,Miyata H,Iwata H,Haga T

    更新日期:2009-12-01 00:00:00

  • Correction to: Molecular analysis of maize (Zea mays L.)-infecting mastreviruses in Ethiopia reveals marked diversity of virus genomes and a novel species.

    abstract::The original version of this article unfortunately contained errors in the "Results" section. ...

    journal_title:Virus genes

    pub_type: 已发布勘误

    doi:10.1007/s11262-019-01662-2

    authors: Guadie D,Tesfaye K,Knierim D,Winter S,Abraham A

    更新日期:2019-06-01 00:00:00

  • Simultaneous analysis of the bidirectional African cassava mosaic virus promoter activity using two different luciferase genes.

    abstract::The expression of geminivirus genes is controlled by bidirectional promoters which are located in the large intergenic region of the circular DNA genomes and specifically regulated by virus encoded proteins. In order to study the simultaneous regulation of both orientations of the DNA A and DNA B promoters of African ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1008183827072

    authors: Frey PM,Schärer-Hernández NG,Fütterer J,Potrykus I,Puonti-Kaerlas J

    更新日期:2001-03-01 00:00:00

  • Sequence analysis of porcine adenovirus serotype 5 fibre gene: evidence for recombination.

    abstract::The nucleic acid and deduced amino acid sequence of the fibre gene of the HNF-61 strain of porcine adenovirus serotype 5 (PAdV-5) was determined and compared to that of the HNF-70 strain of the same serotype (Nagy et al., J Gen Virol 82, 525-529, 2001) and also to adenovirus fibre genes from the genera Mastadenovirus ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1014580802250

    authors: Nagy M,Nagy E,Tuboly T

    更新日期:2002-03-01 00:00:00

  • Genetic characterization of bovine coronavirus in Vietnam.

    abstract::A maximum clade credibility tree constructed using the full-length spike (S) and hemagglutinin-esterase genes revealed that Vietnamese Bovine coronavirus (BCoV) strains belong to a single cluster (C1); therefore, they might share a common origin with Cuban and Chinese BCoV strains. The omega values of cluster 1 (C1) a...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-019-01647-1

    authors: Shin J,Tark D,Le VP,Choe S,Cha RM,Park GN,Cho IS,Nga BTT,Lan NT,An DJ

    更新日期:2019-06-01 00:00:00

  • Analysis of a chitinase from EpapGV, a fast killing betabaculovirus.

    abstract::The main function of baculoviral chitinase protein (V-CHIA) is to promote the final liquefaction of infected host larvae, facilitating the dispersion of occlusion bodies (OBs) in the environment. In this study, a v-chiA from Epinotia aporema Granulovirus (EpapGV) was identified and characterized. The 1,713 base pairs ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-1019-7

    authors: Salvador R,Ferrelli ML,Sciocco-Cap A,Romanowski V

    更新日期:2014-04-01 00:00:00

  • Comparison of the sequence of the secretory glycoprotein A (gA) gene in Md5 and BC-1 strains of Marek's disease virus type 1.

    abstract::DNA fragments containing the secretory glycoprotein A (gA) gene of Marek's disease virus type 1 (MDV1) were cloned from the DNA libraries of very virulent Md5 and virulent BC-1 strains and sequenced. Two open reading frames (ORF1 and ORF2) were identified for both strains. The ORF1 has the potential to code for a prot...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00125125

    authors: Ihara T,Kato A,Ueda S,Ishihama A,Hirai K

    更新日期:1989-11-01 00:00:00

  • Macropodid herpesvirus 1 encodes genes for both thymidylate synthase and ICP34.5.

    abstract::Macropodid herpesvirus 1 (MaHV-1) is an unclassified alphaherpesvirus linked with the fatal infections of kangaroos and other marsupials. During the characterisation of the internal repeat region of MaHV-1, an open reading frame (ORF) encoding for thymidylate synthase (TS) gene was identified and completely sequenced....

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1015396430131

    authors: Guliani S,Polkinghorne I,Smith GA,Young P,Mattick JS,Mahony TJ

    更新日期:2002-06-01 00:00:00

  • A human vaccine strain of lamb rotavirus (Chinese) NSP4 gene: complete nucleotide sequence and phylogenetic analyses.

    abstract::A lamb strain of rotavirus has recently been licensed for use in China as a live vaccine to prevent rotavirus diarrhea in children. As rotavirus NSP4, especially the cytotoxic domain alone is considered to be associated with diarrhea, we sequenced gene segment 10, which encodes NSP4, of lamb rotavirus. Comparative ana...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1023491514820

    authors: Mohan KV,Kulkarni S,Glass RI,Zhisheng B,Atreya CD

    更新日期:2003-01-01 00:00:00

  • Comparative analysis of American Dengue virus type 1 full-genome sequences.

    abstract::Dengue virus (DENV; Genus Flavivirus, Family Flaviviridae) has been circulating in Brazil since at least the mid-1980s and continues to be responsible for sporadic cases of Dengue fever and Dengue hemorrhagic fever throughout this country. Here, we describe the full genomes of two new Brazilian DENV-serotype 1 (DENV-1...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-009-0428-0

    authors: Carvalho SE,Martin DP,Oliveira LM,Ribeiro BM,Nagata T

    更新日期:2010-02-01 00:00:00

  • The DI-DII linker of human parainfluenza virus type 3 fusion protein is critical for the virus.

    abstract::Human parainfluenza virus type 3 (HPIV3) causes the majority of childhood viral pneumonia around the world. Fusing the viral and target cell membranes is crucial for its entry into target cells, and the fusion process requires the concerted actions of two viral glycoproteins: hemagglutinin-neuraminidase (HN) and fusio...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-019-01713-8

    authors: Liu Y,Chi M,Wen H,Zhao L,Song Y,Liu N,Chi L,Wang Z

    更新日期:2020-02-01 00:00:00

  • First complete genome sequences of genogroup V, genotype 3 porcine sapoviruses: common 5'-terminal genomic feature of sapoviruses.

    abstract::Sapoviruses (SaVs) are enteric viruses and have been detected in various mammals. They are divided into multiple genogroups and genotypes based on the entire major capsid protein (VP1) encoding region sequences. In this study, we determined the first complete genome sequences of two genogroup V, genotype 3 (GV.3) SaV ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-017-1481-8

    authors: Oka T,Doan YH,Shimoike T,Haga K,Takizawa T

    更新日期:2017-12-01 00:00:00

  • Merkel cell polyomavirus in Merkel cell carcinogenesis: small T antigen-mediates c-Jun phosphorylation.

    abstract::Merkel cell carcinoma (MCC) is a highly aggressive neuroendocrine skin cancer associated with the Merkel cell polyomavirus (MCPyV). The MCPyV genome, which is clonally integrated in the majority of MCCs, encodes the regulatory small T (sT) antigen. Previously, reports have established MCPyV sT antigen as a potent onco...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1304-3

    authors: Wu JH,Simonette RA,Nguyen HP,Rady PL,Tyring SK

    更新日期:2016-06-01 00:00:00

  • A novel fusarivirus isolated from the phytopathogenic fungus Nigrospora oryzae.

    abstract::In this study, we report the discovery and molecular characterization of a novel mycovirus, Nigrospora oryzae fusarivirus 1 (NoFV1) isolated from the rice-infecting fungus Nigrospora oryzae. Excluding a poly (A) tail, the genome of the virus is 7004 nucleotide (nt) long containing three putative nonoverlapping open re...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1371-5

    authors: Zhong J,Zhao SQ,Li GF,Pang XD,Deng XJ,Zhu HJ,Da Gao B,Zhou Q

    更新日期:2016-12-01 00:00:00