Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil.

Abstract:

:Several specific primers for the nifH gene were tested with different pure telluric N2-fixing strains. A PolF/PolR primer set provided successful amplification of 19 representative N2-fixing strains. Three restriction enzymes, HaeIII, NdeII and MnlI, chosen for restriction fragment length polymorphism (RFLP) analyses, were the most discriminating for the study of nifH gene diversity as they resulted in differences between strains at the species level. Amplification by selected primers and RFLP were applied to assess the genetic diversity of the nifH gene pool in soil. Pair soils, one under cultivation, the second under permanent pasture, were found to harbor a contrasting diversity of nifH genes. Pure strain profiles could not be recognized in the nifH soil patterns. Using the simple procedure described, it was shown that the structure of nitrogen fixers in soil was influenced by soil functioning.

journal_name

Res Microbiol

journal_title

Research in microbiology

authors

Poly F,Monrozier LJ,Bally R

doi

10.1016/s0923-2508(00)01172-4

subject

Has Abstract

pub_date

2001-01-01 00:00:00

pages

95-103

issue

1

eissn

0923-2508

issn

1769-7123

pii

S0923250800011724

journal_volume

152

pub_type

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