Interaction of Fis protein with DNA: bending and specificity of binding.

Abstract:

:The Escherichia coli Fis protein is a dimeric DNA-binding protein whose specific binding sites share a weak consensus sequence. Use of the gel retardation technique indicates that binding of Fis on a linear DNA fragment leads to the formation of a ladder of defined retarded complexes, independently of the presence of a specific site. This non-specific binding of Fis is consistent with a model where equivalent low-affinity sites on a given fragment would be bound randomly and independently of each other by consecutive Fis dimers. Evidence is presented that non-specific binding of Fis can, however, induce an apparent site-specific conformational change in the DNA. This observation is discussed in terms of a model in which each Fis:DNA complex detected in gel retardation experiments actually represents a dynamic equilibrium of a fixed number of Fis dimers distributed on the fragment.

journal_name

Biochimie

journal_title

Biochimie

authors

Bétermier M,Galas DJ,Chandler M

doi

10.1016/0300-9084(94)90021-3

subject

Has Abstract

pub_date

1994-01-01 00:00:00

pages

958-67

issue

10-11

eissn

0300-9084

issn

1638-6183

pii

0300-9084(94)90021-3

journal_volume

76

pub_type

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